Wall clock time and date at job start Tue Mar 31 2020 22:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47057 * 2 1 4 4 C 1.42896 * 113.99654 * 180.02562 * 3 2 1 5 5 C 1.53036 * 109.45882 * 270.02539 * 4 3 2 6 6 C 1.53199 * 109.30903 * 178.60550 * 5 4 3 7 7 N 1.46928 * 108.76827 * 54.65656 * 6 5 4 8 8 S 1.65599 * 120.63072 * 126.35834 * 7 6 5 9 9 O 1.42099 * 106.40004 * 15.84200 * 8 7 6 10 10 O 1.42098 * 106.40015 * 148.75982 * 8 7 6 11 11 C 1.76199 * 107.21852 * 262.29864 * 8 7 6 12 12 C 1.37634 * 120.12923 * 246.42487 * 11 8 7 13 13 C 1.38612 * 120.25116 * 179.74719 * 12 11 8 14 14 C 1.38664 * 120.49743 * 0.50905 * 13 12 11 15 15 C 1.37600 * 120.24684 * 359.77095 * 14 13 12 16 16 C 1.40692 * 120.12613 * 66.70120 * 11 8 7 17 17 C 1.41398 * 120.24645 * 0.02562 * 16 11 8 18 18 H 1.08006 * 120.00119 * 27.48614 * 17 16 11 19 19 C 1.39948 * 120.00129 * 207.48960 * 17 16 11 20 20 N 1.30827 * 119.99804 * 14.93703 * 19 17 16 21 21 Si 1.86802 * 120.00011 * 194.93771 * 19 17 16 22 22 H 1.48494 * 109.46923 * 89.99943 * 21 19 17 23 23 H 1.48501 * 109.46915 * 209.99797 * 21 19 17 24 24 H 1.48498 * 109.47171 * 329.99681 * 21 19 17 25 25 C 1.46927 * 118.73517 * 306.38604 * 7 6 5 26 26 C 1.53041 * 109.45656 * 149.97278 * 4 3 2 27 27 H 1.09000 * 109.47124 * 299.99876 * 1 2 3 28 28 H 1.09000 * 109.46885 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47353 * 59.99987 * 1 2 3 30 30 H 1.08999 * 109.46989 * 120.00234 * 2 1 3 31 31 H 1.09000 * 109.47124 * 240.00124 * 2 1 3 32 32 H 1.09003 * 109.46089 * 30.00534 * 4 3 2 33 33 H 1.09000 * 109.50176 * 298.56586 * 5 4 3 34 34 H 1.08996 * 109.49647 * 58.67259 * 5 4 3 35 35 H 1.09004 * 109.59960 * 294.86542 * 6 5 4 36 36 H 1.08997 * 109.70110 * 174.50573 * 6 5 4 37 37 H 1.08000 * 119.87598 * 359.97438 * 12 11 8 38 38 H 1.07992 * 119.75443 * 180.25620 * 13 12 11 39 39 H 1.07999 * 119.87345 * 179.74157 * 14 13 12 40 40 H 1.08002 * 120.12374 * 179.97438 * 15 14 13 41 41 H 0.97000 * 119.99789 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.58334 * 293.81458 * 25 7 6 43 43 H 1.08998 * 109.70299 * 173.46465 * 25 7 6 44 44 H 1.09000 * 109.50094 * 301.33751 * 26 4 3 45 45 H 1.09000 * 109.50167 * 61.43379 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.9397 1.4995 1.4422 6 6 5.4693 1.5852 1.4376 7 7 5.8757 2.7385 0.6230 8 16 6.8856 3.8953 1.2428 9 8 7.4769 3.3308 2.4051 10 8 7.6437 4.3938 0.1491 11 6 5.8747 5.2282 1.7960 12 6 5.9397 6.4514 1.1684 13 6 5.1418 7.5001 1.5982 14 6 4.2777 7.3336 2.6699 15 6 4.2004 6.1212 3.3159 16 6 5.0020 5.0479 2.8848 17 6 4.9313 3.7976 3.5414 18 1 5.7880 3.1399 3.5444 19 6 3.7511 3.4122 4.1873 20 7 2.6352 4.0515 3.9471 21 14 3.7692 1.9850 5.3924 22 1 4.0568 2.4936 6.7576 23 1 2.4450 1.3128 5.3834 24 1 4.8199 1.0141 4.9942 25 6 5.3685 2.8461 -0.7517 26 6 3.8401 2.7459 -0.7227 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.8629 0.6016 -0.5149 33 1 3.5278 2.3718 1.9496 34 1 3.6279 0.5940 1.9627 35 1 5.8855 0.6722 1.0118 36 1 5.8333 1.7117 2.4573 37 1 6.6124 6.5936 0.3355 38 1 5.1963 8.4553 1.0972 39 1 3.6636 8.1588 2.9990 40 1 3.5270 5.9938 4.1507 41 1 1.8173 3.7846 4.3951 42 1 5.7765 2.0360 -1.3561 43 1 5.6638 3.8047 -1.1784 44 1 3.4573 2.7278 -1.7431 45 1 3.4291 3.6063 -0.1947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601312532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:48 Heat of formation + Delta-G solvation = -109.243033 kcal Electronic energy + Delta-G solvation = -29770.364735 eV Core-core repulsion = 25879.177936 eV Total energy + Delta-G solvation = -3891.186799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -38.87568 -37.58823 -36.55869 -36.37566 -34.90235 -33.93866 -31.94153 -30.69711 -30.21900 -29.89523 -29.52889 -25.53749 -23.72705 -23.09624 -22.42687 -21.68522 -21.12988 -19.99529 -18.17975 -17.69712 -17.28693 -16.42183 -15.99387 -15.53582 -15.44848 -15.14723 -14.45450 -14.39675 -14.03803 -13.86380 -13.48813 -13.27741 -13.15753 -12.98808 -12.78069 -12.46595 -12.19839 -11.99165 -11.96966 -11.73934 -11.42488 -11.31711 -11.25530 -11.22175 -11.15846 -11.07249 -10.85277 -10.70328 -10.61367 -10.54305 -10.30030 -10.05068 -9.87186 -9.38900 -9.22706 -9.12495 -8.43692 -8.00067 -7.60901 -7.08256 -4.77339 1.48584 2.35173 2.71372 2.94121 2.98301 3.08948 3.72872 3.77827 3.89451 4.36434 4.74969 5.01137 5.05561 5.15989 5.19867 5.32275 5.37312 5.44221 5.45105 5.55748 5.58182 5.71863 5.74505 5.92230 5.92999 5.97712 6.04617 6.08052 6.12913 6.21695 6.24240 6.30763 6.42808 6.58767 6.67582 6.79429 6.95762 6.99229 7.06322 7.24925 7.34824 7.52647 7.53209 7.68872 7.82116 7.94859 8.34932 8.49833 8.66288 9.84616 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009739 B = 0.006418 C = 0.005285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.429579 B = 4361.507556 C = 5296.688542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.100 3.900 5 C -0.165 4.165 6 C 0.130 3.870 7 N -0.993 5.993 8 S 2.702 3.298 9 O -0.973 6.973 10 O -0.996 6.996 11 C -0.777 4.777 12 C -0.002 4.002 13 C -0.250 4.250 14 C -0.077 4.077 15 C -0.158 4.158 16 C 0.194 3.806 17 C -0.473 4.473 18 H 0.115 0.885 19 C 0.086 3.914 20 N -0.768 5.768 21 Si 0.896 3.104 22 H -0.263 1.263 23 H -0.273 1.273 24 H -0.251 1.251 25 C 0.134 3.866 26 C -0.130 4.130 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.111 0.889 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.287 0.713 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.071 0.929 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.343 -7.495 -5.403 9.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.299 6.299 4 C 0.042 3.958 5 C -0.204 4.204 6 C 0.005 3.995 7 N -0.829 5.829 8 S 2.802 3.198 9 O -0.964 6.964 10 O -0.987 6.987 11 C -0.873 4.873 12 C -0.022 4.022 13 C -0.270 4.270 14 C -0.096 4.096 15 C -0.178 4.178 16 C 0.189 3.811 17 C -0.500 4.500 18 H 0.133 0.867 19 C -0.137 4.137 20 N -0.390 5.390 21 Si 0.719 3.281 22 H -0.188 1.188 23 H -0.198 1.198 24 H -0.174 1.174 25 C 0.008 3.992 26 C -0.169 4.169 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.129 0.871 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.140 0.860 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.089 0.911 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.779 -7.461 -5.339 9.586 hybrid contribution -0.894 -0.332 0.733 1.203 sum -3.673 -7.793 -4.606 9.769 Atomic orbital electron populations 1.21728 0.94189 1.01705 1.03130 1.22421 0.95293 0.84698 0.99527 1.87963 1.21498 1.25409 1.95058 1.21988 0.80325 0.97463 0.96001 1.22564 0.96272 1.04592 0.96999 1.21383 0.94322 0.87140 0.96675 1.57700 1.67078 1.37368 1.20753 1.01052 0.73301 0.73024 0.72450 1.93460 1.75540 1.78309 1.49086 1.93437 1.69088 1.81001 1.55129 1.29806 1.29294 1.14353 1.13827 1.20221 0.94677 0.91951 0.95382 1.20474 1.04574 0.98418 1.03563 1.20890 0.96562 0.96662 0.95441 1.21478 1.02770 0.91880 1.01672 1.16960 0.85994 0.92364 0.85790 1.20510 0.99528 1.02313 1.27681 0.86739 1.25929 0.94640 0.97947 0.95134 1.69807 0.99916 1.36189 1.33122 0.86461 0.79180 0.81244 0.81205 1.18762 1.19759 1.17383 1.21192 0.92886 1.02537 0.82574 1.21967 0.95825 0.98554 1.00559 0.91796 0.91589 0.92050 0.93687 0.93951 0.93039 0.87063 0.92169 0.92763 0.87761 0.87583 0.88825 0.88953 0.86025 0.90145 0.91817 0.89340 0.91076 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 37.16 0.38 -1.25 16 2 C 0.06 0.72 6.47 37.16 0.24 0.96 16 3 O -0.38 -6.11 9.99 -35.23 -0.35 -6.46 16 4 C 0.10 1.54 2.57 -26.69 -0.07 1.47 16 5 C -0.17 -2.84 5.56 -26.61 -0.15 -2.99 16 6 C 0.13 2.26 5.50 -3.71 -0.02 2.24 16 7 N -0.99 -18.35 3.28 -113.52 -0.37 -18.72 16 8 S 2.70 59.02 5.07 -107.50 -0.54 58.48 16 9 O -0.97 -23.17 14.36 -57.17 -0.82 -23.99 16 10 O -1.00 -22.51 15.96 -57.17 -0.91 -23.43 16 11 C -0.78 -18.35 5.97 -38.88 -0.23 -18.59 16 12 C 0.00 -0.05 9.53 -39.66 -0.38 -0.43 16 13 C -0.25 -5.46 10.05 -39.29 -0.39 -5.85 16 14 C -0.08 -1.71 10.02 -39.66 -0.40 -2.11 16 15 C -0.16 -3.85 8.67 -38.87 -0.34 -4.19 16 16 C 0.19 4.79 5.55 -106.83 -0.59 4.20 16 17 C -0.47 -11.26 6.00 -37.74 -0.23 -11.48 16 18 H 0.12 2.75 3.69 -52.48 -0.19 2.56 16 19 C 0.09 1.91 3.77 -17.34 -0.07 1.84 16 20 N -0.77 -17.49 10.99 55.55 0.61 -16.88 16 21 Si 0.90 17.16 29.59 -169.99 -5.03 12.13 16 22 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 23 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 24 H -0.25 -4.68 7.11 56.52 0.40 -4.28 16 25 C 0.13 2.10 6.35 -3.71 -0.02 2.08 16 26 C -0.13 -2.03 5.73 -26.61 -0.15 -2.18 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.55 7.84 -51.93 -0.41 0.14 16 31 H 0.04 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.05 0.69 7.79 -51.93 -0.40 0.28 16 33 H 0.11 2.28 5.59 -51.93 -0.29 1.99 16 34 H 0.06 0.94 7.84 -51.93 -0.41 0.53 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 1.99 4.94 -51.93 -0.26 1.74 16 37 H 0.11 2.22 7.32 -52.49 -0.38 1.84 16 38 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.12 2.98 6.28 -52.49 -0.33 2.65 16 41 H 0.29 6.01 8.30 -40.82 -0.34 5.67 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.09 1.39 7.36 -51.93 -0.38 1.00 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 LS Contribution 360.73 15.07 5.44 5.44 Total: -1.00 -28.16 360.73 -10.81 -38.97 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -6.42 Total: 10.75 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: -2.41 Total: -36.28 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.24 Total: -35.61 kcal Atomic # 8 Polarization: -51.79 SS G_CDS: -2.09 Total: -53.88 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Atomic # 16 Polarization: 59.02 SS G_CDS: -0.54 Total: 58.48 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.16 -10.81 -38.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601312532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.270 kcal (2) G-P(sol) polarization free energy of solvation -28.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds