Wall clock time and date at job start Tue Mar 31 2020 22:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47057 * 2 1 4 4 C 1.42896 * 113.99654 * 180.02562 * 3 2 1 5 5 C 1.53036 * 109.45882 * 270.02539 * 4 3 2 6 6 C 1.53199 * 109.30903 * 178.60550 * 5 4 3 7 7 N 1.46928 * 108.76827 * 54.65656 * 6 5 4 8 8 S 1.65599 * 120.63072 * 126.35834 * 7 6 5 9 9 O 1.42099 * 106.40004 * 15.84200 * 8 7 6 10 10 O 1.42098 * 106.40015 * 148.75982 * 8 7 6 11 11 C 1.76199 * 107.21852 * 262.29864 * 8 7 6 12 12 C 1.37634 * 120.12923 * 246.42487 * 11 8 7 13 13 C 1.38612 * 120.25116 * 179.74719 * 12 11 8 14 14 C 1.38664 * 120.49743 * 0.50905 * 13 12 11 15 15 C 1.37600 * 120.24684 * 359.77095 * 14 13 12 16 16 C 1.40692 * 120.12613 * 66.70120 * 11 8 7 17 17 C 1.41398 * 120.24645 * 0.02562 * 16 11 8 18 18 H 1.08006 * 120.00119 * 27.48614 * 17 16 11 19 19 C 1.39948 * 120.00129 * 207.48960 * 17 16 11 20 20 N 1.30827 * 119.99804 * 14.93703 * 19 17 16 21 21 Si 1.86802 * 120.00011 * 194.93771 * 19 17 16 22 22 H 1.48494 * 109.46923 * 89.99943 * 21 19 17 23 23 H 1.48501 * 109.46915 * 209.99797 * 21 19 17 24 24 H 1.48498 * 109.47171 * 329.99681 * 21 19 17 25 25 C 1.46927 * 118.73517 * 306.38604 * 7 6 5 26 26 C 1.53041 * 109.45656 * 149.97278 * 4 3 2 27 27 H 1.09000 * 109.47124 * 299.99876 * 1 2 3 28 28 H 1.09000 * 109.46885 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47353 * 59.99987 * 1 2 3 30 30 H 1.08999 * 109.46989 * 120.00234 * 2 1 3 31 31 H 1.09000 * 109.47124 * 240.00124 * 2 1 3 32 32 H 1.09003 * 109.46089 * 30.00534 * 4 3 2 33 33 H 1.09000 * 109.50176 * 298.56586 * 5 4 3 34 34 H 1.08996 * 109.49647 * 58.67259 * 5 4 3 35 35 H 1.09004 * 109.59960 * 294.86542 * 6 5 4 36 36 H 1.08997 * 109.70110 * 174.50573 * 6 5 4 37 37 H 1.08000 * 119.87598 * 359.97438 * 12 11 8 38 38 H 1.07992 * 119.75443 * 180.25620 * 13 12 11 39 39 H 1.07999 * 119.87345 * 179.74157 * 14 13 12 40 40 H 1.08002 * 120.12374 * 179.97438 * 15 14 13 41 41 H 0.97000 * 119.99789 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.58334 * 293.81458 * 25 7 6 43 43 H 1.08998 * 109.70299 * 173.46465 * 25 7 6 44 44 H 1.09000 * 109.50094 * 301.33751 * 26 4 3 45 45 H 1.09000 * 109.50167 * 61.43379 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.9397 1.4995 1.4422 6 6 5.4693 1.5852 1.4376 7 7 5.8757 2.7385 0.6230 8 16 6.8856 3.8953 1.2428 9 8 7.4769 3.3308 2.4051 10 8 7.6437 4.3938 0.1491 11 6 5.8747 5.2282 1.7960 12 6 5.9397 6.4514 1.1684 13 6 5.1418 7.5001 1.5982 14 6 4.2777 7.3336 2.6699 15 6 4.2004 6.1212 3.3159 16 6 5.0020 5.0479 2.8848 17 6 4.9313 3.7976 3.5414 18 1 5.7880 3.1399 3.5444 19 6 3.7511 3.4122 4.1873 20 7 2.6352 4.0515 3.9471 21 14 3.7692 1.9850 5.3924 22 1 4.0568 2.4936 6.7576 23 1 2.4450 1.3128 5.3834 24 1 4.8199 1.0141 4.9942 25 6 5.3685 2.8461 -0.7517 26 6 3.8401 2.7459 -0.7227 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.8629 0.6016 -0.5149 33 1 3.5278 2.3718 1.9496 34 1 3.6279 0.5940 1.9627 35 1 5.8855 0.6722 1.0118 36 1 5.8333 1.7117 2.4573 37 1 6.6124 6.5936 0.3355 38 1 5.1963 8.4553 1.0972 39 1 3.6636 8.1588 2.9990 40 1 3.5270 5.9938 4.1507 41 1 1.8173 3.7846 4.3951 42 1 5.7765 2.0360 -1.3561 43 1 5.6638 3.8047 -1.1784 44 1 3.4573 2.7278 -1.7431 45 1 3.4291 3.6063 -0.1947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601312532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:47 Heat of formation + Delta-G solvation = -126.078797 kcal Electronic energy + Delta-G solvation = -29771.094788 eV Core-core repulsion = 25879.177936 eV Total energy + Delta-G solvation = -3891.916853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.10770 -39.33094 -38.15675 -37.78139 -36.68660 -35.67020 -33.06765 -32.05606 -31.92694 -31.33035 -31.00781 -27.30242 -24.97137 -24.37776 -23.46650 -23.40280 -22.89254 -21.33292 -19.75340 -19.44125 -18.85618 -17.75446 -17.53367 -17.18808 -16.85643 -16.40673 -16.07753 -15.62821 -15.55508 -15.20056 -15.08029 -14.87513 -14.59869 -14.45515 -14.19711 -13.77031 -13.72008 -13.52882 -13.12914 -12.98936 -12.98276 -12.95449 -12.89148 -12.85322 -12.70326 -12.49762 -12.28562 -12.15023 -12.03474 -11.91818 -11.64107 -11.54645 -11.38481 -11.02588 -10.94475 -10.30240 -9.92116 -9.72223 -9.40967 -8.78714 -6.56496 -0.17992 0.57479 0.99392 1.35558 1.46685 1.47860 2.13800 2.25466 2.63507 2.78345 3.03223 3.52768 3.65375 3.81047 3.98255 4.10713 4.20402 4.28374 4.34022 4.38708 4.42021 4.48376 4.50468 4.53214 4.57247 4.72285 4.74482 4.81703 4.85510 4.93795 5.00460 5.02707 5.08969 5.20561 5.25851 5.31002 5.32916 5.38190 5.57775 5.62598 5.72536 5.83505 5.90809 6.03346 6.17414 6.45696 6.55175 6.73054 6.87691 8.16611 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009739 B = 0.006418 C = 0.005285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.429579 B = 4361.507556 C = 5296.688542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.406 6.406 4 C 0.102 3.898 5 C -0.164 4.164 6 C 0.126 3.874 7 N -0.990 5.990 8 S 2.717 3.283 9 O -0.998 6.998 10 O -1.006 7.006 11 C -0.798 4.798 12 C -0.015 4.015 13 C -0.256 4.256 14 C -0.078 4.078 15 C -0.187 4.187 16 C 0.169 3.831 17 C -0.485 4.485 18 H 0.109 0.891 19 C 0.064 3.936 20 N -0.788 5.788 21 Si 0.941 3.059 22 H -0.265 1.265 23 H -0.259 1.259 24 H -0.243 1.243 25 C 0.128 3.872 26 C -0.125 4.125 27 H 0.046 0.954 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.294 0.706 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.664 -9.368 -6.717 12.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.326 6.326 4 C 0.045 3.955 5 C -0.203 4.203 6 C 0.001 3.999 7 N -0.828 5.828 8 S 2.815 3.185 9 O -0.989 6.989 10 O -0.996 6.996 11 C -0.892 4.892 12 C -0.035 4.035 13 C -0.276 4.276 14 C -0.097 4.097 15 C -0.207 4.207 16 C 0.164 3.836 17 C -0.512 4.512 18 H 0.126 0.874 19 C -0.157 4.157 20 N -0.411 5.411 21 Si 0.761 3.239 22 H -0.190 1.190 23 H -0.183 1.183 24 H -0.166 1.166 25 C 0.003 3.997 26 C -0.164 4.164 27 H 0.065 0.935 28 H 0.111 0.889 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.105 0.895 42 H 0.121 0.879 43 H 0.102 0.898 44 H 0.114 0.886 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.112 -9.308 -6.657 11.860 hybrid contribution -0.844 0.264 1.089 1.402 sum -3.956 -9.045 -5.569 11.334 Atomic orbital electron populations 1.21752 0.93351 1.03200 1.02253 1.22684 0.96093 0.83301 1.00691 1.87947 1.21757 1.27789 1.95127 1.21970 0.80447 0.98259 0.94833 1.22501 0.95981 1.03482 0.98356 1.21526 0.94629 0.87890 0.95872 1.57480 1.66836 1.36583 1.21890 1.00502 0.73295 0.72862 0.71846 1.93417 1.76452 1.78604 1.50383 1.93412 1.69656 1.81459 1.55120 1.30177 1.29269 1.15815 1.13930 1.20534 0.95117 0.92027 0.95781 1.20836 1.03899 0.99497 1.03325 1.21206 0.96594 0.96721 0.95187 1.21531 1.03736 0.93007 1.02398 1.17255 0.86741 0.93021 0.86564 1.20550 0.99937 1.02129 1.28605 0.87357 1.26455 0.93848 0.99651 0.95749 1.69834 1.00454 1.37270 1.33570 0.85788 0.79966 0.79105 0.79041 1.18963 1.18296 1.16585 1.21492 0.92991 1.03941 0.81311 1.21907 0.95649 0.97341 1.01495 0.93468 0.88909 0.92125 0.93417 0.91723 0.89837 0.90822 0.90804 0.88902 0.89952 0.86240 0.85861 0.86418 0.87106 0.89522 0.87931 0.89752 0.88561 0.93710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 10.28 71.98 0.74 -2.19 16 2 C 0.05 1.09 6.47 71.98 0.47 1.55 16 3 O -0.41 -12.42 9.99 -148.98 -1.49 -13.91 16 4 C 0.10 2.93 2.57 30.62 0.08 3.01 16 5 C -0.16 -5.45 5.56 30.67 0.17 -5.28 16 6 C 0.13 4.19 5.50 86.36 0.47 4.66 16 7 N -0.99 -35.66 3.28 -513.05 -1.68 -37.34 16 8 S 2.72 119.26 5.07 -56.49 -0.29 118.98 16 9 O -1.00 -48.25 14.36 -128.00 -1.84 -50.09 16 10 O -1.01 -45.09 15.96 -128.00 -2.04 -47.13 16 11 C -0.80 -38.51 5.97 22.73 0.14 -38.37 16 12 C -0.01 -0.68 9.53 22.22 0.21 -0.47 16 13 C -0.26 -11.05 10.05 22.46 0.23 -10.82 16 14 C -0.08 -3.52 10.02 22.22 0.22 -3.30 16 15 C -0.19 -9.38 8.67 22.73 0.20 -9.19 16 16 C 0.17 8.63 5.55 -21.29 -0.12 8.51 16 17 C -0.48 -23.78 6.00 23.46 0.14 -23.64 16 18 H 0.11 5.37 3.69 -2.91 -0.01 5.36 16 19 C 0.06 2.89 3.77 85.26 0.32 3.21 16 20 N -0.79 -36.93 10.99 21.83 0.24 -36.69 16 21 Si 0.94 34.97 29.59 68.60 2.03 37.00 16 22 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 23 H -0.26 -8.97 7.11 99.48 0.71 -8.27 16 24 H -0.24 -8.67 7.11 99.48 0.71 -7.96 16 25 C 0.13 3.75 6.35 86.36 0.55 4.30 16 26 C -0.12 -3.72 5.73 30.67 0.18 -3.55 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.03 7.84 -2.39 -0.02 1.01 16 31 H 0.06 1.16 8.08 -2.39 -0.02 1.14 16 32 H 0.08 1.87 7.79 -2.39 -0.02 1.85 16 33 H 0.07 3.06 5.59 -2.39 -0.01 3.05 16 34 H 0.07 2.18 7.84 -2.39 -0.02 2.16 16 35 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 36 H 0.08 3.13 4.94 -2.39 -0.01 3.12 16 37 H 0.12 4.98 7.32 -2.91 -0.02 4.96 16 38 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 39 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 40 H 0.11 5.67 6.28 -2.91 -0.02 5.65 16 41 H 0.29 12.54 8.30 -92.71 -0.77 11.77 16 42 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.08 2.54 7.36 -2.39 -0.02 2.53 16 44 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -62.36 360.73 -0.08 -62.44 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: 1.00 Total: 38.31 kcal Atomic # 6 Polarization: -75.55 SS G_CDS: 3.99 Total: -71.56 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -1.44 Total: -74.03 kcal Atomic # 8 Polarization: -105.77 SS G_CDS: -5.37 Total: -111.13 kcal Atomic # 14 Polarization: 34.97 SS G_CDS: 2.03 Total: 37.00 kcal Atomic # 16 Polarization: 119.26 SS G_CDS: -0.29 Total: 118.98 kcal Total: -62.36 -0.08 -62.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601312532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.638 kcal (2) G-P(sol) polarization free energy of solvation -62.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds