Wall clock time and date at job start Tue Mar 31 2020 22:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47324 * 2 1 4 4 C 1.46493 * 119.99618 * 93.02582 * 3 2 1 5 5 C 1.52999 * 109.47604 * 295.66904 * 4 3 2 6 6 H 1.09002 * 110.27512 * 306.41326 * 5 4 3 7 7 C 1.55501 * 110.37077 * 184.29842 * 5 4 3 8 8 C 1.55306 * 100.69651 * 204.61178 * 7 5 4 9 9 C 1.54391 * 102.43659 * 34.12730 * 8 7 5 10 10 O 1.43240 * 107.58793 * 338.54212 * 9 8 7 11 11 S 1.65593 * 119.99964 * 273.02793 * 3 2 1 12 12 O 1.42099 * 106.40769 * 30.16002 * 11 3 2 13 13 O 1.42103 * 106.40305 * 163.07665 * 11 3 2 14 14 C 1.76200 * 107.21991 * 276.61654 * 11 3 2 15 15 C 1.37640 * 120.13043 * 114.02066 * 14 11 3 16 16 C 1.38605 * 120.24775 * 179.70540 * 15 14 11 17 17 C 1.38663 * 120.50568 * 0.59265 * 16 15 14 18 18 C 1.37600 * 120.24081 * 359.67989 * 17 16 15 19 19 C 1.40697 * 120.12493 * 294.29180 * 14 11 3 20 20 C 1.41396 * 120.24718 * 0.02562 * 19 14 11 21 21 H 1.07999 * 119.99792 * 323.06095 * 20 19 14 22 22 C 1.39945 * 120.00131 * 143.06728 * 20 19 14 23 23 N 1.30821 * 119.99855 * 354.98319 * 22 20 19 24 24 Si 1.86803 * 119.99943 * 174.98968 * 22 20 19 25 25 H 1.48494 * 109.47028 * 59.99378 * 24 22 20 26 26 H 1.48499 * 109.46790 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46688 * 299.99464 * 24 22 20 28 28 H 1.09006 * 109.47036 * 68.17370 * 1 2 3 29 29 H 1.08998 * 109.47472 * 188.17016 * 1 2 3 30 30 H 1.08996 * 109.47017 * 308.17239 * 1 2 3 31 31 H 1.09004 * 109.47056 * 240.00291 * 2 1 3 32 32 H 1.08999 * 109.47154 * 120.00285 * 2 1 3 33 33 H 1.09002 * 109.47043 * 175.66933 * 4 3 2 34 34 H 1.08999 * 109.47280 * 55.67481 * 4 3 2 35 35 H 1.08997 * 111.32941 * 86.73573 * 7 5 4 36 36 H 1.08994 * 111.14847 * 322.40678 * 7 5 4 37 37 H 1.09000 * 110.84796 * 275.83918 * 8 7 5 38 38 H 1.08994 * 110.84987 * 152.41810 * 8 7 5 39 39 H 1.09002 * 109.82780 * 98.05513 * 9 8 7 40 40 H 1.08991 * 109.83021 * 219.02778 * 9 8 7 41 41 H 1.08006 * 119.87118 * 359.97438 * 15 14 11 42 42 H 1.08006 * 119.74876 * 180.29919 * 16 15 14 43 43 H 1.07994 * 119.88184 * 179.70666 * 17 16 15 44 44 H 1.08006 * 120.12057 * 180.02562 * 18 17 16 45 45 H 0.97003 * 119.99547 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3257 2.0494 1.2669 5 6 1.0438 2.1992 2.0887 6 1 0.2725 2.6943 1.4986 7 6 1.3259 3.0021 3.3901 8 6 0.1772 2.4884 4.3005 9 6 0.0254 1.0202 3.8476 10 8 0.5830 0.9130 2.5326 11 16 2.2230 2.1871 -1.4321 12 8 1.2582 1.6585 -2.3315 13 8 2.3079 3.5678 -1.1070 14 6 3.8006 1.7277 -2.0683 15 6 3.8907 1.0030 -3.2350 16 6 5.1306 0.6456 -3.7409 17 6 6.2926 1.0021 -3.0734 18 6 6.2261 1.7218 -1.9025 19 6 4.9728 2.0955 -1.3827 20 6 4.8924 2.8346 -0.1800 21 1 4.1369 3.5977 -0.0647 22 6 5.7917 2.5774 0.8609 23 7 6.6427 1.5889 0.7608 24 14 5.7770 3.6457 2.3933 25 1 4.4439 3.5622 3.0421 26 1 6.8181 3.1690 3.3389 27 1 6.0572 5.0547 2.0171 28 1 -0.3633 0.3821 -0.9540 29 1 -0.3634 -1.0172 0.1460 30 1 -0.3633 0.6351 0.8079 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.7453 3.0350 1.0655 34 1 3.0480 1.4543 1.8257 35 1 1.2420 4.0754 3.2198 36 1 2.3005 2.7472 3.8060 37 1 -0.7409 3.0472 4.1191 38 1 0.4612 2.5428 5.3513 39 1 0.5637 0.3646 4.5321 40 1 -1.0296 0.7474 3.8253 41 1 2.9920 0.7155 -3.7604 42 1 5.1922 0.0810 -4.6596 43 1 7.2532 0.7143 -3.4742 44 1 7.1324 1.9989 -1.3844 45 1 7.2658 1.4104 1.4825 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601314300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:50 Heat of formation + Delta-G solvation = -104.024974 kcal Electronic energy + Delta-G solvation = -29736.415574 eV Core-core repulsion = 25845.455047 eV Total energy + Delta-G solvation = -3890.960527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.39286 -37.61205 -36.34137 -35.94658 -34.84041 -33.82358 -32.16476 -30.86008 -30.22786 -29.59096 -28.81425 -25.61252 -24.77630 -22.21743 -21.72329 -21.53411 -21.16025 -20.93230 -18.03442 -17.60354 -16.97525 -16.70911 -16.09975 -15.79662 -15.43557 -15.23504 -14.68169 -14.36058 -14.10289 -13.43444 -13.38590 -13.23586 -13.07079 -12.94077 -12.73075 -12.64177 -12.14364 -11.97654 -11.73094 -11.49857 -11.40470 -11.31560 -11.24347 -11.22019 -11.15346 -11.10337 -10.87652 -10.71725 -10.65592 -10.55818 -10.42112 -10.07127 -9.87520 -9.47638 -9.38419 -9.19581 -8.32755 -8.01408 -7.52844 -6.99606 -4.79100 1.53353 2.32162 2.70915 2.93404 2.96231 3.04970 3.74975 3.83098 4.00562 4.41086 4.55053 4.73393 4.85127 4.95263 5.20319 5.23989 5.33165 5.39729 5.51378 5.64564 5.70095 5.73646 5.83107 5.89437 5.93131 5.97307 6.02011 6.08701 6.17431 6.22357 6.31065 6.35929 6.43216 6.52187 6.76552 6.85137 6.91498 6.96947 7.05078 7.22917 7.31528 7.36672 7.50412 7.69730 7.77810 7.93639 8.33930 8.54415 8.63917 9.96009 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011117 B = 0.006517 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.172860 B = 4295.403101 C = 5965.754359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.138 3.862 3 N -0.985 5.985 4 C 0.130 3.870 5 C 0.065 3.935 6 H 0.072 0.928 7 C -0.153 4.153 8 C -0.155 4.155 9 C 0.048 3.952 10 O -0.365 6.365 11 S 2.703 3.297 12 O -0.992 6.992 13 O -0.977 6.977 14 C -0.768 4.768 15 C -0.008 4.008 16 C -0.242 4.242 17 C -0.078 4.078 18 C -0.151 4.151 19 C 0.199 3.801 20 C -0.489 4.489 21 H 0.113 0.887 22 C 0.083 3.917 23 N -0.788 5.788 24 Si 0.901 3.099 25 H -0.253 1.253 26 H -0.276 1.276 27 H -0.258 1.258 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.120 0.880 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.073 -0.861 7.637 10.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.012 3.988 3 N -0.820 5.820 4 C 0.004 3.996 5 C 0.006 3.994 6 H 0.090 0.910 7 C -0.192 4.192 8 C -0.193 4.193 9 C -0.029 4.029 10 O -0.284 6.284 11 S 2.801 3.199 12 O -0.982 6.982 13 O -0.967 6.967 14 C -0.862 4.862 15 C -0.028 4.028 16 C -0.262 4.262 17 C -0.097 4.097 18 C -0.171 4.171 19 C 0.194 3.806 20 C -0.518 4.518 21 H 0.131 0.869 22 C -0.137 4.137 23 N -0.413 5.413 24 Si 0.724 3.276 25 H -0.177 1.177 26 H -0.201 1.201 27 H -0.183 1.183 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.131 0.869 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.127 0.873 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.138 0.862 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.498 -0.618 7.296 10.480 hybrid contribution 0.970 0.013 0.866 1.301 sum -6.528 -0.605 8.161 10.468 Atomic orbital electron populations 1.22409 0.96552 1.01835 1.02866 1.20946 0.93950 0.81678 1.02181 1.57287 1.80229 1.23860 1.20598 1.21630 0.94093 0.99873 0.84044 1.23654 0.97113 0.83744 0.94920 0.91017 1.23397 0.99436 1.01133 0.95189 1.23092 0.99284 0.96410 1.00476 1.23075 0.98247 0.96057 0.85544 1.88542 1.79695 1.29960 1.30221 1.01079 0.74029 0.73072 0.71701 1.93439 1.60295 1.80804 1.63705 1.93451 1.87996 1.31609 1.83668 1.30076 1.18942 1.25014 1.12172 1.20286 0.97035 0.92422 0.93031 1.20547 0.92916 1.10347 1.02370 1.20941 0.96534 0.96728 0.95481 1.21484 0.98377 1.02123 0.95074 1.17026 0.89460 0.85095 0.88979 1.20336 1.15571 1.18265 0.97667 0.86922 1.25906 0.93041 0.94182 1.00577 1.69758 1.14851 1.23571 1.33077 0.86475 0.79729 0.81269 0.80126 1.17679 1.20117 1.18267 0.92352 0.92841 0.90539 0.91753 0.90464 0.86870 0.90582 0.89636 0.89895 0.90793 0.90406 0.91766 0.91954 0.87329 0.88589 0.88728 0.86203 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 9.61 37.16 0.36 -2.46 16 2 C 0.14 2.40 5.29 -4.04 -0.02 2.38 16 3 N -0.99 -19.08 2.90 -114.38 -0.33 -19.41 16 4 C 0.13 2.34 4.38 -4.05 -0.02 2.33 16 5 C 0.06 0.98 2.87 -25.40 -0.07 0.90 16 6 H 0.07 1.09 8.02 -51.93 -0.42 0.68 16 7 C -0.15 -1.92 6.62 -24.18 -0.16 -2.08 16 8 C -0.15 -1.55 7.00 -24.78 -0.17 -1.73 16 9 C 0.05 0.53 7.80 37.89 0.30 0.82 16 10 O -0.36 -5.26 7.13 -35.23 -0.25 -5.51 16 11 S 2.70 60.27 5.06 -107.50 -0.54 59.73 16 12 O -0.99 -22.80 15.33 -57.17 -0.88 -23.67 16 13 O -0.98 -23.30 14.33 -57.17 -0.82 -24.12 16 14 C -0.77 -18.50 5.97 -38.87 -0.23 -18.73 16 15 C -0.01 -0.18 9.53 -39.66 -0.38 -0.56 16 16 C -0.24 -5.29 10.05 -39.29 -0.39 -5.69 16 17 C -0.08 -1.74 10.02 -39.66 -0.40 -2.14 16 18 C -0.15 -3.71 8.62 -38.87 -0.33 -4.04 16 19 C 0.20 5.02 5.47 -106.82 -0.58 4.43 16 20 C -0.49 -11.88 6.34 -37.74 -0.24 -12.11 16 21 H 0.11 2.74 4.38 -52.49 -0.23 2.51 16 22 C 0.08 1.88 5.31 -17.34 -0.09 1.79 16 23 N -0.79 -18.50 11.13 55.55 0.62 -17.89 16 24 Si 0.90 16.93 29.56 -169.99 -5.03 11.90 16 25 H -0.25 -4.33 7.11 56.52 0.40 -3.93 16 26 H -0.28 -5.09 7.11 56.52 0.40 -4.68 16 27 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 28 H 0.06 1.00 7.20 -51.93 -0.37 0.62 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.19 4.84 -51.93 -0.25 0.94 16 31 H 0.06 1.13 8.05 -51.93 -0.42 0.71 16 32 H 0.08 1.27 7.68 -51.93 -0.40 0.87 16 33 H 0.11 2.18 4.92 -51.93 -0.26 1.93 16 34 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.11 2.31 7.32 -52.48 -0.38 1.92 16 42 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 43 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 44 H 0.12 2.97 6.67 -52.48 -0.35 2.62 16 45 H 0.29 6.13 8.30 -40.82 -0.34 5.79 16 LS Contribution 360.18 15.07 5.43 5.43 Total: -1.00 -28.08 360.18 -10.68 -38.76 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -6.44 Total: 11.67 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: -2.45 Total: -36.88 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.29 Total: -37.30 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: -1.95 Total: -53.31 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Atomic # 16 Polarization: 60.27 SS G_CDS: -0.54 Total: 59.73 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.08 -10.68 -38.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601314300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.266 kcal (2) G-P(sol) polarization free energy of solvation -28.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds