Wall clock time and date at job start Tue Mar 31 2020 22:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47324 * 2 1 4 4 C 1.46493 * 119.99618 * 93.02582 * 3 2 1 5 5 C 1.52999 * 109.47604 * 295.66904 * 4 3 2 6 6 H 1.09002 * 110.27512 * 306.41326 * 5 4 3 7 7 C 1.55501 * 110.37077 * 184.29842 * 5 4 3 8 8 C 1.55306 * 100.69651 * 204.61178 * 7 5 4 9 9 C 1.54391 * 102.43659 * 34.12730 * 8 7 5 10 10 O 1.43240 * 107.58793 * 338.54212 * 9 8 7 11 11 S 1.65593 * 119.99964 * 273.02793 * 3 2 1 12 12 O 1.42099 * 106.40769 * 30.16002 * 11 3 2 13 13 O 1.42103 * 106.40305 * 163.07665 * 11 3 2 14 14 C 1.76200 * 107.21991 * 276.61654 * 11 3 2 15 15 C 1.37640 * 120.13043 * 114.02066 * 14 11 3 16 16 C 1.38605 * 120.24775 * 179.70540 * 15 14 11 17 17 C 1.38663 * 120.50568 * 0.59265 * 16 15 14 18 18 C 1.37600 * 120.24081 * 359.67989 * 17 16 15 19 19 C 1.40697 * 120.12493 * 294.29180 * 14 11 3 20 20 C 1.41396 * 120.24718 * 0.02562 * 19 14 11 21 21 H 1.07999 * 119.99792 * 323.06095 * 20 19 14 22 22 C 1.39945 * 120.00131 * 143.06728 * 20 19 14 23 23 N 1.30821 * 119.99855 * 354.98319 * 22 20 19 24 24 Si 1.86803 * 119.99943 * 174.98968 * 22 20 19 25 25 H 1.48494 * 109.47028 * 59.99378 * 24 22 20 26 26 H 1.48499 * 109.46790 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46688 * 299.99464 * 24 22 20 28 28 H 1.09006 * 109.47036 * 68.17370 * 1 2 3 29 29 H 1.08998 * 109.47472 * 188.17016 * 1 2 3 30 30 H 1.08996 * 109.47017 * 308.17239 * 1 2 3 31 31 H 1.09004 * 109.47056 * 240.00291 * 2 1 3 32 32 H 1.08999 * 109.47154 * 120.00285 * 2 1 3 33 33 H 1.09002 * 109.47043 * 175.66933 * 4 3 2 34 34 H 1.08999 * 109.47280 * 55.67481 * 4 3 2 35 35 H 1.08997 * 111.32941 * 86.73573 * 7 5 4 36 36 H 1.08994 * 111.14847 * 322.40678 * 7 5 4 37 37 H 1.09000 * 110.84796 * 275.83918 * 8 7 5 38 38 H 1.08994 * 110.84987 * 152.41810 * 8 7 5 39 39 H 1.09002 * 109.82780 * 98.05513 * 9 8 7 40 40 H 1.08991 * 109.83021 * 219.02778 * 9 8 7 41 41 H 1.08006 * 119.87118 * 359.97438 * 15 14 11 42 42 H 1.08006 * 119.74876 * 180.29919 * 16 15 14 43 43 H 1.07994 * 119.88184 * 179.70666 * 17 16 15 44 44 H 1.08006 * 120.12057 * 180.02562 * 18 17 16 45 45 H 0.97003 * 119.99547 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3257 2.0494 1.2669 5 6 1.0438 2.1992 2.0887 6 1 0.2725 2.6943 1.4986 7 6 1.3259 3.0021 3.3901 8 6 0.1772 2.4884 4.3005 9 6 0.0254 1.0202 3.8476 10 8 0.5830 0.9130 2.5326 11 16 2.2230 2.1871 -1.4321 12 8 1.2582 1.6585 -2.3315 13 8 2.3079 3.5678 -1.1070 14 6 3.8006 1.7277 -2.0683 15 6 3.8907 1.0030 -3.2350 16 6 5.1306 0.6456 -3.7409 17 6 6.2926 1.0021 -3.0734 18 6 6.2261 1.7218 -1.9025 19 6 4.9728 2.0955 -1.3827 20 6 4.8924 2.8346 -0.1800 21 1 4.1369 3.5977 -0.0647 22 6 5.7917 2.5774 0.8609 23 7 6.6427 1.5889 0.7608 24 14 5.7770 3.6457 2.3933 25 1 4.4439 3.5622 3.0421 26 1 6.8181 3.1690 3.3389 27 1 6.0572 5.0547 2.0171 28 1 -0.3633 0.3821 -0.9540 29 1 -0.3634 -1.0172 0.1460 30 1 -0.3633 0.6351 0.8079 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.7453 3.0350 1.0655 34 1 3.0480 1.4543 1.8257 35 1 1.2420 4.0754 3.2198 36 1 2.3005 2.7472 3.8060 37 1 -0.7409 3.0472 4.1191 38 1 0.4612 2.5428 5.3513 39 1 0.5637 0.3646 4.5321 40 1 -1.0296 0.7474 3.8253 41 1 2.9920 0.7155 -3.7604 42 1 5.1922 0.0810 -4.6596 43 1 7.2532 0.7143 -3.4742 44 1 7.1324 1.9989 -1.3844 45 1 7.2658 1.4104 1.4825 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601314300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:49 Heat of formation + Delta-G solvation = -119.937494 kcal Electronic energy + Delta-G solvation = -29737.105593 eV Core-core repulsion = 25845.455047 eV Total energy + Delta-G solvation = -3891.650546 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.45390 -39.39395 -38.14588 -37.35229 -36.66069 -35.58117 -33.19073 -32.08558 -31.96826 -31.38890 -30.04740 -27.36634 -26.01460 -23.65273 -23.38854 -22.91462 -22.50817 -22.14040 -19.74701 -19.35859 -18.58795 -17.84318 -17.72514 -17.20272 -16.93072 -16.66469 -16.04889 -15.78057 -15.65543 -15.10501 -14.97206 -14.50121 -14.47216 -14.39591 -14.22941 -13.85195 -13.73783 -13.59319 -13.12985 -12.97879 -12.96112 -12.89497 -12.84210 -12.72184 -12.48562 -12.40849 -12.30668 -12.14996 -12.02550 -11.90278 -11.63639 -11.62131 -11.47802 -11.16989 -11.00226 -10.39704 -9.90699 -9.71570 -9.35193 -8.72130 -6.61709 -0.18729 0.51556 0.96872 1.38398 1.48740 1.49366 2.17922 2.24959 2.66071 2.93725 2.99221 3.45789 3.63547 3.64696 3.91721 3.96232 4.05529 4.26824 4.29288 4.33018 4.46590 4.47825 4.56649 4.62438 4.69311 4.74101 4.81566 4.89862 4.92021 4.97931 4.98940 5.05500 5.09029 5.14777 5.19959 5.28429 5.31305 5.45326 5.53198 5.63052 5.67993 5.84866 5.92048 5.97080 6.14195 6.20965 6.51489 6.75315 6.82553 8.25424 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011117 B = 0.006517 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.172860 B = 4295.403101 C = 5965.754359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.133 3.867 3 N -0.982 5.982 4 C 0.127 3.873 5 C 0.067 3.933 6 H 0.067 0.933 7 C -0.156 4.156 8 C -0.144 4.144 9 C 0.039 3.961 10 O -0.380 6.380 11 S 2.715 3.285 12 O -1.002 7.002 13 O -0.997 6.997 14 C -0.789 4.789 15 C -0.022 4.022 16 C -0.243 4.243 17 C -0.077 4.077 18 C -0.178 4.178 19 C 0.171 3.829 20 C -0.506 4.506 21 H 0.106 0.894 22 C 0.053 3.947 23 N -0.813 5.813 24 Si 0.948 3.052 25 H -0.227 1.227 26 H -0.266 1.266 27 H -0.263 1.263 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.121 0.879 42 H 0.129 0.871 43 H 0.124 0.876 44 H 0.109 0.891 45 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.997 -1.289 9.304 12.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.008 3.992 3 N -0.818 5.818 4 C 0.001 3.999 5 C 0.008 3.992 6 H 0.085 0.915 7 C -0.194 4.194 8 C -0.182 4.182 9 C -0.037 4.037 10 O -0.300 6.300 11 S 2.812 3.188 12 O -0.993 6.993 13 O -0.988 6.988 14 C -0.882 4.882 15 C -0.042 4.042 16 C -0.263 4.263 17 C -0.096 4.096 18 C -0.198 4.198 19 C 0.167 3.833 20 C -0.534 4.534 21 H 0.124 0.876 22 C -0.164 4.164 23 N -0.438 5.438 24 Si 0.768 3.232 25 H -0.150 1.150 26 H -0.191 1.191 27 H -0.188 1.188 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.139 0.861 42 H 0.147 0.853 43 H 0.142 0.858 44 H 0.127 0.873 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.422 -1.061 8.948 12.333 hybrid contribution 1.271 0.065 0.301 1.308 sum -7.150 -0.996 9.248 11.733 Atomic orbital electron populations 1.22344 0.95049 1.03379 1.02108 1.21124 0.95178 0.80580 1.02300 1.57126 1.80055 1.24606 1.20060 1.21682 0.95874 0.98699 0.83623 1.23491 0.95293 0.84680 0.95743 0.91472 1.23435 1.00367 1.01347 0.94275 1.23078 0.98703 0.95369 1.01013 1.23313 0.99078 0.97159 0.84169 1.88500 1.79942 1.29539 1.32038 1.00624 0.73372 0.72693 0.72098 1.93413 1.60322 1.80918 1.64642 1.93411 1.88109 1.33168 1.84114 1.30409 1.19565 1.25301 1.12943 1.20607 0.98205 0.92431 0.92962 1.20943 0.92241 1.09865 1.03259 1.21284 0.98225 0.95499 0.94592 1.21531 0.97888 1.03966 0.96386 1.17354 0.90101 0.86002 0.89825 1.20403 1.16339 1.18497 0.98180 0.87619 1.26591 0.92133 0.94899 1.02815 1.69801 1.15250 1.24527 1.34202 0.85752 0.81293 0.79120 0.77082 1.15001 1.19067 1.18771 0.93973 0.90427 0.90070 0.92437 0.89474 0.88426 0.91225 0.88800 0.90290 0.89611 0.88319 0.90926 0.90460 0.86081 0.85290 0.85796 0.87305 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.19 9.61 71.98 0.69 -4.50 16 2 C 0.13 4.59 5.29 86.38 0.46 5.04 16 3 N -0.98 -38.32 2.90 -515.80 -1.49 -39.81 16 4 C 0.13 4.58 4.38 86.38 0.38 4.96 16 5 C 0.07 1.95 2.87 31.46 0.09 2.04 16 6 H 0.07 2.00 8.02 -2.39 -0.02 1.98 16 7 C -0.16 -3.56 6.62 32.25 0.21 -3.34 16 8 C -0.14 -2.41 7.00 31.86 0.22 -2.19 16 9 C 0.04 0.75 7.80 72.45 0.56 1.32 16 10 O -0.38 -10.26 7.13 -148.98 -1.06 -11.32 16 11 S 2.71 123.43 5.06 -56.49 -0.29 123.15 16 12 O -1.00 -46.58 15.33 -128.00 -1.96 -48.55 16 13 O -1.00 -48.88 14.33 -128.00 -1.83 -50.72 16 14 C -0.79 -38.81 5.97 22.73 0.14 -38.68 16 15 C -0.02 -1.03 9.53 22.22 0.21 -0.81 16 16 C -0.24 -10.40 10.05 22.46 0.23 -10.18 16 17 C -0.08 -3.43 10.02 22.22 0.22 -3.20 16 18 C -0.18 -8.93 8.62 22.73 0.20 -8.73 16 19 C 0.17 8.89 5.47 -21.29 -0.12 8.77 16 20 C -0.51 -25.18 6.34 23.46 0.15 -25.03 16 21 H 0.11 5.31 4.38 -2.91 -0.01 5.30 16 22 C 0.05 2.45 5.31 85.26 0.45 2.90 16 23 N -0.81 -38.71 11.13 21.83 0.24 -38.47 16 24 Si 0.95 34.09 29.56 68.60 2.03 36.12 16 25 H -0.23 -7.17 7.11 99.48 0.71 -6.47 16 26 H -0.27 -9.10 7.11 99.48 0.71 -8.39 16 27 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 28 H 0.04 1.41 7.20 -2.38 -0.02 1.39 16 29 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.08 2.41 4.84 -2.39 -0.01 2.39 16 31 H 0.06 2.03 8.05 -2.38 -0.02 2.01 16 32 H 0.09 2.81 7.68 -2.39 -0.02 2.79 16 33 H 0.10 3.83 4.92 -2.39 -0.01 3.81 16 34 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.08 1.86 8.07 -2.39 -0.02 1.84 16 37 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.12 5.12 7.32 -2.91 -0.02 5.10 16 42 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 43 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 44 H 0.11 5.57 6.67 -2.91 -0.02 5.55 16 45 H 0.29 12.63 8.30 -92.71 -0.77 11.86 16 Total: -1.00 -61.15 360.18 0.73 -60.42 By element: Atomic # 1 Polarization: 39.81 SS G_CDS: 1.00 Total: 40.81 kcal Atomic # 6 Polarization: -75.74 SS G_CDS: 4.10 Total: -71.64 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -1.25 Total: -78.28 kcal Atomic # 8 Polarization: -105.72 SS G_CDS: -4.86 Total: -110.58 kcal Atomic # 14 Polarization: 34.09 SS G_CDS: 2.03 Total: 36.12 kcal Atomic # 16 Polarization: 123.43 SS G_CDS: -0.29 Total: 123.15 kcal Total: -61.15 0.73 -60.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601314300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.516 kcal (2) G-P(sol) polarization free energy of solvation -61.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds