Wall clock time and date at job start Tue Mar 31 2020 22:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46969 * 2 1 4 4 C 1.42896 * 114.00184 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.50147 * 329.93937 * 4 3 2 6 6 C 1.53043 * 109.49520 * 90.00317 * 4 3 2 7 7 C 1.53033 * 109.54288 * 181.31741 * 6 4 3 8 8 C 1.53192 * 109.31259 * 298.63685 * 7 6 4 9 9 N 1.46930 * 108.77606 * 54.62889 * 8 7 6 10 10 S 1.65604 * 120.62943 * 126.37387 * 9 8 7 11 11 O 1.42097 * 106.40047 * 330.19429 * 10 9 8 12 12 O 1.42101 * 106.39828 * 197.27234 * 10 9 8 13 13 C 1.76195 * 107.21789 * 83.73571 * 10 9 8 14 14 C 1.37646 * 120.12627 * 244.56256 * 13 10 9 15 15 C 1.38612 * 120.25002 * 179.97438 * 14 13 10 16 16 C 1.38651 * 120.50006 * 359.97438 * 15 14 13 17 17 C 1.37596 * 120.24947 * 0.02562 * 16 15 14 18 18 C 1.40693 * 120.13178 * 64.53834 * 13 10 9 19 19 C 1.41395 * 120.24441 * 0.04382 * 18 13 10 20 20 H 1.08004 * 119.99857 * 30.82919 * 19 18 13 21 21 C 1.39943 * 120.00276 * 210.82135 * 19 18 13 22 22 N 1.30819 * 119.99867 * 10.70711 * 21 19 18 23 23 Si 1.86799 * 120.00004 * 190.69747 * 21 19 18 24 24 H 1.48503 * 109.47043 * 60.00821 * 23 21 19 25 25 H 1.48497 * 109.46994 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47421 * 300.00371 * 23 21 19 27 27 C 1.46929 * 118.73978 * 306.64649 * 9 8 7 28 28 H 1.09009 * 109.46792 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47533 * 299.99889 * 1 2 3 30 30 H 1.09001 * 109.47393 * 60.00339 * 1 2 3 31 31 H 1.08996 * 109.47533 * 240.00111 * 2 1 3 32 32 H 1.09001 * 109.47393 * 119.99661 * 2 1 3 33 33 H 1.08998 * 109.46193 * 61.29204 * 6 4 3 34 34 H 1.09006 * 109.46190 * 301.33779 * 6 4 3 35 35 H 1.08998 * 109.50365 * 178.68151 * 7 6 4 36 36 H 1.09004 * 109.52508 * 58.59795 * 7 6 4 37 37 H 1.09004 * 109.58442 * 294.84698 * 8 7 6 38 38 H 1.08998 * 109.59264 * 174.41657 * 8 7 6 39 39 H 1.08001 * 119.87231 * 359.95289 * 14 13 10 40 40 H 1.07998 * 119.74984 * 179.97438 * 15 14 13 41 41 H 1.07997 * 119.87611 * 180.27903 * 16 15 14 42 42 H 1.08002 * 120.13011 * 179.97438 * 17 16 15 43 43 H 0.97001 * 119.99878 * 180.02562 * 22 21 19 44 44 H 1.08991 * 109.58791 * 173.14668 * 27 9 8 45 45 H 1.08998 * 109.58309 * 293.56936 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8636 0.6026 0.5156 6 6 3.9406 1.5004 -1.4419 7 6 5.4684 1.5883 -1.4427 8 6 5.9020 2.8789 -0.7405 9 7 5.2960 2.9159 0.5975 10 16 6.2349 3.1404 1.9431 11 8 7.5075 2.5848 1.6416 12 8 5.4499 2.7279 3.0534 13 6 6.4800 4.8758 2.1244 14 6 7.7426 5.4112 2.0068 15 6 7.9383 6.7761 2.1485 16 6 6.8673 7.6172 2.4091 17 6 5.5964 7.1040 2.5306 18 6 5.3859 5.7197 2.3893 19 6 4.0844 5.1810 2.5125 20 1 3.9481 4.1806 2.8961 21 6 2.9728 5.9441 2.1377 22 7 3.1392 7.0643 1.4827 23 14 1.2515 5.3631 2.5723 24 1 1.1259 5.2472 4.0475 25 1 0.2561 6.3418 2.0658 26 1 1.0040 4.0383 1.9487 27 6 3.8419 2.7438 0.7195 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.5265 2.3718 -1.9492 34 1 3.6287 0.5951 -1.9627 35 1 5.8321 1.5933 -2.4702 36 1 5.8829 0.7298 -0.9142 37 1 5.5653 3.7399 -1.3180 38 1 6.9881 2.8988 -0.6503 39 1 8.5840 4.7653 1.8039 40 1 8.9324 7.1875 2.0551 41 1 7.0306 8.6797 2.5131 42 1 4.7636 7.7609 2.7340 43 1 2.3687 7.5934 1.2232 44 1 3.5692 2.6746 1.7725 45 1 3.3340 3.5936 0.2635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601318551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:25 Heat of formation + Delta-G solvation = -128.225079 kcal Electronic energy + Delta-G solvation = -29337.561163 eV Core-core repulsion = 25445.551240 eV Total energy + Delta-G solvation = -3892.009922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.18899 -39.38697 -38.20335 -37.82627 -36.74205 -35.66989 -33.20129 -32.53600 -31.99542 -31.36659 -30.42239 -27.35312 -25.58096 -24.01190 -23.58799 -23.37567 -22.94671 -21.53034 -19.77820 -19.36404 -18.85008 -17.88480 -17.47179 -17.19843 -16.92007 -16.54319 -16.15403 -15.94841 -15.55880 -15.19932 -14.95631 -14.79610 -14.67115 -14.45367 -14.37553 -14.05568 -13.75437 -13.45855 -13.11079 -13.04285 -13.01631 -12.96590 -12.89404 -12.82374 -12.79542 -12.52409 -12.37048 -12.17034 -12.01282 -11.75172 -11.73316 -11.66909 -11.58264 -11.18031 -11.03197 -10.46244 -9.92169 -9.73571 -9.41712 -8.79830 -6.63114 -0.26458 0.52392 0.97210 1.36362 1.45294 1.50885 2.12180 2.15798 2.61739 2.73211 2.97815 3.46435 3.68257 3.74393 3.84665 4.00954 4.11960 4.21335 4.28213 4.30588 4.32440 4.41092 4.48901 4.50497 4.56298 4.70029 4.81557 4.82390 4.94582 4.97415 5.01381 5.02118 5.03874 5.12129 5.16781 5.27080 5.27931 5.28693 5.39844 5.53346 5.66718 5.75860 5.86173 5.99116 6.12514 6.32861 6.50622 6.70489 6.82651 8.16138 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.006081 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.265802 B = 4603.618758 C = 6281.208337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.401 6.401 4 C 0.078 3.922 5 H 0.066 0.934 6 C -0.130 4.130 7 C -0.121 4.121 8 C 0.110 3.890 9 N -0.985 5.985 10 S 2.718 3.282 11 O -1.000 7.000 12 O -1.000 7.000 13 C -0.794 4.794 14 C -0.018 4.018 15 C -0.248 4.248 16 C -0.076 4.076 17 C -0.183 4.183 18 C 0.168 3.832 19 C -0.495 4.495 20 H 0.103 0.897 21 C 0.058 3.942 22 N -0.800 5.800 23 Si 0.947 3.053 24 H -0.262 1.262 25 H -0.260 1.260 26 H -0.244 1.244 27 C 0.134 3.866 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.123 0.877 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.295 0.705 44 H 0.079 0.921 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.132 -9.280 -7.884 12.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.321 6.321 4 C 0.019 3.981 5 H 0.084 0.916 6 C -0.168 4.168 7 C -0.160 4.160 8 C -0.015 4.015 9 N -0.823 5.823 10 S 2.817 3.183 11 O -0.991 6.991 12 O -0.990 6.990 13 C -0.888 4.888 14 C -0.037 4.037 15 C -0.268 4.268 16 C -0.095 4.095 17 C -0.203 4.203 18 C 0.163 3.837 19 C -0.522 4.522 20 H 0.120 0.880 21 C -0.161 4.161 22 N -0.424 5.424 23 Si 0.767 3.233 24 H -0.187 1.187 25 H -0.184 1.184 26 H -0.167 1.167 27 C 0.008 3.992 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.141 0.859 40 H 0.147 0.853 41 H 0.141 0.859 42 H 0.130 0.870 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.074 -9.616 -7.482 12.566 hybrid contribution -0.589 0.946 0.322 1.160 sum -3.663 -8.670 -7.160 11.826 Atomic orbital electron populations 1.21772 0.92832 1.03456 1.02550 1.22764 0.96410 0.82817 1.00953 1.87888 1.20596 1.28320 1.95253 1.22344 0.81153 0.97414 0.97206 0.91628 1.21936 0.95933 1.03552 0.95359 1.21860 0.95090 0.96758 1.02261 1.21664 0.98266 0.99657 0.81916 1.57308 1.16387 1.87650 1.20972 1.00442 0.71472 0.74139 0.72270 1.93412 1.42017 1.78550 1.85115 1.93422 1.70894 1.83023 1.51682 1.30207 1.01308 1.24240 1.33085 1.20583 0.94348 0.95986 0.92808 1.20913 0.98836 0.93272 1.13781 1.21258 0.93005 0.99201 0.96017 1.21542 0.96298 0.96084 1.06399 1.17306 0.91201 0.92095 0.83088 1.20454 0.90885 1.03395 1.37514 0.87978 1.26497 1.04538 0.93638 0.91462 1.69793 1.35225 1.11999 1.25377 0.85737 0.76574 0.80747 0.80261 1.18662 1.18427 1.16723 1.21171 0.79265 0.97350 1.01446 0.88691 0.93042 0.91975 0.91589 0.93210 0.91296 0.89490 0.87348 0.91189 0.91100 0.89187 0.85871 0.85307 0.85899 0.87049 0.89414 0.90296 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 10.28 71.98 0.74 -2.05 16 2 C 0.05 1.04 6.47 71.98 0.47 1.50 16 3 O -0.40 -12.22 9.99 -148.98 -1.49 -13.70 16 4 C 0.08 2.37 2.75 30.53 0.08 2.45 16 5 H 0.07 1.88 7.79 -2.39 -0.02 1.87 16 6 C -0.13 -3.10 5.50 30.62 0.17 -2.94 16 7 C -0.12 -2.76 6.08 30.67 0.19 -2.57 16 8 C 0.11 3.33 6.46 86.36 0.56 3.89 16 9 N -0.98 -37.47 3.25 -513.85 -1.67 -39.14 16 10 S 2.72 121.96 5.10 -56.49 -0.29 121.67 16 11 O -1.00 -44.84 15.75 -128.00 -2.02 -46.86 16 12 O -1.00 -49.82 14.37 -128.00 -1.84 -51.66 16 13 C -0.79 -38.75 5.96 22.73 0.14 -38.62 16 14 C -0.02 -0.79 9.53 22.22 0.21 -0.58 16 15 C -0.25 -10.49 10.05 22.46 0.23 -10.26 16 16 C -0.08 -3.36 10.02 22.22 0.22 -3.14 16 17 C -0.18 -9.23 8.65 22.73 0.20 -9.04 16 18 C 0.17 8.74 5.52 -21.29 -0.12 8.62 16 19 C -0.49 -25.33 6.69 23.46 0.16 -25.17 16 20 H 0.10 5.33 4.02 -2.91 -0.01 5.31 16 21 C 0.06 2.76 5.24 85.26 0.45 3.21 16 22 N -0.80 -38.58 10.98 21.83 0.24 -38.34 16 23 Si 0.95 37.18 29.57 68.60 2.03 39.20 16 24 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 25 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 26 H -0.24 -9.44 7.11 99.48 0.71 -8.74 16 27 C 0.13 5.08 4.50 86.22 0.39 5.47 16 28 H 0.09 1.24 8.14 -2.38 -0.02 1.23 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.18 7.85 -2.39 -0.02 1.16 16 32 H 0.05 1.07 8.09 -2.39 -0.02 1.05 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.09 1.64 7.85 -2.38 -0.02 1.62 16 35 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.09 2.70 7.08 -2.39 -0.02 2.69 16 39 H 0.12 5.03 7.33 -2.91 -0.02 5.01 16 40 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 41 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 42 H 0.11 5.73 6.38 -2.91 -0.02 5.71 16 43 H 0.29 12.87 8.30 -92.71 -0.77 12.10 16 44 H 0.08 3.35 5.46 -2.39 -0.01 3.34 16 45 H 0.06 2.62 8.11 -2.39 -0.02 2.60 16 Total: -1.00 -63.17 365.40 0.03 -63.14 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.99 Total: 34.90 kcal Atomic # 6 Polarization: -73.30 SS G_CDS: 4.07 Total: -69.23 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -1.43 Total: -77.48 kcal Atomic # 8 Polarization: -106.87 SS G_CDS: -5.34 Total: -112.22 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.20 kcal Atomic # 16 Polarization: 121.96 SS G_CDS: -0.29 Total: 121.67 kcal Total: -63.17 0.03 -63.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601318551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.080 kcal (2) G-P(sol) polarization free energy of solvation -63.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds