Wall clock time and date at job start Tue Mar 31 2020 22:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46924 * 2 1 4 4 C 1.46494 * 120.00434 * 285.90514 * 3 2 1 5 5 C 1.52996 * 109.47067 * 273.62046 * 4 3 2 6 6 H 1.08996 * 110.44020 * 306.45875 * 5 4 3 7 7 C 1.54816 * 110.48918 * 183.76675 * 5 4 3 8 8 C 1.54997 * 102.09274 * 220.44368 * 7 5 4 9 9 O 1.44384 * 103.49259 * 37.02243 * 8 7 5 10 10 C 1.43744 * 106.97572 * 319.94029 * 9 8 7 11 11 S 1.65607 * 119.99746 * 105.90520 * 3 2 1 12 12 O 1.42102 * 106.40129 * 164.78318 * 11 3 2 13 13 O 1.42107 * 106.40087 * 31.86639 * 11 3 2 14 14 C 1.76191 * 107.21810 * 278.32701 * 11 3 2 15 15 C 1.37642 * 120.13125 * 114.77117 * 14 11 3 16 16 C 1.38611 * 120.24876 * 179.97438 * 15 14 11 17 17 C 1.38652 * 120.50455 * 359.97438 * 16 15 14 18 18 C 1.37597 * 120.24633 * 359.67513 * 17 16 15 19 19 C 1.40698 * 120.12773 * 294.74863 * 14 11 3 20 20 C 1.41398 * 120.24383 * 0.02562 * 19 14 11 21 21 H 1.08000 * 120.00087 * 325.40863 * 20 19 14 22 22 C 1.39947 * 120.00066 * 145.40669 * 20 19 14 23 23 N 1.30816 * 120.00462 * 150.91007 * 22 20 19 24 24 Si 1.86806 * 119.99919 * 330.90873 * 22 20 19 25 25 H 1.48494 * 109.47207 * 274.68336 * 24 22 20 26 26 H 1.48503 * 109.46914 * 34.67922 * 24 22 20 27 27 H 1.48489 * 109.47319 * 154.67899 * 24 22 20 28 28 H 1.09002 * 109.47486 * 299.99724 * 1 2 3 29 29 H 1.09002 * 109.47045 * 60.00134 * 1 2 3 30 30 H 1.09003 * 109.46781 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47400 * 239.99803 * 2 1 3 32 32 H 1.09002 * 109.47045 * 119.99866 * 2 1 3 33 33 H 1.08999 * 109.46763 * 33.61740 * 4 3 2 34 34 H 1.08996 * 109.47389 * 153.61774 * 4 3 2 35 35 H 1.09003 * 110.90710 * 338.64174 * 7 5 4 36 36 H 1.08998 * 110.90730 * 102.24325 * 7 5 4 37 37 H 1.09001 * 110.62038 * 278.52380 * 8 7 5 38 38 H 1.09002 * 110.74992 * 155.58883 * 8 7 5 39 39 H 1.09002 * 109.87620 * 267.08879 * 10 9 8 40 40 H 1.08997 * 109.87991 * 145.93113 * 10 9 8 41 41 H 1.08004 * 119.87266 * 359.97438 * 15 14 11 42 42 H 1.07999 * 119.74459 * 179.97438 * 16 15 14 43 43 H 1.08002 * 119.87580 * 179.97438 * 17 16 15 44 44 H 1.08002 * 120.12909 * 180.30176 * 18 17 16 45 45 H 0.96998 * 120.00576 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9347 2.1878 -1.2201 5 6 3.1728 1.9369 -2.0831 6 1 4.0808 2.1002 -1.5027 7 6 3.1549 2.8484 -3.3344 8 6 3.6649 1.8905 -4.4411 9 8 3.0728 0.6219 -4.0879 10 6 3.1495 0.5069 -2.6571 11 16 2.6648 2.0309 1.3793 12 8 3.3557 3.2077 0.9830 13 8 3.2894 0.9593 2.0730 14 6 1.3197 2.5591 2.3872 15 6 1.0854 1.9524 3.6004 16 6 0.0282 2.3664 4.3955 17 6 -0.8043 3.3945 3.9803 18 6 -0.5846 4.0202 2.7746 19 6 0.4810 3.6030 1.9554 20 6 0.7119 4.2336 0.7111 21 1 1.7218 4.3666 0.3522 22 6 -0.3683 4.6854 -0.0555 23 7 -0.2201 5.7108 -0.8542 24 14 -2.0218 3.8243 0.0618 25 1 -2.0424 2.6638 -0.8643 26 1 -2.2359 3.3511 1.4531 27 1 -3.1017 4.7734 -0.3098 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.0405 1.9105 -1.7782 34 1 1.8846 3.2438 -0.9548 35 1 2.1431 3.1905 -3.5520 36 1 3.8314 3.6938 -3.2095 37 1 4.7528 1.8252 -4.4208 38 1 3.3193 2.2155 -5.4225 39 1 4.0612 -0.0202 -2.3760 40 1 2.2781 -0.0291 -2.2811 41 1 1.7278 1.1508 3.9339 42 1 -0.1484 1.8844 5.3457 43 1 -1.6253 3.7086 4.6077 44 1 -1.2313 4.8240 2.4553 45 1 -0.9686 6.0237 -1.3858 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601321121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:09 Heat of formation + Delta-G solvation = -98.275715 kcal Electronic energy + Delta-G solvation = -29836.785375 eV Core-core repulsion = 25946.074154 eV Total energy + Delta-G solvation = -3890.711221 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.40706 -37.86309 -36.44430 -36.40226 -34.94452 -33.91957 -32.52786 -30.74155 -30.10937 -29.90828 -28.81743 -25.68407 -25.14521 -22.39984 -22.27493 -21.69793 -21.20220 -20.41810 -18.09059 -17.78754 -17.20019 -16.39835 -16.34090 -15.94090 -15.52932 -15.37357 -14.80156 -14.44428 -14.25141 -13.81404 -13.55870 -13.44717 -13.30961 -13.01681 -12.73414 -12.47219 -12.26825 -12.17700 -12.04029 -11.93677 -11.44389 -11.40338 -11.28347 -11.20920 -11.18404 -11.07002 -10.98356 -10.83251 -10.61755 -10.54334 -10.29585 -10.11074 -10.05744 -9.55901 -9.39160 -9.34289 -8.48015 -8.18043 -7.73638 -7.30063 -4.87906 1.40680 2.09306 2.48963 2.91564 3.00717 3.06106 3.73550 3.75483 4.07864 4.17304 4.61986 4.77619 4.90461 5.01194 5.09202 5.18442 5.31189 5.35967 5.39536 5.58985 5.61978 5.70666 5.78890 5.83173 5.86754 5.92368 5.94304 5.98076 6.09853 6.17236 6.19293 6.19885 6.34711 6.46559 6.50158 6.58625 6.65118 6.70359 6.92019 6.99605 7.10441 7.16770 7.31565 7.45848 7.58021 7.81785 8.10568 8.31433 8.49967 9.67085 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012078 B = 0.006182 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.647224 B = 4528.084714 C = 5559.252844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.110 3.890 3 N -0.990 5.990 4 C 0.126 3.874 5 C -0.142 4.142 6 H 0.085 0.915 7 C -0.146 4.146 8 C 0.046 3.954 9 O -0.384 6.384 10 C 0.043 3.957 11 S 2.702 3.298 12 O -0.966 6.966 13 O -0.995 6.995 14 C -0.769 4.769 15 C 0.009 3.991 16 C -0.254 4.254 17 C -0.057 4.057 18 C -0.203 4.203 19 C 0.165 3.835 20 C -0.478 4.478 21 H 0.132 0.868 22 C 0.103 3.897 23 N -0.765 5.765 24 Si 0.863 3.137 25 H -0.260 1.260 26 H -0.221 1.221 27 H -0.276 1.276 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.120 0.880 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.151 -6.548 -4.287 7.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.016 4.016 3 N -0.825 5.825 4 C 0.001 3.999 5 C -0.162 4.162 6 H 0.104 0.896 7 C -0.185 4.185 8 C -0.030 4.030 9 O -0.303 6.303 10 C -0.033 4.033 11 S 2.800 3.200 12 O -0.957 6.957 13 O -0.986 6.986 14 C -0.863 4.863 15 C -0.011 4.011 16 C -0.274 4.274 17 C -0.076 4.076 18 C -0.222 4.222 19 C 0.161 3.839 20 C -0.504 4.504 21 H 0.149 0.851 22 C -0.123 4.123 23 N -0.386 5.386 24 Si 0.685 3.315 25 H -0.184 1.184 26 H -0.143 1.143 27 H -0.202 1.202 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.138 0.862 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.072 0.928 40 H 0.111 0.889 41 H 0.129 0.871 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.929 -6.452 -4.493 7.917 hybrid contribution -1.575 0.164 0.348 1.621 sum -0.646 -6.289 -4.145 7.559 Atomic orbital electron populations 1.22234 0.96328 1.01485 1.03343 1.21396 0.94456 0.82485 1.03229 1.57453 1.79164 1.20418 1.25436 1.21636 0.95550 0.98271 0.84493 1.23089 1.01304 0.94490 0.97324 0.89616 1.23112 1.03169 0.98459 0.93718 1.23541 0.97320 0.83414 0.98755 1.88831 1.81575 1.37966 1.21907 1.23583 1.01933 0.97136 0.80637 1.01152 0.74127 0.72565 0.72171 1.93498 1.72125 1.47884 1.82182 1.93441 1.74941 1.56536 1.73695 1.29976 1.28614 1.14130 1.13563 1.20353 0.94166 0.94697 0.91861 1.20496 1.00985 1.04406 1.01487 1.20841 0.96629 0.94529 0.95559 1.21243 1.02290 1.02964 0.95744 1.17008 0.88662 0.86394 0.91877 1.20228 0.97738 1.30540 1.01894 0.85084 1.26117 1.00762 0.91960 0.93444 1.69798 1.34949 1.15725 1.18112 0.86924 0.80427 0.81186 0.82960 1.18439 1.14292 1.20153 0.91592 0.92271 0.92234 0.90697 0.89428 0.90824 0.86193 0.89927 0.89797 0.92538 0.89278 0.92805 0.88851 0.87113 0.88310 0.88493 0.88036 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 10.09 37.16 0.37 -2.16 16 2 C 0.11 1.62 6.19 -4.04 -0.03 1.60 16 3 N -0.99 -17.48 2.75 -114.39 -0.31 -17.79 16 4 C 0.13 2.17 4.05 -4.05 -0.02 2.15 16 5 C -0.14 -2.16 3.29 -89.08 -0.29 -2.45 16 6 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 7 C -0.15 -1.99 6.71 -24.72 -0.17 -2.16 16 8 C 0.05 0.57 7.72 38.21 0.29 0.86 16 9 O -0.38 -5.61 11.52 -35.23 -0.41 -6.02 16 10 C 0.04 0.60 6.85 37.74 0.26 0.86 16 11 S 2.70 56.97 5.07 -107.50 -0.54 56.43 16 12 O -0.97 -22.74 14.65 -57.17 -0.84 -23.57 16 13 O -1.00 -21.68 15.71 -57.17 -0.90 -22.57 16 14 C -0.77 -17.16 5.96 -38.87 -0.23 -17.39 16 15 C 0.01 0.19 9.54 -39.66 -0.38 -0.19 16 16 C -0.25 -5.06 10.05 -39.29 -0.39 -5.46 16 17 C -0.06 -1.16 10.02 -39.66 -0.40 -1.55 16 18 C -0.20 -4.51 6.75 -38.87 -0.26 -4.77 16 19 C 0.17 3.86 4.87 -106.82 -0.52 3.34 16 20 C -0.48 -11.37 6.62 -37.74 -0.25 -11.62 16 21 H 0.13 3.34 4.39 -52.49 -0.23 3.11 16 22 C 0.10 2.32 5.18 -17.34 -0.09 2.23 16 23 N -0.77 -17.62 13.93 55.55 0.77 -16.85 16 24 Si 0.86 17.22 26.58 -169.99 -4.52 12.71 16 25 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 26 H -0.22 -4.46 5.24 56.52 0.30 -4.17 16 27 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.87 7.34 -51.93 -0.38 0.49 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.94 4.96 -51.93 -0.26 0.68 16 32 H 0.09 1.29 7.00 -51.93 -0.36 0.92 16 33 H 0.07 1.20 7.25 -51.93 -0.38 0.82 16 34 H 0.12 2.40 4.29 -51.93 -0.22 2.17 16 35 H 0.08 1.15 7.87 -51.93 -0.41 0.74 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.24 4.72 -51.93 -0.25 1.00 16 41 H 0.11 2.15 7.32 -52.48 -0.38 1.77 16 42 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.10 2.19 6.32 -52.49 -0.33 1.86 16 45 H 0.29 6.04 8.30 -40.82 -0.34 5.70 16 LS Contribution 356.40 15.07 5.37 5.37 Total: -1.00 -27.75 356.40 -9.72 -37.46 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -6.25 Total: 11.54 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: -2.10 Total: -36.70 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.46 Total: -34.64 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -2.14 Total: -52.17 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -4.52 Total: 12.71 kcal Atomic # 16 Polarization: 56.97 SS G_CDS: -0.54 Total: 56.43 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.75 -9.72 -37.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601321121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.812 kcal (2) G-P(sol) polarization free energy of solvation -27.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds