Wall clock time and date at job start Tue Mar 31 2020 22:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46924 * 2 1 4 4 C 1.46494 * 120.00434 * 285.90514 * 3 2 1 5 5 C 1.52996 * 109.47067 * 273.62046 * 4 3 2 6 6 H 1.08996 * 110.44020 * 306.45875 * 5 4 3 7 7 C 1.54816 * 110.48918 * 183.76675 * 5 4 3 8 8 C 1.54997 * 102.09274 * 220.44368 * 7 5 4 9 9 O 1.44384 * 103.49259 * 37.02243 * 8 7 5 10 10 C 1.43744 * 106.97572 * 319.94029 * 9 8 7 11 11 S 1.65607 * 119.99746 * 105.90520 * 3 2 1 12 12 O 1.42102 * 106.40129 * 164.78318 * 11 3 2 13 13 O 1.42107 * 106.40087 * 31.86639 * 11 3 2 14 14 C 1.76191 * 107.21810 * 278.32701 * 11 3 2 15 15 C 1.37642 * 120.13125 * 114.77117 * 14 11 3 16 16 C 1.38611 * 120.24876 * 179.97438 * 15 14 11 17 17 C 1.38652 * 120.50455 * 359.97438 * 16 15 14 18 18 C 1.37597 * 120.24633 * 359.67513 * 17 16 15 19 19 C 1.40698 * 120.12773 * 294.74863 * 14 11 3 20 20 C 1.41398 * 120.24383 * 0.02562 * 19 14 11 21 21 H 1.08000 * 120.00087 * 325.40863 * 20 19 14 22 22 C 1.39947 * 120.00066 * 145.40669 * 20 19 14 23 23 N 1.30816 * 120.00462 * 150.91007 * 22 20 19 24 24 Si 1.86806 * 119.99919 * 330.90873 * 22 20 19 25 25 H 1.48494 * 109.47207 * 274.68336 * 24 22 20 26 26 H 1.48503 * 109.46914 * 34.67922 * 24 22 20 27 27 H 1.48489 * 109.47319 * 154.67899 * 24 22 20 28 28 H 1.09002 * 109.47486 * 299.99724 * 1 2 3 29 29 H 1.09002 * 109.47045 * 60.00134 * 1 2 3 30 30 H 1.09003 * 109.46781 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47400 * 239.99803 * 2 1 3 32 32 H 1.09002 * 109.47045 * 119.99866 * 2 1 3 33 33 H 1.08999 * 109.46763 * 33.61740 * 4 3 2 34 34 H 1.08996 * 109.47389 * 153.61774 * 4 3 2 35 35 H 1.09003 * 110.90710 * 338.64174 * 7 5 4 36 36 H 1.08998 * 110.90730 * 102.24325 * 7 5 4 37 37 H 1.09001 * 110.62038 * 278.52380 * 8 7 5 38 38 H 1.09002 * 110.74992 * 155.58883 * 8 7 5 39 39 H 1.09002 * 109.87620 * 267.08879 * 10 9 8 40 40 H 1.08997 * 109.87991 * 145.93113 * 10 9 8 41 41 H 1.08004 * 119.87266 * 359.97438 * 15 14 11 42 42 H 1.07999 * 119.74459 * 179.97438 * 16 15 14 43 43 H 1.08002 * 119.87580 * 179.97438 * 17 16 15 44 44 H 1.08002 * 120.12909 * 180.30176 * 18 17 16 45 45 H 0.96998 * 120.00576 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9347 2.1878 -1.2201 5 6 3.1728 1.9369 -2.0831 6 1 4.0808 2.1002 -1.5027 7 6 3.1549 2.8484 -3.3344 8 6 3.6649 1.8905 -4.4411 9 8 3.0728 0.6219 -4.0879 10 6 3.1495 0.5069 -2.6571 11 16 2.6648 2.0309 1.3793 12 8 3.3557 3.2077 0.9830 13 8 3.2894 0.9593 2.0730 14 6 1.3197 2.5591 2.3872 15 6 1.0854 1.9524 3.6004 16 6 0.0282 2.3664 4.3955 17 6 -0.8043 3.3945 3.9803 18 6 -0.5846 4.0202 2.7746 19 6 0.4810 3.6030 1.9554 20 6 0.7119 4.2336 0.7111 21 1 1.7218 4.3666 0.3522 22 6 -0.3683 4.6854 -0.0555 23 7 -0.2201 5.7108 -0.8542 24 14 -2.0218 3.8243 0.0618 25 1 -2.0424 2.6638 -0.8643 26 1 -2.2359 3.3511 1.4531 27 1 -3.1017 4.7734 -0.3098 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.0405 1.9105 -1.7782 34 1 1.8846 3.2438 -0.9548 35 1 2.1431 3.1905 -3.5520 36 1 3.8314 3.6938 -3.2095 37 1 4.7528 1.8252 -4.4208 38 1 3.3193 2.2155 -5.4225 39 1 4.0612 -0.0202 -2.3760 40 1 2.2781 -0.0291 -2.2811 41 1 1.7278 1.1508 3.9339 42 1 -0.1484 1.8844 5.3457 43 1 -1.6253 3.7086 4.6077 44 1 -1.2313 4.8240 2.4553 45 1 -0.9686 6.0237 -1.3858 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601321121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:08 Heat of formation + Delta-G solvation = -115.551323 kcal Electronic energy + Delta-G solvation = -29837.534501 eV Core-core repulsion = 25946.074154 eV Total energy + Delta-G solvation = -3891.460347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.54521 -39.52297 -38.16367 -37.70203 -36.68986 -35.61760 -33.71700 -32.42687 -31.73034 -31.12462 -29.96684 -27.28270 -26.51847 -23.79937 -23.44706 -23.11004 -22.87985 -21.63487 -19.70910 -19.46716 -18.71733 -17.95764 -17.55928 -17.22901 -17.04815 -16.81326 -16.05732 -15.86097 -15.79442 -15.29998 -15.09600 -14.91577 -14.66559 -14.58790 -13.99070 -13.92607 -13.75619 -13.51707 -13.46398 -13.31404 -13.01473 -12.98755 -12.87195 -12.74089 -12.56783 -12.50812 -12.36118 -12.18068 -12.12346 -11.77347 -11.68434 -11.54637 -11.48194 -11.07668 -11.06245 -10.60384 -9.94562 -9.73450 -9.42853 -9.00245 -6.63183 -0.21477 0.41525 0.81770 1.31591 1.39787 1.45797 2.13389 2.21513 2.49323 2.96347 3.02720 3.32636 3.57268 3.68061 3.82161 3.92179 4.01048 4.21902 4.25492 4.35025 4.37065 4.38554 4.42285 4.52839 4.63172 4.68373 4.78647 4.80209 4.83193 4.84305 4.91932 4.96398 5.03578 5.05256 5.17329 5.21729 5.26222 5.33858 5.45346 5.46791 5.60445 5.78124 5.85870 5.90487 5.95318 6.13498 6.34817 6.60162 6.76084 8.02257 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012078 B = 0.006182 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.647224 B = 4528.084714 C = 5559.252844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.102 3.898 3 N -0.984 5.984 4 C 0.129 3.871 5 C -0.143 4.143 6 H 0.073 0.927 7 C -0.148 4.148 8 C 0.049 3.951 9 O -0.397 6.397 10 C 0.047 3.953 11 S 2.711 3.289 12 O -0.999 6.999 13 O -1.005 7.005 14 C -0.782 4.782 15 C -0.006 4.006 16 C -0.247 4.247 17 C -0.055 4.055 18 C -0.225 4.225 19 C 0.151 3.849 20 C -0.497 4.497 21 H 0.104 0.896 22 C 0.082 3.918 23 N -0.798 5.798 24 Si 0.905 3.095 25 H -0.251 1.251 26 H -0.223 1.223 27 H -0.269 1.269 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.124 0.876 42 H 0.133 0.867 43 H 0.131 0.869 44 H 0.102 0.898 45 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.987 -8.469 -4.143 9.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.022 4.022 3 N -0.821 5.821 4 C 0.004 3.996 5 C -0.164 4.164 6 H 0.091 0.909 7 C -0.186 4.186 8 C -0.027 4.027 9 O -0.316 6.316 10 C -0.029 4.029 11 S 2.809 3.191 12 O -0.989 6.989 13 O -0.996 6.996 14 C -0.876 4.876 15 C -0.025 4.025 16 C -0.267 4.267 17 C -0.073 4.073 18 C -0.245 4.245 19 C 0.146 3.854 20 C -0.524 4.524 21 H 0.122 0.878 22 C -0.141 4.141 23 N -0.420 5.420 24 Si 0.725 3.275 25 H -0.175 1.175 26 H -0.146 1.146 27 H -0.193 1.193 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.128 0.872 39 H 0.083 0.917 40 H 0.119 0.881 41 H 0.142 0.858 42 H 0.151 0.849 43 H 0.149 0.851 44 H 0.120 0.880 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.205 -8.371 -4.341 9.432 hybrid contribution -1.173 0.727 0.399 1.437 sum -1.378 -7.644 -3.941 8.710 Atomic orbital electron populations 1.22222 0.95814 1.03119 1.01992 1.21697 0.94939 0.80853 1.04708 1.57215 1.79149 1.21474 1.24242 1.21548 0.96973 0.96660 0.84395 1.23047 0.99579 0.96274 0.97507 0.90866 1.23126 1.03045 0.98740 0.93701 1.23673 0.98109 0.81978 0.98951 1.88812 1.81986 1.38885 1.21918 1.23559 1.02807 0.95987 0.80529 1.00706 0.73967 0.71903 0.72557 1.93454 1.73233 1.49510 1.82751 1.93414 1.75329 1.56467 1.74358 1.30221 1.28465 1.14270 1.14600 1.20664 0.95044 0.95184 0.91649 1.20943 0.99775 1.03641 1.02305 1.21247 0.97274 0.93836 0.94961 1.21382 1.02559 1.03794 0.96782 1.17175 0.89535 0.86735 0.91935 1.20078 0.97010 1.32389 1.02889 0.87830 1.26582 1.02706 0.91977 0.92806 1.69803 1.36191 1.16775 1.19222 0.86291 0.77656 0.80742 0.82825 1.17514 1.14581 1.19340 0.93806 0.92693 0.89102 0.87899 0.89204 0.89970 0.89216 0.90551 0.89644 0.91131 0.87247 0.91738 0.88138 0.85777 0.84915 0.85070 0.88024 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.68 10.09 71.98 0.73 -3.95 16 2 C 0.10 2.87 6.19 86.38 0.53 3.40 16 3 N -0.98 -34.77 2.75 -515.82 -1.42 -36.19 16 4 C 0.13 4.54 4.05 86.38 0.35 4.89 16 5 C -0.14 -4.37 3.29 -9.80 -0.03 -4.41 16 6 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 7 C -0.15 -4.00 6.71 31.90 0.21 -3.79 16 8 C 0.05 1.12 7.72 72.67 0.56 1.68 16 9 O -0.40 -10.82 11.52 -148.98 -1.72 -12.53 16 10 C 0.05 1.25 6.85 72.36 0.50 1.74 16 11 S 2.71 116.34 5.07 -56.49 -0.29 116.05 16 12 O -1.00 -49.20 14.65 -128.00 -1.88 -51.07 16 13 O -1.01 -43.66 15.71 -128.00 -2.01 -45.67 16 14 C -0.78 -35.04 5.96 22.73 0.14 -34.90 16 15 C -0.01 -0.23 9.54 22.22 0.21 -0.02 16 16 C -0.25 -9.17 10.05 22.46 0.23 -8.94 16 17 C -0.05 -2.09 10.02 22.22 0.22 -1.87 16 18 C -0.23 -9.89 6.75 22.73 0.15 -9.73 16 19 C 0.15 7.12 4.87 -21.29 -0.10 7.02 16 20 C -0.50 -24.50 6.62 23.46 0.16 -24.35 16 21 H 0.10 5.63 4.39 -2.91 -0.01 5.62 16 22 C 0.08 3.78 5.18 85.26 0.44 4.23 16 23 N -0.80 -37.82 13.93 21.83 0.30 -37.52 16 24 Si 0.91 35.17 26.58 68.60 1.82 37.00 16 25 H -0.25 -9.26 7.11 99.48 0.71 -8.56 16 26 H -0.22 -8.72 5.24 99.48 0.52 -8.20 16 27 H -0.27 -9.99 7.11 99.48 0.71 -9.29 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 1.52 7.34 -2.39 -0.02 1.50 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.10 2.32 4.96 -2.39 -0.01 2.31 16 32 H 0.09 2.50 7.00 -2.39 -0.02 2.48 16 33 H 0.08 2.68 7.25 -2.39 -0.02 2.66 16 34 H 0.09 3.79 4.29 -2.39 -0.01 3.78 16 35 H 0.08 2.14 7.87 -2.39 -0.02 2.13 16 36 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.10 2.45 4.72 -2.39 -0.01 2.44 16 41 H 0.12 4.63 7.32 -2.91 -0.02 4.61 16 42 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 43 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 44 H 0.10 4.35 6.32 -2.91 -0.02 4.33 16 45 H 0.30 12.69 8.30 -92.71 -0.77 11.92 16 Total: -1.00 -60.32 356.40 -0.06 -60.39 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: 0.83 Total: 38.54 kcal Atomic # 6 Polarization: -73.29 SS G_CDS: 4.29 Total: -69.00 kcal Atomic # 7 Polarization: -72.59 SS G_CDS: -1.12 Total: -73.71 kcal Atomic # 8 Polarization: -103.67 SS G_CDS: -5.60 Total: -109.28 kcal Atomic # 14 Polarization: 35.17 SS G_CDS: 1.82 Total: 37.00 kcal Atomic # 16 Polarization: 116.34 SS G_CDS: -0.29 Total: 116.05 kcal Total: -60.32 -0.06 -60.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601321121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.165 kcal (2) G-P(sol) polarization free energy of solvation -60.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds