Wall clock time and date at job start Tue Mar 31 2020 22:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47301 * 2 1 4 4 C 1.42903 * 114.00090 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46806 * 180.02562 * 4 3 2 6 6 H 1.08994 * 110.64282 * 56.68826 * 5 4 3 7 7 C 1.55157 * 110.72082 * 293.54730 * 5 4 3 8 8 C 1.54912 * 101.58117 * 206.13612 * 7 5 4 9 9 N 1.47425 * 104.83300 * 37.01195 * 8 7 5 10 10 S 1.65593 * 125.65305 * 155.90776 * 9 8 7 11 11 O 1.42102 * 106.40466 * 203.51254 * 10 9 8 12 12 O 1.42108 * 106.40183 * 336.43200 * 10 9 8 13 13 C 1.76203 * 107.22166 * 89.97307 * 10 9 8 14 14 C 1.37632 * 120.12662 * 114.99952 * 13 10 9 15 15 C 1.38624 * 120.24511 * 179.97438 * 14 13 10 16 16 C 1.38656 * 120.49868 * 0.02562 * 15 14 13 17 17 C 1.37599 * 120.25211 * 0.02989 * 16 15 14 18 18 C 1.40704 * 120.12307 * 294.72850 * 13 10 9 19 19 C 1.41394 * 120.24716 * 359.97438 * 18 13 10 20 20 H 1.08002 * 119.99813 * 332.41155 * 19 18 13 21 21 C 1.39938 * 120.00271 * 152.41544 * 19 18 13 22 22 N 1.30822 * 119.99895 * 344.19800 * 21 19 18 23 23 Si 1.86803 * 120.00100 * 164.19811 * 21 19 18 24 24 H 1.48492 * 109.47152 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47314 * 120.00331 * 23 21 19 26 26 H 1.48507 * 109.47105 * 240.00049 * 23 21 19 27 27 C 1.47029 * 108.70088 * 335.86960 * 9 8 7 28 28 H 1.08999 * 109.47177 * 59.99733 * 1 2 3 29 29 H 1.08999 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47180 * 299.99882 * 1 2 3 31 31 H 1.08999 * 109.47180 * 240.00118 * 2 1 3 32 32 H 1.09001 * 109.47600 * 119.99974 * 2 1 3 33 33 H 1.08996 * 109.46769 * 60.00213 * 4 3 2 34 34 H 1.08998 * 109.47211 * 299.99948 * 4 3 2 35 35 H 1.09000 * 111.00622 * 324.20592 * 7 5 4 36 36 H 1.08995 * 111.00779 * 88.02437 * 7 5 4 37 37 H 1.09008 * 110.36468 * 155.84491 * 8 7 5 38 38 H 1.08993 * 110.36793 * 278.17231 * 8 7 5 39 39 H 1.07992 * 119.88155 * 0.02562 * 14 13 10 40 40 H 1.07998 * 119.74585 * 180.02562 * 15 14 13 41 41 H 1.08005 * 119.87037 * 179.97438 * 16 15 14 42 42 H 1.07998 * 120.12678 * 179.97438 * 17 16 15 43 43 H 0.97009 * 120.00180 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.88316 * 241.64189 * 27 9 8 45 45 H 1.09004 * 109.88072 * 120.47856 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8253 2.9384 0.0012 6 1 3.3829 3.4538 0.8535 7 6 3.4072 3.6187 -1.3292 8 6 4.4301 4.7785 -1.4202 9 7 5.6859 4.2168 -0.8904 10 16 7.2101 4.7610 -1.2404 11 8 8.0897 3.6701 -1.0050 12 8 7.1198 5.4307 -2.4906 13 6 7.6122 5.9913 -0.0448 14 6 8.6377 5.7778 0.8480 15 6 8.9564 6.7443 1.7893 16 6 8.2476 7.9347 1.8434 17 6 7.2178 8.1691 0.9615 18 6 6.8898 7.1980 -0.0029 19 6 5.8384 7.4308 -0.9191 20 1 5.8512 6.9543 -1.8883 21 6 4.7812 8.2788 -0.5703 22 7 4.5931 8.6088 0.6816 23 14 3.6386 8.9395 -1.8922 24 1 4.0631 8.4214 -3.2175 25 1 2.2486 8.4996 -1.6102 26 1 3.6962 10.4234 -1.8998 27 6 5.3607 3.0937 0.0012 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8340 0.9765 -0.8892 34 1 3.8333 0.9767 0.8908 35 1 3.5175 2.9337 -2.1698 36 1 2.3878 3.9998 -1.2696 37 1 4.5609 5.0884 -2.4571 38 1 4.1040 5.6207 -0.8100 39 1 9.1966 4.8544 0.8146 40 1 9.7629 6.5685 2.4858 41 1 8.5043 8.6805 2.5812 42 1 6.6668 9.0969 1.0057 43 1 3.8600 9.1963 0.9235 44 1 5.7117 3.3081 1.0106 45 1 5.8258 2.1800 -0.3689 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601363337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:29 Heat of formation + Delta-G solvation = -110.037071 kcal Electronic energy + Delta-G solvation = -28464.772776 eV Core-core repulsion = 24573.551545 eV Total energy + Delta-G solvation = -3891.221231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -38.82959 -37.60604 -37.30313 -36.30845 -34.88726 -33.93975 -32.26286 -30.48288 -30.18118 -29.55629 -29.02253 -25.56994 -24.99218 -22.94009 -21.87810 -21.59610 -21.14610 -20.15894 -18.20196 -17.68071 -17.05131 -16.93572 -16.21718 -16.02847 -15.44336 -15.37063 -14.75551 -14.37846 -14.09836 -13.83977 -13.49885 -13.28028 -13.02696 -12.97653 -12.77136 -12.57803 -12.55141 -12.14781 -11.91722 -11.65405 -11.58823 -11.35247 -11.26144 -11.23629 -11.15882 -11.14478 -10.95484 -10.84483 -10.59508 -10.53239 -10.41535 -10.38326 -9.87876 -9.64894 -9.45259 -9.22527 -8.29833 -8.01273 -7.62801 -7.10128 -4.78186 1.46769 2.34138 2.69839 2.95996 3.04753 3.08147 3.52349 3.75078 3.92797 4.35024 4.72353 4.76851 4.85350 4.87945 4.95691 5.07850 5.18607 5.27947 5.36335 5.41292 5.49023 5.61173 5.67878 5.70385 5.73031 5.86002 5.92191 6.01679 6.04056 6.19721 6.22779 6.30164 6.38442 6.40506 6.63200 6.72436 6.79191 6.90678 7.02327 7.12704 7.17844 7.33643 7.51127 7.67521 7.80594 7.93554 8.34275 8.49109 8.64959 9.83465 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010857 B = 0.004450 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.467937 B = 6290.737607 C = 7534.087474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.386 6.386 4 C 0.073 3.927 5 C -0.096 4.096 6 H 0.093 0.907 7 C -0.120 4.120 8 C 0.119 3.881 9 N -1.005 6.005 10 S 2.720 3.280 11 O -0.995 6.995 12 O -0.970 6.970 13 C -0.779 4.779 14 C -0.002 4.002 15 C -0.251 4.251 16 C -0.076 4.076 17 C -0.160 4.160 18 C 0.191 3.809 19 C -0.471 4.471 20 H 0.114 0.886 21 C 0.083 3.917 22 N -0.772 5.772 23 Si 0.901 3.099 24 H -0.249 1.249 25 H -0.267 1.267 26 H -0.268 1.268 27 C 0.135 3.865 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.122 0.878 43 H 0.287 0.713 44 H 0.066 0.934 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.616 -10.150 0.160 12.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.305 6.305 4 C -0.004 4.004 5 C -0.115 4.115 6 H 0.111 0.889 7 C -0.159 4.159 8 C -0.006 4.006 9 N -0.841 5.841 10 S 2.820 3.180 11 O -0.986 6.986 12 O -0.961 6.961 13 C -0.874 4.874 14 C -0.022 4.022 15 C -0.271 4.271 16 C -0.095 4.095 17 C -0.179 4.179 18 C 0.186 3.814 19 C -0.499 4.499 20 H 0.132 0.868 21 C -0.139 4.139 22 N -0.395 5.395 23 Si 0.723 3.277 24 H -0.172 1.172 25 H -0.192 1.192 26 H -0.193 1.193 27 C 0.009 3.991 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.139 0.861 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.307 -10.161 -0.430 12.523 hybrid contribution -0.407 0.692 0.460 0.926 sum -7.714 -9.469 0.030 12.214 Atomic orbital electron populations 1.21735 0.93916 1.01992 1.03185 1.22426 0.95480 0.84167 0.99905 1.87896 1.21262 1.25950 1.95408 1.22493 0.81026 0.96615 1.00268 1.22166 0.95015 0.94221 1.00137 0.88874 1.22802 0.99289 0.97450 0.96357 1.22202 0.82429 0.96151 0.99805 1.58498 1.22218 1.43064 1.60294 1.00494 0.70353 0.72936 0.74217 1.93431 1.63429 1.54438 1.87260 1.93474 1.85587 1.75509 1.41512 1.29857 1.16422 1.15166 1.25988 1.20233 0.93242 0.96888 0.91799 1.20484 1.05211 0.97384 1.04056 1.20892 0.95397 0.95947 0.97299 1.21468 0.97856 1.00169 0.98454 1.17005 0.87687 0.87444 0.89234 1.20512 1.02963 1.23791 1.02621 0.86815 1.25995 0.98286 0.93635 0.96017 1.69824 1.26623 1.25292 1.17759 0.86331 0.79386 0.79680 0.82268 1.17156 1.19186 1.19269 1.21420 0.94081 0.89357 0.94237 0.91845 0.91346 0.91867 0.93566 0.93587 0.93003 0.93115 0.91224 0.90098 0.90491 0.89787 0.87506 0.88740 0.88861 0.86059 0.90198 0.91552 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.15 0.38 -0.81 16 2 C 0.06 0.53 6.66 37.15 0.25 0.77 16 3 O -0.39 -4.71 10.19 -35.23 -0.36 -5.07 16 4 C 0.07 0.85 5.22 37.16 0.19 1.04 16 5 C -0.10 -1.31 3.23 -88.79 -0.29 -1.60 16 6 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 7 C -0.12 -1.70 6.39 -24.58 -0.16 -1.86 16 8 C 0.12 2.11 5.41 -2.53 -0.01 2.10 16 9 N -1.00 -19.17 3.67 -111.41 -0.41 -19.58 16 10 S 2.72 61.01 5.30 -107.50 -0.57 60.45 16 11 O -0.99 -22.97 16.55 -57.17 -0.95 -23.91 16 12 O -0.97 -23.76 14.98 -57.17 -0.86 -24.61 16 13 C -0.78 -18.90 5.96 -38.87 -0.23 -19.13 16 14 C 0.00 -0.04 9.54 -39.66 -0.38 -0.42 16 15 C -0.25 -5.56 10.05 -39.28 -0.39 -5.96 16 16 C -0.08 -1.73 10.02 -39.66 -0.40 -2.13 16 17 C -0.16 -3.96 8.67 -38.87 -0.34 -4.29 16 18 C 0.19 4.86 5.55 -106.82 -0.59 4.26 16 19 C -0.47 -11.55 6.12 -37.75 -0.23 -11.78 16 20 H 0.11 2.82 4.64 -52.49 -0.24 2.57 16 21 C 0.08 1.88 4.85 -17.35 -0.08 1.79 16 22 N -0.77 -17.88 11.03 55.55 0.61 -17.27 16 23 Si 0.90 17.26 29.59 -169.99 -5.03 12.23 16 24 H -0.25 -4.84 7.11 56.52 0.40 -4.44 16 25 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 26 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 27 C 0.14 2.14 6.59 -3.06 -0.02 2.12 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.56 8.10 -51.93 -0.42 0.14 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.92 8.02 -51.93 -0.42 0.50 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.37 7.69 -51.92 -0.40 0.97 16 38 H 0.08 1.61 6.63 -51.93 -0.34 1.26 16 39 H 0.11 2.28 7.32 -52.49 -0.38 1.90 16 40 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.09 1.84 8.06 -52.48 -0.42 1.41 16 42 H 0.12 3.01 6.30 -52.49 -0.33 2.68 16 43 H 0.29 5.99 8.30 -40.82 -0.34 5.65 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.06 0.94 7.82 -51.93 -0.41 0.53 16 LS Contribution 371.39 15.07 5.60 5.60 Total: -1.00 -29.27 371.39 -10.99 -40.26 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.73 Total: 7.79 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: -2.30 Total: -35.88 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.20 Total: -36.85 kcal Atomic # 8 Polarization: -51.44 SS G_CDS: -2.16 Total: -53.60 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Atomic # 16 Polarization: 61.01 SS G_CDS: -0.57 Total: 60.45 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.27 -10.99 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601363337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.776 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds