Wall clock time and date at job start Tue Mar 31 2020 22:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47301 * 2 1 4 4 C 1.42903 * 114.00090 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46806 * 180.02562 * 4 3 2 6 6 H 1.08994 * 110.64282 * 56.68826 * 5 4 3 7 7 C 1.55157 * 110.72082 * 293.54730 * 5 4 3 8 8 C 1.54912 * 101.58117 * 206.13612 * 7 5 4 9 9 N 1.47425 * 104.83300 * 37.01195 * 8 7 5 10 10 S 1.65593 * 125.65305 * 155.90776 * 9 8 7 11 11 O 1.42102 * 106.40466 * 203.51254 * 10 9 8 12 12 O 1.42108 * 106.40183 * 336.43200 * 10 9 8 13 13 C 1.76203 * 107.22166 * 89.97307 * 10 9 8 14 14 C 1.37632 * 120.12662 * 114.99952 * 13 10 9 15 15 C 1.38624 * 120.24511 * 179.97438 * 14 13 10 16 16 C 1.38656 * 120.49868 * 0.02562 * 15 14 13 17 17 C 1.37599 * 120.25211 * 0.02989 * 16 15 14 18 18 C 1.40704 * 120.12307 * 294.72850 * 13 10 9 19 19 C 1.41394 * 120.24716 * 359.97438 * 18 13 10 20 20 H 1.08002 * 119.99813 * 332.41155 * 19 18 13 21 21 C 1.39938 * 120.00271 * 152.41544 * 19 18 13 22 22 N 1.30822 * 119.99895 * 344.19800 * 21 19 18 23 23 Si 1.86803 * 120.00100 * 164.19811 * 21 19 18 24 24 H 1.48492 * 109.47152 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47314 * 120.00331 * 23 21 19 26 26 H 1.48507 * 109.47105 * 240.00049 * 23 21 19 27 27 C 1.47029 * 108.70088 * 335.86960 * 9 8 7 28 28 H 1.08999 * 109.47177 * 59.99733 * 1 2 3 29 29 H 1.08999 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47180 * 299.99882 * 1 2 3 31 31 H 1.08999 * 109.47180 * 240.00118 * 2 1 3 32 32 H 1.09001 * 109.47600 * 119.99974 * 2 1 3 33 33 H 1.08996 * 109.46769 * 60.00213 * 4 3 2 34 34 H 1.08998 * 109.47211 * 299.99948 * 4 3 2 35 35 H 1.09000 * 111.00622 * 324.20592 * 7 5 4 36 36 H 1.08995 * 111.00779 * 88.02437 * 7 5 4 37 37 H 1.09008 * 110.36468 * 155.84491 * 8 7 5 38 38 H 1.08993 * 110.36793 * 278.17231 * 8 7 5 39 39 H 1.07992 * 119.88155 * 0.02562 * 14 13 10 40 40 H 1.07998 * 119.74585 * 180.02562 * 15 14 13 41 41 H 1.08005 * 119.87037 * 179.97438 * 16 15 14 42 42 H 1.07998 * 120.12678 * 179.97438 * 17 16 15 43 43 H 0.97009 * 120.00180 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.88316 * 241.64189 * 27 9 8 45 45 H 1.09004 * 109.88072 * 120.47856 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8253 2.9384 0.0012 6 1 3.3829 3.4538 0.8535 7 6 3.4072 3.6187 -1.3292 8 6 4.4301 4.7785 -1.4202 9 7 5.6859 4.2168 -0.8904 10 16 7.2101 4.7610 -1.2404 11 8 8.0897 3.6701 -1.0050 12 8 7.1198 5.4307 -2.4906 13 6 7.6122 5.9913 -0.0448 14 6 8.6377 5.7778 0.8480 15 6 8.9564 6.7443 1.7893 16 6 8.2476 7.9347 1.8434 17 6 7.2178 8.1691 0.9615 18 6 6.8898 7.1980 -0.0029 19 6 5.8384 7.4308 -0.9191 20 1 5.8512 6.9543 -1.8883 21 6 4.7812 8.2788 -0.5703 22 7 4.5931 8.6088 0.6816 23 14 3.6386 8.9395 -1.8922 24 1 4.0631 8.4214 -3.2175 25 1 2.2486 8.4996 -1.6102 26 1 3.6962 10.4234 -1.8998 27 6 5.3607 3.0937 0.0012 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8340 0.9765 -0.8892 34 1 3.8333 0.9767 0.8908 35 1 3.5175 2.9337 -2.1698 36 1 2.3878 3.9998 -1.2696 37 1 4.5609 5.0884 -2.4571 38 1 4.1040 5.6207 -0.8100 39 1 9.1966 4.8544 0.8146 40 1 9.7629 6.5685 2.4858 41 1 8.5043 8.6805 2.5812 42 1 6.6668 9.0969 1.0057 43 1 3.8600 9.1963 0.9235 44 1 5.7117 3.3081 1.0106 45 1 5.8258 2.1800 -0.3689 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601363337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:28 Heat of formation + Delta-G solvation = -127.622882 kcal Electronic energy + Delta-G solvation = -28465.535354 eV Core-core repulsion = 24573.551545 eV Total energy + Delta-G solvation = -3891.983809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.94235 -39.38197 -38.34968 -38.13132 -36.73348 -35.70483 -33.26664 -32.03979 -31.41257 -31.32657 -30.28966 -27.35311 -26.08538 -23.66074 -23.46447 -23.14223 -22.92682 -21.29386 -19.86133 -19.45498 -18.70727 -18.02935 -17.66717 -17.15512 -16.97740 -16.68394 -16.27473 -16.02270 -15.27953 -15.21131 -14.97140 -14.79133 -14.52899 -14.46769 -14.11015 -13.82891 -13.72263 -13.39619 -13.29618 -13.17309 -13.06202 -12.99692 -12.91781 -12.82004 -12.56517 -12.43540 -12.24185 -12.15012 -12.10562 -12.00337 -11.65593 -11.56668 -11.52078 -11.14827 -11.02218 -10.45982 -9.90437 -9.72922 -9.46200 -8.83386 -6.61538 -0.25400 0.53077 0.95593 1.37724 1.46872 1.52700 2.15836 2.25492 2.58953 2.71711 2.97888 3.43806 3.55364 3.68778 3.83355 4.01423 4.22681 4.30432 4.35767 4.39907 4.45011 4.47910 4.51001 4.56552 4.59989 4.65048 4.69714 4.79251 4.90496 4.96285 5.00520 5.08911 5.10771 5.15414 5.16098 5.24137 5.28461 5.31921 5.43217 5.52900 5.61854 5.72017 5.84737 5.99234 6.12535 6.34408 6.50803 6.68564 6.82729 8.13359 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010857 B = 0.004450 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.467937 B = 6290.737607 C = 7534.087474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.406 6.406 4 C 0.077 3.923 5 C -0.087 4.087 6 H 0.087 0.913 7 C -0.109 4.109 8 C 0.114 3.886 9 N -1.006 6.006 10 S 2.735 3.265 11 O -1.004 7.004 12 O -0.997 6.997 13 C -0.801 4.801 14 C -0.016 4.016 15 C -0.254 4.254 16 C -0.076 4.076 17 C -0.188 4.188 18 C 0.164 3.836 19 C -0.489 4.489 20 H 0.104 0.896 21 C 0.056 3.944 22 N -0.793 5.793 23 Si 0.955 3.045 24 H -0.257 1.257 25 H -0.248 1.248 26 H -0.261 1.261 27 C 0.125 3.875 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.297 0.703 44 H 0.063 0.937 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.762 -11.358 0.490 14.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.326 6.326 4 C 0.000 4.000 5 C -0.107 4.107 6 H 0.105 0.895 7 C -0.148 4.148 8 C -0.011 4.011 9 N -0.844 5.844 10 S 2.835 3.165 11 O -0.995 6.995 12 O -0.988 6.988 13 C -0.896 4.896 14 C -0.035 4.035 15 C -0.274 4.274 16 C -0.095 4.095 17 C -0.208 4.208 18 C 0.160 3.840 19 C -0.517 4.517 20 H 0.122 0.878 21 C -0.165 4.165 22 N -0.416 5.416 23 Si 0.775 3.225 24 H -0.181 1.181 25 H -0.172 1.172 26 H -0.185 1.185 27 C 0.000 4.000 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.131 0.869 43 H 0.108 0.892 44 H 0.082 0.918 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.440 -11.368 -0.071 14.158 hybrid contribution -0.032 1.029 0.424 1.113 sum -8.472 -10.339 0.353 13.371 Atomic orbital electron populations 1.21758 0.93139 1.03218 1.02567 1.22648 0.96169 0.82976 1.00888 1.87861 1.21273 1.27880 1.95606 1.22419 0.81236 0.94803 1.01518 1.22073 0.93155 0.95998 0.99524 0.89510 1.22772 0.98596 0.96225 0.97236 1.22266 0.82777 0.97190 0.98867 1.58264 1.21489 1.43712 1.60901 0.99855 0.70930 0.72321 0.73438 1.93402 1.64445 1.54366 1.87283 1.93429 1.86321 1.76124 1.42906 1.30198 1.17057 1.15680 1.26623 1.20558 0.93176 0.97840 0.91965 1.20879 1.05643 0.96726 1.04144 1.21240 0.94376 0.96815 0.97050 1.21531 0.99279 1.00100 0.99850 1.17321 0.88521 0.88150 0.90028 1.20552 1.03760 1.25092 1.02256 0.87787 1.26607 0.98983 0.93180 0.97706 1.69829 1.27354 1.25399 1.18983 0.85530 0.78441 0.79247 0.79293 1.18065 1.17194 1.18543 1.21693 0.95994 0.88740 0.93565 0.92419 0.89232 0.92505 0.92570 0.92569 0.91937 0.91699 0.89769 0.88914 0.91176 0.91651 0.86140 0.85511 0.85964 0.86950 0.89164 0.91820 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.28 71.98 0.74 -1.32 16 2 C 0.05 0.79 6.66 71.98 0.48 1.27 16 3 O -0.41 -9.02 10.19 -148.98 -1.52 -10.54 16 4 C 0.08 1.60 5.22 71.98 0.38 1.98 16 5 C -0.09 -2.27 3.23 -9.61 -0.03 -2.31 16 6 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 7 C -0.11 -2.95 6.39 31.99 0.20 -2.75 16 8 C 0.11 4.05 5.41 86.86 0.47 4.52 16 9 N -1.01 -38.50 3.67 -506.40 -1.86 -40.36 16 10 S 2.74 124.61 5.30 -56.49 -0.30 124.31 16 11 O -1.00 -46.35 16.55 -128.00 -2.12 -48.47 16 12 O -1.00 -50.17 14.98 -128.00 -1.92 -52.09 16 13 C -0.80 -39.59 5.96 22.73 0.14 -39.46 16 14 C -0.02 -0.72 9.54 22.22 0.21 -0.51 16 15 C -0.25 -10.95 10.05 22.46 0.23 -10.73 16 16 C -0.08 -3.40 10.02 22.22 0.22 -3.18 16 17 C -0.19 -9.46 8.67 22.73 0.20 -9.26 16 18 C 0.16 8.57 5.55 -21.29 -0.12 8.45 16 19 C -0.49 -24.65 6.12 23.46 0.14 -24.51 16 20 H 0.10 5.35 4.64 -2.91 -0.01 5.33 16 21 C 0.06 2.55 4.85 85.26 0.41 2.97 16 22 N -0.79 -37.05 11.03 21.82 0.24 -36.81 16 23 Si 0.96 35.25 29.59 68.60 2.03 37.28 16 24 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 25 H -0.25 -8.36 7.11 99.48 0.71 -7.66 16 26 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 27 C 0.13 3.87 6.59 86.73 0.57 4.44 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 2.04 8.02 -2.39 -0.02 2.02 16 36 H 0.09 2.30 8.14 -2.39 -0.02 2.29 16 37 H 0.07 2.55 7.69 -2.38 -0.02 2.53 16 38 H 0.07 2.56 6.63 -2.39 -0.02 2.54 16 39 H 0.12 5.08 7.32 -2.91 -0.02 5.06 16 40 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 41 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 42 H 0.11 5.73 6.30 -2.91 -0.02 5.71 16 43 H 0.30 12.37 8.30 -92.70 -0.77 11.60 16 44 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.08 2.22 7.82 -2.39 -0.02 2.20 16 Total: -1.00 -63.14 371.39 -0.22 -63.35 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: 0.99 Total: 33.70 kcal Atomic # 6 Polarization: -74.62 SS G_CDS: 4.24 Total: -70.38 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -1.62 Total: -77.17 kcal Atomic # 8 Polarization: -105.54 SS G_CDS: -5.55 Total: -111.09 kcal Atomic # 14 Polarization: 35.25 SS G_CDS: 2.03 Total: 37.28 kcal Atomic # 16 Polarization: 124.61 SS G_CDS: -0.30 Total: 124.31 kcal Total: -63.14 -0.22 -63.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601363337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.268 kcal (2) G-P(sol) polarization free energy of solvation -63.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds