Wall clock time and date at job start Tue Mar 31 2020 22:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47447 * 2 1 4 4 C 1.42902 * 114.00056 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.46845 * 179.97438 * 4 3 2 6 6 H 1.09007 * 110.64566 * 303.31078 * 5 4 3 7 7 C 1.55155 * 110.71969 * 66.45754 * 5 4 3 8 8 C 1.54916 * 101.58096 * 153.86386 * 7 5 4 9 9 N 1.47418 * 104.83267 * 322.98750 * 8 7 5 10 10 S 1.65604 * 125.65186 * 204.09205 * 9 8 7 11 11 O 1.42101 * 106.39942 * 330.22251 * 10 9 8 12 12 O 1.42095 * 106.40472 * 197.29979 * 10 9 8 13 13 C 1.76202 * 107.21500 * 83.75738 * 10 9 8 14 14 C 1.37634 * 120.12623 * 246.54499 * 13 10 9 15 15 C 1.38614 * 120.24705 * 179.97438 * 14 13 10 16 16 C 1.38657 * 120.50285 * 0.02562 * 15 14 13 17 17 C 1.37598 * 120.24577 * 0.02562 * 16 15 14 18 18 C 1.40698 * 120.12511 * 66.52947 * 13 10 9 19 19 C 1.41393 * 120.24783 * 0.03820 * 18 13 10 20 20 H 1.08002 * 119.99760 * 33.74003 * 19 18 13 21 21 C 1.39935 * 120.00428 * 213.73756 * 19 18 13 22 22 N 1.30827 * 119.99802 * 10.10202 * 21 19 18 23 23 Si 1.86805 * 120.00413 * 190.10562 * 21 19 18 24 24 H 1.48498 * 109.47316 * 89.99843 * 23 21 19 25 25 H 1.48496 * 109.46977 * 210.00136 * 23 21 19 26 26 H 1.48502 * 109.46728 * 329.99454 * 23 21 19 27 27 C 1.47030 * 108.70149 * 24.35880 * 9 8 7 28 28 H 1.08991 * 109.47269 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46619 * 300.00083 * 1 2 3 30 30 H 1.09005 * 109.46772 * 59.99821 * 1 2 3 31 31 H 1.09001 * 109.46969 * 239.99593 * 2 1 3 32 32 H 1.08998 * 109.47085 * 120.00316 * 2 1 3 33 33 H 1.09002 * 109.46875 * 60.00197 * 4 3 2 34 34 H 1.08998 * 109.47090 * 300.00015 * 4 3 2 35 35 H 1.08991 * 111.00748 * 35.78914 * 7 5 4 36 36 H 1.09003 * 111.00252 * 271.93551 * 7 5 4 37 37 H 1.08997 * 110.36498 * 204.14899 * 8 7 5 38 38 H 1.08997 * 110.45972 * 81.87517 * 8 7 5 39 39 H 1.07998 * 119.87569 * 0.02562 * 14 13 10 40 40 H 1.08002 * 119.74971 * 179.97438 * 15 14 13 41 41 H 1.07996 * 119.87664 * 180.27602 * 16 15 14 42 42 H 1.08004 * 120.12766 * 179.97438 * 17 16 15 43 43 H 0.97001 * 119.99960 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.88077 * 118.13138 * 27 9 8 45 45 H 1.09003 * 109.88017 * 239.29497 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.8255 2.9382 -0.0001 6 1 3.3837 3.4535 -0.8531 7 6 3.4064 3.6189 1.3297 8 6 4.4292 4.7787 1.4213 9 7 5.6853 4.2168 0.8925 10 16 7.2094 4.7612 1.2437 11 8 7.0881 6.1526 1.5053 12 8 8.0659 4.2305 0.2417 13 6 7.6946 4.0099 2.7619 14 6 7.8738 4.7809 3.8879 15 6 8.2549 4.1925 5.0836 16 6 8.4604 2.8234 5.1602 17 6 8.2882 2.0333 4.0470 18 6 7.9000 2.6196 2.8278 19 6 7.7194 1.8176 1.6775 20 1 7.9606 2.2116 0.7012 21 6 7.2284 0.5133 1.8038 22 7 6.7515 0.1021 2.9506 23 14 7.2537 -0.6407 0.3351 24 1 8.5353 -1.3906 0.3168 25 1 6.1221 -1.5968 0.4373 26 1 7.1237 0.1481 -0.9164 27 6 5.3606 3.0970 -0.0033 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8341 0.9763 -0.8892 34 1 3.8334 0.9766 0.8908 35 1 3.5159 2.9341 2.1706 36 1 2.3872 4.0006 1.2689 37 1 4.5592 5.0889 2.4581 38 1 4.1046 5.6220 0.8117 39 1 7.7160 5.8482 3.8397 40 1 8.3936 4.8052 5.9622 41 1 8.7529 2.3749 6.0982 42 1 8.4492 0.9671 4.1087 43 1 6.4114 -0.8021 3.0382 44 1 5.7106 3.3159 -1.0121 45 1 5.8268 2.1823 0.3628 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601363339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:32 Heat of formation + Delta-G solvation = -126.283261 kcal Electronic energy + Delta-G solvation = -29053.659334 eV Core-core repulsion = 25161.733615 eV Total energy + Delta-G solvation = -3891.925719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.95359 -39.38978 -38.36890 -38.12956 -36.72913 -35.65725 -33.28757 -32.03385 -31.44481 -31.35237 -30.27527 -27.35024 -26.11332 -23.72170 -23.55291 -23.10518 -22.89922 -21.32077 -19.85890 -19.47275 -18.66948 -18.02862 -17.65968 -17.17701 -17.04907 -16.67619 -16.30965 -16.01267 -15.37038 -15.08267 -15.01553 -14.84879 -14.55768 -14.47128 -14.10455 -13.90263 -13.75174 -13.35332 -13.30962 -13.19002 -13.04740 -13.00394 -12.92884 -12.87038 -12.54360 -12.44404 -12.24997 -12.17532 -12.13105 -11.98594 -11.64804 -11.63423 -11.51501 -11.20576 -11.00985 -10.53159 -9.91179 -9.71890 -9.40283 -8.79013 -6.62051 -0.25897 0.51016 0.94534 1.33489 1.41903 1.46433 2.13168 2.25413 2.61245 2.66267 2.97391 3.43219 3.51884 3.67968 3.84205 4.01231 4.16800 4.29060 4.32425 4.38630 4.42191 4.47254 4.48328 4.51784 4.60067 4.66374 4.69246 4.75279 4.86911 4.96517 5.01396 5.06018 5.09509 5.12717 5.15345 5.24057 5.27695 5.28931 5.41267 5.52313 5.62297 5.72013 5.85504 5.97047 6.12989 6.24980 6.50973 6.71174 6.81168 8.18678 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010729 B = 0.005383 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.007670 B = 5200.415519 C = 6275.837969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 O -0.396 6.396 4 C 0.073 3.927 5 C -0.085 4.085 6 H 0.109 0.891 7 C -0.107 4.107 8 C 0.116 3.884 9 N -1.004 6.004 10 S 2.735 3.265 11 O -1.004 7.004 12 O -0.996 6.996 13 C -0.792 4.792 14 C -0.019 4.019 15 C -0.246 4.246 16 C -0.076 4.076 17 C -0.180 4.180 18 C 0.172 3.828 19 C -0.499 4.499 20 H 0.104 0.896 21 C 0.058 3.942 22 N -0.801 5.801 23 Si 0.939 3.061 24 H -0.263 1.263 25 H -0.252 1.252 26 H -0.245 1.245 27 C 0.114 3.886 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.039 0.961 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.121 0.879 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.109 0.891 43 H 0.294 0.706 44 H 0.071 0.929 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.093 -2.285 -4.142 12.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.031 4.031 3 O -0.315 6.315 4 C -0.004 4.004 5 C -0.105 4.105 6 H 0.127 0.873 7 C -0.146 4.146 8 C -0.009 4.009 9 N -0.842 5.842 10 S 2.833 3.167 11 O -0.995 6.995 12 O -0.987 6.987 13 C -0.886 4.886 14 C -0.039 4.039 15 C -0.266 4.266 16 C -0.094 4.094 17 C -0.200 4.200 18 C 0.168 3.832 19 C -0.528 4.528 20 H 0.122 0.878 21 C -0.161 4.161 22 N -0.425 5.425 23 Si 0.759 3.241 24 H -0.188 1.188 25 H -0.175 1.175 26 H -0.168 1.168 27 C -0.011 4.011 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.124 0.876 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.139 0.861 40 H 0.147 0.853 41 H 0.141 0.859 42 H 0.127 0.873 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.779 -1.691 -4.545 11.820 hybrid contribution 0.621 -1.350 0.530 1.577 sum -10.158 -3.041 -4.015 11.338 Atomic orbital electron populations 1.21728 0.92178 1.03321 1.02924 1.22673 0.96810 0.83201 1.00386 1.87811 1.20678 1.27531 1.95519 1.22399 0.81370 0.96260 1.00372 1.22114 0.93189 0.94983 1.00225 0.87289 1.22693 0.99203 0.96209 0.96462 1.22172 0.82684 0.97006 0.99040 1.58252 1.21070 1.45594 1.59330 0.99914 0.71458 0.71633 0.73662 1.93417 1.86804 1.32178 1.87098 1.93420 1.65220 1.80583 1.59443 1.30301 1.32537 1.05759 1.19970 1.20591 0.93045 0.98160 0.92110 1.20921 1.12764 0.95096 0.97804 1.21260 0.96287 0.94178 0.97709 1.21486 1.05074 0.99294 0.94138 1.17304 0.83021 0.89120 0.93744 1.20445 1.38258 0.98523 0.95526 0.87820 1.26484 0.91516 0.98620 0.99466 1.69809 1.26721 1.19411 1.26517 0.85819 0.79988 0.78627 0.79663 1.18773 1.17547 1.16808 1.21963 0.95947 0.89953 0.93266 0.89355 0.92278 0.91675 0.92642 0.93888 0.92294 0.94254 0.92280 0.87629 0.91468 0.89537 0.86063 0.85344 0.85851 0.87316 0.89486 0.91067 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 10.28 71.98 0.74 -1.60 16 2 C 0.05 0.97 6.66 71.98 0.48 1.44 16 3 O -0.40 -10.30 10.19 -148.98 -1.52 -11.82 16 4 C 0.07 2.02 5.23 71.98 0.38 2.40 16 5 C -0.09 -2.38 3.22 -9.60 -0.03 -2.41 16 6 H 0.11 2.57 8.14 -2.38 -0.02 2.55 16 7 C -0.11 -2.97 6.39 31.99 0.20 -2.76 16 8 C 0.12 3.60 7.05 86.86 0.61 4.21 16 9 N -1.00 -38.36 3.68 -506.40 -1.86 -40.23 16 10 S 2.73 123.94 5.32 -56.49 -0.30 123.64 16 11 O -1.00 -46.52 16.64 -128.00 -2.13 -48.65 16 12 O -1.00 -49.65 15.09 -128.00 -1.93 -51.58 16 13 C -0.79 -38.54 5.97 22.73 0.14 -38.41 16 14 C -0.02 -0.87 9.53 22.22 0.21 -0.66 16 15 C -0.25 -10.38 10.05 22.46 0.23 -10.15 16 16 C -0.08 -3.31 10.02 22.22 0.22 -3.08 16 17 C -0.18 -8.91 8.63 22.73 0.20 -8.72 16 18 C 0.17 8.85 5.48 -21.29 -0.12 8.74 16 19 C -0.50 -24.88 6.04 23.46 0.14 -24.74 16 20 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 21 C 0.06 2.64 4.78 85.25 0.41 3.05 16 22 N -0.80 -37.03 11.17 21.82 0.24 -36.79 16 23 Si 0.94 34.38 29.07 68.60 1.99 36.37 16 24 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 25 H -0.25 -8.30 7.11 99.48 0.71 -7.59 16 26 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 27 C 0.11 3.99 6.20 86.73 0.54 4.53 16 28 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.04 1.24 8.11 -2.39 -0.02 1.22 16 35 H 0.06 1.87 8.02 -2.39 -0.02 1.85 16 36 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.12 5.04 7.32 -2.91 -0.02 5.02 16 40 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 41 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 42 H 0.11 5.47 6.60 -2.91 -0.02 5.45 16 43 H 0.29 12.23 8.30 -92.71 -0.77 11.46 16 44 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.07 2.86 4.39 -2.39 -0.01 2.85 16 Total: -1.00 -61.42 371.63 -0.18 -61.59 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: 0.99 Total: 35.62 kcal Atomic # 6 Polarization: -72.51 SS G_CDS: 4.34 Total: -68.16 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -1.62 Total: -77.01 kcal Atomic # 8 Polarization: -106.47 SS G_CDS: -5.58 Total: -112.05 kcal Atomic # 14 Polarization: 34.38 SS G_CDS: 1.99 Total: 36.37 kcal Atomic # 16 Polarization: 123.94 SS G_CDS: -0.30 Total: 123.64 kcal Total: -61.42 -0.18 -61.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601363339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.690 kcal (2) G-P(sol) polarization free energy of solvation -61.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds