Wall clock time and date at job start Tue Mar 31 2020 23:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99743 * 2 1 4 4 C 1.53002 * 109.47024 * 277.84855 * 3 2 1 5 5 O 1.42902 * 109.47155 * 64.99909 * 4 3 2 6 6 C 1.42901 * 113.99825 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46750 * 180.02562 * 6 5 4 8 8 C 1.53008 * 117.49650 * 243.62288 * 7 6 5 9 9 C 1.53000 * 59.99951 * 252.51127 * 8 7 6 10 10 S 1.65596 * 120.00212 * 180.02562 * 2 1 3 11 11 O 1.42098 * 106.40423 * 32.34817 * 10 2 1 12 12 O 1.42102 * 106.40355 * 165.27006 * 10 2 1 13 13 C 1.76206 * 107.21722 * 278.80878 * 10 2 1 14 14 C 1.37634 * 120.12656 * 114.78255 * 13 10 2 15 15 C 1.38617 * 120.24550 * 179.97438 * 14 13 10 16 16 C 1.38654 * 120.49986 * 0.02562 * 15 14 13 17 17 C 1.37593 * 120.25356 * 0.02562 * 16 15 14 18 18 C 1.40695 * 120.12607 * 294.50840 * 13 10 2 19 19 C 1.41396 * 120.24486 * 359.97438 * 18 13 10 20 20 H 1.08002 * 120.00190 * 326.78486 * 19 18 13 21 21 C 1.39951 * 120.00013 * 146.78175 * 19 18 13 22 22 N 1.30818 * 120.00085 * 350.21587 * 21 19 18 23 23 Si 1.86805 * 119.99672 * 170.21803 * 21 19 18 24 24 H 1.48498 * 109.47016 * 90.00419 * 23 21 19 25 25 H 1.48505 * 109.46649 * 209.99569 * 23 21 19 26 26 H 1.48498 * 109.47287 * 329.99684 * 23 21 19 27 27 H 1.09001 * 109.47116 * 90.00119 * 1 2 3 28 28 H 1.08997 * 109.46785 * 210.00042 * 1 2 3 29 29 H 1.08992 * 109.47193 * 330.00170 * 1 2 3 30 30 H 1.08998 * 109.46971 * 157.85257 * 3 2 1 31 31 H 1.08993 * 109.47540 * 37.84788 * 3 2 1 32 32 H 1.09004 * 109.47366 * 305.00283 * 4 3 2 33 33 H 1.08997 * 109.47041 * 185.00042 * 4 3 2 34 34 H 1.09001 * 109.47204 * 60.00442 * 6 5 4 35 35 H 1.09000 * 109.47561 * 299.99964 * 6 5 4 36 36 H 1.09001 * 115.55395 * 29.32908 * 7 6 5 37 37 H 1.09002 * 117.49657 * 359.97438 * 8 7 6 38 38 H 1.08993 * 117.49837 * 145.02118 * 8 7 6 39 39 H 1.09006 * 117.50107 * 252.51109 * 9 8 7 40 40 H 1.08998 * 117.50258 * 107.49095 * 9 8 7 41 41 H 1.08000 * 119.87759 * 0.02562 * 14 13 10 42 42 H 1.08001 * 119.74854 * 180.02562 * 15 14 13 43 43 H 1.08005 * 119.87242 * 179.97438 * 16 15 14 44 44 H 1.08000 * 120.13111 * 179.97438 * 17 16 15 45 45 H 0.96998 * 120.00112 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.2818 1.8089 -1.4290 5 8 0.9697 2.1299 -1.8952 6 6 0.9362 2.6461 -3.2273 7 6 -0.5105 2.9536 -3.6188 8 6 -1.1142 2.1547 -4.7757 9 6 -0.7482 3.6273 -4.9718 10 16 2.2930 -1.4341 -0.0006 11 8 1.4964 -2.3571 -0.7304 12 8 3.6354 -1.1222 -0.3471 13 6 2.3306 -2.0154 1.6623 14 6 1.6784 -3.1786 2.0024 15 6 1.7068 -3.6385 3.3098 16 6 2.3904 -2.9339 4.2889 17 6 3.0487 -1.7680 3.9719 18 6 3.0324 -1.2952 2.6464 19 6 3.7114 -0.1022 2.3074 20 1 4.1609 0.0046 1.3312 21 6 3.8011 0.9403 3.2368 22 7 3.1008 0.8943 4.3409 23 14 4.9206 2.3974 2.9008 24 1 4.1631 3.4456 2.1709 25 1 5.4143 2.9494 4.1880 26 1 6.0741 1.9557 2.0766 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 3.2034 1.1075 0.3874 31 1 1.6764 1.9891 0.6305 32 1 2.7230 1.0524 -2.0780 33 1 2.9016 2.7054 -1.4425 34 1 1.3496 1.9072 -3.9138 35 1 1.5280 3.5601 -3.2777 36 1 -1.1719 3.2277 -2.7970 37 1 -0.4805 1.4104 -5.2581 38 1 -2.1730 1.9030 -4.7150 39 1 -1.5663 4.3445 -5.0401 40 1 0.1260 3.8516 -5.5829 41 1 1.1431 -3.7357 1.2477 42 1 1.1925 -4.5525 3.5677 43 1 2.4056 -3.3012 5.3044 44 1 3.5802 -1.2205 4.7362 45 1 3.1632 1.6166 4.9852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601370007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:57 Heat of formation + Delta-G solvation = -75.614381 kcal Electronic energy + Delta-G solvation = -28504.505186 eV Core-core repulsion = 24614.776635 eV Total energy + Delta-G solvation = -3889.728551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -38.47829 -37.62815 -36.90456 -36.30736 -35.16930 -34.85177 -33.86600 -30.24693 -29.73442 -29.57016 -26.89181 -25.54205 -25.01863 -22.55478 -22.10625 -21.65455 -21.16025 -20.67705 -18.12007 -17.63321 -17.23553 -16.50955 -16.23139 -15.86303 -15.61152 -15.29726 -14.90795 -14.65082 -14.35412 -13.93633 -13.69499 -13.30063 -13.18330 -12.77891 -12.69693 -12.52060 -12.19928 -12.01909 -11.96119 -11.71059 -11.41428 -11.35094 -11.26106 -11.23179 -11.14974 -11.10234 -10.82735 -10.70255 -10.60852 -10.57911 -10.38519 -10.21468 -9.88269 -9.48037 -9.37498 -9.23877 -8.34076 -8.02992 -7.58188 -7.05427 -4.81196 1.51530 2.31737 2.69031 2.93410 2.99025 3.05399 3.48378 3.73249 3.83709 3.91967 4.37424 4.67851 4.74154 4.74576 4.94627 5.19707 5.23305 5.28373 5.33604 5.43727 5.50224 5.53881 5.60491 5.67447 5.72200 5.74963 5.92628 5.99710 6.02416 6.10590 6.15626 6.21452 6.36542 6.39014 6.42536 6.63404 6.78977 6.93901 7.03309 7.28212 7.32340 7.39396 7.49342 7.66911 7.77370 7.91582 8.31079 8.49805 8.62585 9.89529 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012342 B = 0.004407 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.107784 B = 6352.383623 C = 7848.405691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.987 5.987 3 C 0.126 3.874 4 C 0.041 3.959 5 O -0.376 6.376 6 C 0.090 3.910 7 C -0.149 4.149 8 C -0.177 4.177 9 C -0.177 4.177 10 S 2.703 3.297 11 O -0.994 6.994 12 O -0.976 6.976 13 C -0.772 4.772 14 C -0.006 4.006 15 C -0.245 4.245 16 C -0.077 4.077 17 C -0.154 4.154 18 C 0.197 3.803 19 C -0.486 4.486 20 H 0.115 0.885 21 C 0.083 3.917 22 N -0.781 5.781 23 Si 0.898 3.102 24 H -0.260 1.260 25 H -0.272 1.272 26 H -0.251 1.251 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.121 0.879 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.351 6.606 -8.634 11.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.823 5.823 3 C 0.000 4.000 4 C -0.038 4.038 5 O -0.295 6.295 6 C 0.013 3.987 7 C -0.167 4.167 8 C -0.214 4.214 9 C -0.214 4.214 10 S 2.801 3.199 11 O -0.985 6.985 12 O -0.966 6.966 13 C -0.867 4.867 14 C -0.026 4.026 15 C -0.265 4.265 16 C -0.096 4.096 17 C -0.174 4.174 18 C 0.192 3.808 19 C -0.514 4.514 20 H 0.133 0.867 21 C -0.138 4.138 22 N -0.405 5.405 23 Si 0.721 3.279 24 H -0.185 1.185 25 H -0.197 1.197 26 H -0.175 1.175 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.136 0.864 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.132 0.868 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.126 0.874 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.139 0.861 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.237 6.353 -9.074 11.860 hybrid contribution 0.404 0.733 0.798 1.156 sum -3.833 7.087 -8.276 11.550 Atomic orbital electron populations 1.21233 0.78932 1.02003 1.01172 1.57145 1.14681 1.20676 1.89765 1.21600 0.99473 0.85464 0.93444 1.23229 0.84223 0.98899 0.97413 1.87927 1.28480 1.84191 1.28945 1.21967 0.94527 0.97253 0.84977 1.22142 0.97254 1.04796 0.92518 1.23063 1.01844 0.94183 1.02342 1.22959 1.03402 0.95990 0.99098 1.01085 0.72577 0.71574 0.74646 1.93442 1.71054 1.62342 1.71640 1.93457 1.35195 1.83872 1.84120 1.29988 1.21412 1.11974 1.23297 1.20275 0.93424 0.93098 0.95801 1.20528 1.09680 1.02496 0.93777 1.20924 0.96280 0.95263 0.97139 1.21464 1.02748 0.95512 0.97664 1.17008 0.84368 0.88969 0.90410 1.20418 1.30349 0.98071 1.02576 0.86735 1.25942 0.93965 1.00187 0.93718 1.69774 1.31039 1.31990 1.07663 0.86424 0.81449 0.80384 0.79619 1.18461 1.19690 1.17471 0.92864 0.92248 0.91659 0.86392 0.90146 0.93008 0.92595 0.93462 0.93272 0.86848 0.88675 0.88651 0.88595 0.88842 0.87379 0.88603 0.88738 0.86127 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.92 9.56 59.85 0.57 2.50 16 2 N -0.99 -19.19 3.15 -121.76 -0.38 -19.57 16 3 C 0.13 2.26 5.29 -4.04 -0.02 2.24 16 4 C 0.04 0.63 6.28 37.16 0.23 0.87 16 5 O -0.38 -5.66 9.36 -35.23 -0.33 -5.99 16 6 C 0.09 1.09 6.22 37.16 0.23 1.32 16 7 C -0.15 -1.60 6.06 -90.61 -0.55 -2.15 16 8 C -0.18 -1.70 10.18 -26.73 -0.27 -1.97 16 9 C -0.18 -1.52 10.25 -26.73 -0.27 -1.79 16 10 S 2.70 60.65 5.00 -107.50 -0.54 60.11 16 11 O -0.99 -23.28 16.36 -57.17 -0.94 -24.22 16 12 O -0.98 -23.30 14.56 -57.17 -0.83 -24.13 16 13 C -0.77 -18.61 5.96 -38.88 -0.23 -18.85 16 14 C -0.01 -0.14 9.53 -39.66 -0.38 -0.52 16 15 C -0.24 -5.36 10.05 -39.29 -0.39 -5.75 16 16 C -0.08 -1.72 10.02 -39.66 -0.40 -2.12 16 17 C -0.15 -3.78 8.63 -38.87 -0.34 -4.11 16 18 C 0.20 4.96 5.50 -106.82 -0.59 4.37 16 19 C -0.49 -11.75 6.43 -37.74 -0.24 -12.00 16 20 H 0.12 2.76 4.06 -52.49 -0.21 2.55 16 21 C 0.08 1.87 5.25 -17.34 -0.09 1.78 16 22 N -0.78 -18.13 11.09 55.55 0.62 -17.52 16 23 Si 0.90 16.89 29.57 -169.99 -5.03 11.86 16 24 H -0.26 -4.62 7.11 56.52 0.40 -4.21 16 25 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 26 H -0.25 -4.77 7.11 56.52 0.40 -4.37 16 27 H 0.05 0.86 7.98 -51.93 -0.41 0.44 16 28 H 0.06 1.01 8.00 -51.93 -0.42 0.59 16 29 H 0.06 1.01 7.97 -51.93 -0.41 0.60 16 30 H 0.12 2.28 4.42 -51.93 -0.23 2.05 16 31 H 0.08 1.37 8.01 -51.93 -0.42 0.95 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.56 7.88 -51.93 -0.41 0.15 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.09 0.91 8.03 -51.93 -0.42 0.49 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.11 2.30 7.32 -52.49 -0.38 1.92 16 42 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 43 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 44 H 0.12 2.97 6.52 -52.49 -0.34 2.63 16 45 H 0.29 6.03 8.30 -40.82 -0.34 5.70 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -28.54 377.24 -11.08 -39.62 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.59 Total: 10.35 kcal Atomic # 6 Polarization: -33.45 SS G_CDS: -2.74 Total: -36.19 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.23 Total: -37.09 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -2.10 Total: -54.34 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.03 Total: 11.86 kcal Atomic # 16 Polarization: 60.65 SS G_CDS: -0.54 Total: 60.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.54 -11.08 -39.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601370007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.998 kcal (2) G-P(sol) polarization free energy of solvation -28.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds