Wall clock time and date at job start Tue Mar 31 2020 23:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99743 * 2 1 4 4 C 1.53002 * 109.47024 * 277.84855 * 3 2 1 5 5 O 1.42902 * 109.47155 * 64.99909 * 4 3 2 6 6 C 1.42901 * 113.99825 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46750 * 180.02562 * 6 5 4 8 8 C 1.53008 * 117.49650 * 243.62288 * 7 6 5 9 9 C 1.53000 * 59.99951 * 252.51127 * 8 7 6 10 10 S 1.65596 * 120.00212 * 180.02562 * 2 1 3 11 11 O 1.42098 * 106.40423 * 32.34817 * 10 2 1 12 12 O 1.42102 * 106.40355 * 165.27006 * 10 2 1 13 13 C 1.76206 * 107.21722 * 278.80878 * 10 2 1 14 14 C 1.37634 * 120.12656 * 114.78255 * 13 10 2 15 15 C 1.38617 * 120.24550 * 179.97438 * 14 13 10 16 16 C 1.38654 * 120.49986 * 0.02562 * 15 14 13 17 17 C 1.37593 * 120.25356 * 0.02562 * 16 15 14 18 18 C 1.40695 * 120.12607 * 294.50840 * 13 10 2 19 19 C 1.41396 * 120.24486 * 359.97438 * 18 13 10 20 20 H 1.08002 * 120.00190 * 326.78486 * 19 18 13 21 21 C 1.39951 * 120.00013 * 146.78175 * 19 18 13 22 22 N 1.30818 * 120.00085 * 350.21587 * 21 19 18 23 23 Si 1.86805 * 119.99672 * 170.21803 * 21 19 18 24 24 H 1.48498 * 109.47016 * 90.00419 * 23 21 19 25 25 H 1.48505 * 109.46649 * 209.99569 * 23 21 19 26 26 H 1.48498 * 109.47287 * 329.99684 * 23 21 19 27 27 H 1.09001 * 109.47116 * 90.00119 * 1 2 3 28 28 H 1.08997 * 109.46785 * 210.00042 * 1 2 3 29 29 H 1.08992 * 109.47193 * 330.00170 * 1 2 3 30 30 H 1.08998 * 109.46971 * 157.85257 * 3 2 1 31 31 H 1.08993 * 109.47540 * 37.84788 * 3 2 1 32 32 H 1.09004 * 109.47366 * 305.00283 * 4 3 2 33 33 H 1.08997 * 109.47041 * 185.00042 * 4 3 2 34 34 H 1.09001 * 109.47204 * 60.00442 * 6 5 4 35 35 H 1.09000 * 109.47561 * 299.99964 * 6 5 4 36 36 H 1.09001 * 115.55395 * 29.32908 * 7 6 5 37 37 H 1.09002 * 117.49657 * 359.97438 * 8 7 6 38 38 H 1.08993 * 117.49837 * 145.02118 * 8 7 6 39 39 H 1.09006 * 117.50107 * 252.51109 * 9 8 7 40 40 H 1.08998 * 117.50258 * 107.49095 * 9 8 7 41 41 H 1.08000 * 119.87759 * 0.02562 * 14 13 10 42 42 H 1.08001 * 119.74854 * 180.02562 * 15 14 13 43 43 H 1.08005 * 119.87242 * 179.97438 * 16 15 14 44 44 H 1.08000 * 120.13111 * 179.97438 * 17 16 15 45 45 H 0.96998 * 120.00112 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.2818 1.8089 -1.4290 5 8 0.9697 2.1299 -1.8952 6 6 0.9362 2.6461 -3.2273 7 6 -0.5105 2.9536 -3.6188 8 6 -1.1142 2.1547 -4.7757 9 6 -0.7482 3.6273 -4.9718 10 16 2.2930 -1.4341 -0.0006 11 8 1.4964 -2.3571 -0.7304 12 8 3.6354 -1.1222 -0.3471 13 6 2.3306 -2.0154 1.6623 14 6 1.6784 -3.1786 2.0024 15 6 1.7068 -3.6385 3.3098 16 6 2.3904 -2.9339 4.2889 17 6 3.0487 -1.7680 3.9719 18 6 3.0324 -1.2952 2.6464 19 6 3.7114 -0.1022 2.3074 20 1 4.1609 0.0046 1.3312 21 6 3.8011 0.9403 3.2368 22 7 3.1008 0.8943 4.3409 23 14 4.9206 2.3974 2.9008 24 1 4.1631 3.4456 2.1709 25 1 5.4143 2.9494 4.1880 26 1 6.0741 1.9557 2.0766 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 3.2034 1.1075 0.3874 31 1 1.6764 1.9891 0.6305 32 1 2.7230 1.0524 -2.0780 33 1 2.9016 2.7054 -1.4425 34 1 1.3496 1.9072 -3.9138 35 1 1.5280 3.5601 -3.2777 36 1 -1.1719 3.2277 -2.7970 37 1 -0.4805 1.4104 -5.2581 38 1 -2.1730 1.9030 -4.7150 39 1 -1.5663 4.3445 -5.0401 40 1 0.1260 3.8516 -5.5829 41 1 1.1431 -3.7357 1.2477 42 1 1.1925 -4.5525 3.5677 43 1 2.4056 -3.3012 5.3044 44 1 3.5802 -1.2205 4.7362 45 1 3.1632 1.6166 4.9852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601370007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:56 Heat of formation + Delta-G solvation = -91.546533 kcal Electronic energy + Delta-G solvation = -28505.196056 eV Core-core repulsion = 24614.776635 eV Total energy + Delta-G solvation = -3890.419421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.52158 -39.38026 -38.19274 -37.83964 -36.71200 -36.45668 -35.60052 -32.01907 -31.38870 -30.99052 -27.94949 -27.28073 -26.37288 -23.51603 -23.39839 -23.22073 -22.93027 -21.52437 -19.81168 -19.38005 -18.77816 -17.90367 -17.54078 -17.30287 -17.16246 -16.71078 -16.17174 -16.03166 -15.63126 -15.39934 -15.01724 -14.96351 -14.72474 -14.43809 -13.97252 -13.90575 -13.73674 -13.54639 -13.41488 -13.03424 -13.00122 -12.93092 -12.85238 -12.70694 -12.50597 -12.39780 -12.35951 -12.16244 -12.03097 -11.87983 -11.62799 -11.32288 -11.15177 -11.13696 -11.00290 -10.40672 -9.91310 -9.74348 -9.39190 -8.75998 -6.61864 -0.20766 0.52500 0.97027 1.40129 1.47762 1.54194 2.17645 2.25639 2.57667 2.64980 2.97273 3.00086 3.47403 3.65839 3.88538 3.94121 3.99215 4.10714 4.24497 4.30346 4.36559 4.40688 4.43708 4.48554 4.60595 4.64897 4.71798 4.73217 4.78687 4.79767 4.94480 5.01767 5.02983 5.05747 5.16631 5.21562 5.25403 5.28268 5.30161 5.53743 5.68105 5.81039 5.88044 5.98320 6.13677 6.30683 6.50858 6.72367 6.82793 8.21469 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012342 B = 0.004407 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.107784 B = 6352.383623 C = 7848.405691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.985 5.985 3 C 0.120 3.880 4 C 0.045 3.955 5 O -0.390 6.390 6 C 0.084 3.916 7 C -0.167 4.167 8 C -0.184 4.184 9 C -0.158 4.158 10 S 2.716 3.284 11 O -1.008 7.008 12 O -0.996 6.996 13 C -0.793 4.793 14 C -0.021 4.021 15 C -0.247 4.247 16 C -0.077 4.077 17 C -0.181 4.181 18 C 0.170 3.830 19 C -0.503 4.503 20 H 0.109 0.891 21 C 0.054 3.946 22 N -0.804 5.804 23 Si 0.951 3.049 24 H -0.239 1.239 25 H -0.264 1.264 26 H -0.257 1.257 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.111 0.889 45 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.918 8.009 -9.204 13.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.823 5.823 3 C -0.005 4.005 4 C -0.034 4.034 5 O -0.310 6.310 6 C 0.008 3.992 7 C -0.185 4.185 8 C -0.221 4.221 9 C -0.195 4.195 10 S 2.813 3.187 11 O -0.999 6.999 12 O -0.986 6.986 13 C -0.887 4.887 14 C -0.041 4.041 15 C -0.267 4.267 16 C -0.096 4.096 17 C -0.201 4.201 18 C 0.166 3.834 19 C -0.531 4.531 20 H 0.127 0.873 21 C -0.165 4.165 22 N -0.428 5.428 23 Si 0.771 3.229 24 H -0.163 1.163 25 H -0.188 1.188 26 H -0.181 1.181 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.125 0.875 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.138 0.862 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.129 0.871 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.819 7.743 -9.638 13.269 hybrid contribution 0.516 0.264 0.978 1.136 sum -4.303 8.007 -8.660 12.555 Atomic orbital electron populations 1.21387 0.77561 1.02656 1.02004 1.56965 1.15533 1.20196 1.89588 1.21692 0.98607 0.84842 0.95399 1.23099 0.85017 0.99688 0.95577 1.87891 1.28015 1.84521 1.30541 1.22156 0.95834 0.97701 0.83517 1.22124 0.96400 1.06702 0.93281 1.23140 1.02127 0.95045 1.01776 1.23056 1.04011 0.95423 0.97000 1.00594 0.72169 0.71945 0.74004 1.93410 1.71240 1.63420 1.71819 1.93416 1.36622 1.84298 1.84307 1.30284 1.21727 1.12717 1.23934 1.20591 0.93558 0.93061 0.96860 1.20919 1.09179 1.03377 0.93194 1.21269 0.95128 0.94381 0.98772 1.21526 1.04268 0.96789 0.97506 1.17333 0.85206 0.89830 0.91058 1.20516 1.30991 0.98579 1.02975 0.87307 1.26604 0.94666 1.02061 0.93147 1.69802 1.31649 1.33070 1.08289 0.85635 0.79603 0.77840 0.79863 1.16257 1.18840 1.18097 0.91922 0.92555 0.90047 0.87884 0.89332 0.93950 0.89968 0.93571 0.91808 0.87490 0.88957 0.88045 0.87161 0.87862 0.86199 0.85372 0.85815 0.87082 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.67 9.56 127.77 1.22 4.89 16 2 N -0.99 -38.22 3.15 -539.14 -1.70 -39.92 16 3 C 0.12 4.25 5.29 86.38 0.46 4.70 16 4 C 0.04 1.33 6.28 71.98 0.45 1.79 16 5 O -0.39 -11.23 9.36 -148.98 -1.40 -12.63 16 6 C 0.08 1.91 6.22 71.98 0.45 2.36 16 7 C -0.17 -3.32 6.06 -10.79 -0.07 -3.39 16 8 C -0.18 -3.24 10.18 30.60 0.31 -2.93 16 9 C -0.16 -2.32 10.25 30.60 0.31 -2.01 16 10 S 2.72 123.37 5.00 -56.49 -0.28 123.09 16 11 O -1.01 -47.52 16.36 -128.00 -2.09 -49.61 16 12 O -1.00 -48.55 14.56 -128.00 -1.86 -50.41 16 13 C -0.79 -38.76 5.96 22.73 0.14 -38.62 16 14 C -0.02 -0.96 9.53 22.22 0.21 -0.75 16 15 C -0.25 -10.51 10.05 22.46 0.23 -10.28 16 16 C -0.08 -3.38 10.02 22.22 0.22 -3.16 16 17 C -0.18 -8.99 8.63 22.73 0.20 -8.80 16 18 C 0.17 8.73 5.50 -21.29 -0.12 8.61 16 19 C -0.50 -24.72 6.43 23.46 0.15 -24.57 16 20 H 0.11 5.38 4.06 -2.91 -0.01 5.37 16 21 C 0.05 2.44 5.25 85.26 0.45 2.89 16 22 N -0.80 -37.41 11.09 21.83 0.24 -37.17 16 23 Si 0.95 33.84 29.57 68.60 2.03 35.87 16 24 H -0.24 -7.67 7.11 99.48 0.71 -6.96 16 25 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 26 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 27 H 0.06 1.97 7.98 -2.39 -0.02 1.96 16 28 H 0.06 1.90 8.00 -2.39 -0.02 1.89 16 29 H 0.08 2.44 7.97 -2.39 -0.02 2.42 16 30 H 0.10 3.99 4.42 -2.39 -0.01 3.98 16 31 H 0.09 2.94 8.01 -2.39 -0.02 2.92 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 1.04 7.88 -2.39 -0.02 1.03 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.09 1.66 8.03 -2.39 -0.02 1.64 16 38 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.12 5.06 7.32 -2.91 -0.02 5.04 16 42 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 43 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 44 H 0.11 5.60 6.52 -2.91 -0.02 5.58 16 45 H 0.29 12.32 8.30 -92.71 -0.77 11.55 16 Total: -1.00 -61.04 377.24 0.54 -60.51 By element: Atomic # 1 Polarization: 38.55 SS G_CDS: 0.99 Total: 39.54 kcal Atomic # 6 Polarization: -73.87 SS G_CDS: 4.61 Total: -69.26 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -1.46 Total: -77.08 kcal Atomic # 8 Polarization: -107.30 SS G_CDS: -5.35 Total: -112.65 kcal Atomic # 14 Polarization: 33.84 SS G_CDS: 2.03 Total: 35.87 kcal Atomic # 16 Polarization: 123.37 SS G_CDS: -0.28 Total: 123.09 kcal Total: -61.04 0.54 -60.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601370007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.041 kcal (2) G-P(sol) polarization free energy of solvation -61.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds