Wall clock time and date at job start Tue Mar 31 2020 23:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46505 * 120.00024 * 2 1 4 4 C 1.52996 * 109.47499 * 275.00561 * 3 2 1 5 5 H 1.08994 * 110.43553 * 54.29656 * 4 3 2 6 6 C 1.54268 * 110.48206 * 291.75865 * 4 3 2 7 7 C 1.53881 * 106.59589 * 217.71405 * 6 4 3 8 8 C 1.54265 * 106.59574 * 359.97438 * 7 6 4 9 9 C 1.54889 * 110.48582 * 176.84189 * 4 3 2 10 10 H 1.08999 * 110.75601 * 38.30514 * 9 4 3 11 11 O 1.42902 * 110.75452 * 274.93006 * 9 4 3 12 12 S 1.65596 * 120.00142 * 180.02562 * 2 1 3 13 13 O 1.42103 * 106.39819 * 340.24519 * 12 2 1 14 14 O 1.42101 * 106.40469 * 207.32609 * 12 2 1 15 15 C 1.76203 * 107.22034 * 93.78241 * 12 2 1 16 16 C 1.37638 * 120.12582 * 114.78414 * 15 12 2 17 17 C 1.38607 * 120.24854 * 180.30029 * 16 15 12 18 18 C 1.38655 * 120.50214 * 359.44625 * 17 16 15 19 19 C 1.37599 * 120.24688 * 0.27617 * 18 17 16 20 20 C 1.40693 * 120.12818 * 294.53548 * 15 12 2 21 21 C 1.41395 * 120.24742 * 359.95240 * 20 15 12 22 22 H 1.08003 * 119.99859 * 323.21343 * 21 20 15 23 23 C 1.39942 * 120.00179 * 143.21891 * 21 20 15 24 24 N 1.30817 * 120.00123 * 1.58028 * 23 21 20 25 25 Si 1.86807 * 119.99857 * 181.59006 * 23 21 20 26 26 H 1.48503 * 109.46968 * 89.99685 * 25 23 21 27 27 H 1.48496 * 109.46956 * 209.99392 * 25 23 21 28 28 H 1.48490 * 109.47002 * 329.99476 * 25 23 21 29 29 H 1.08995 * 109.47268 * 275.30706 * 1 2 3 30 30 H 1.09006 * 109.47199 * 35.30480 * 1 2 3 31 31 H 1.08997 * 109.47196 * 155.30049 * 1 2 3 32 32 H 1.09003 * 109.46700 * 35.00868 * 3 2 1 33 33 H 1.08998 * 109.47036 * 154.99694 * 3 2 1 34 34 H 1.08998 * 110.03384 * 336.99138 * 6 4 3 35 35 H 1.08994 * 110.03621 * 98.38000 * 6 4 3 36 36 H 1.08997 * 110.03294 * 119.28350 * 7 6 4 37 37 H 1.09000 * 110.03166 * 240.71763 * 7 6 4 38 38 H 1.09002 * 110.48395 * 142.29287 * 8 7 6 39 39 H 1.09000 * 110.49025 * 264.79653 * 8 7 6 40 40 H 0.96698 * 113.99900 * 180.02562 * 11 9 4 41 41 H 1.07999 * 119.87906 * 0.02562 * 16 15 12 42 42 H 1.08002 * 119.75289 * 179.71673 * 17 16 15 43 43 H 1.07999 * 119.88085 * 180.25308 * 18 17 16 44 44 H 1.07998 * 120.12897 * 179.97438 * 19 18 17 45 45 H 0.97002 * 120.00625 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3436 1.7734 -1.4369 5 1 1.3684 1.8341 -1.9199 6 6 3.2870 0.8534 -2.2389 7 6 4.1128 1.7672 -3.1614 8 6 3.6417 3.2106 -2.8881 9 6 3.0458 3.1538 -1.4579 10 1 3.8364 3.1965 -0.7088 11 8 2.0999 4.2063 -1.2586 12 16 2.2930 -1.4341 -0.0006 13 8 1.3825 -2.4232 0.4597 14 8 3.5425 -1.1764 0.6252 15 6 2.6500 -1.8296 -1.6802 16 6 3.9538 -1.8631 -2.1199 17 6 4.2372 -2.1678 -3.4420 18 6 3.2141 -2.4532 -4.3333 19 6 1.9036 -2.4311 -3.9145 20 6 1.6037 -2.1174 -2.5757 21 6 0.2608 -2.0921 -2.1338 22 1 0.0120 -2.4398 -1.1420 23 6 -0.7459 -1.6165 -2.9816 24 7 -0.4492 -1.2243 -4.1937 25 14 -2.5136 -1.5415 -2.3821 26 1 -2.7663 -0.2217 -1.7500 27 1 -3.4346 -1.7238 -3.5326 28 1 -2.7450 -2.6193 -1.3872 29 1 -0.3633 0.0950 1.0232 30 1 -0.3634 0.8387 -0.5939 31 1 -0.3633 -0.9336 -0.4294 32 1 1.6502 2.0042 0.5896 33 1 3.1858 1.1177 0.4344 34 1 3.9472 0.3130 -1.5606 35 1 2.7053 0.1490 -2.8334 36 1 5.1736 1.6703 -2.9307 37 1 3.9316 1.5069 -4.2043 38 1 4.4852 3.9001 -2.9232 39 1 2.8788 3.5058 -3.6085 40 1 2.4894 5.0913 -1.2636 41 1 4.7589 -1.6469 -1.4333 42 1 5.2629 -2.1874 -3.7796 43 1 3.4466 -2.6933 -5.3603 44 1 1.1082 -2.6532 -4.6104 45 1 -1.1470 -0.8950 -4.7816 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601377247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:50 Heat of formation + Delta-G solvation = -106.331489 kcal Electronic energy + Delta-G solvation = -30389.244301 eV Core-core repulsion = 26498.183756 eV Total energy + Delta-G solvation = -3891.060545 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -38.91646 -37.69522 -36.39004 -35.78586 -34.89778 -34.52538 -33.79309 -30.28274 -29.90206 -29.58501 -27.16877 -26.12236 -25.30771 -23.32354 -21.65766 -21.20255 -20.45651 -19.42796 -18.17945 -17.69010 -17.28450 -16.92586 -16.04781 -15.45737 -15.30008 -15.09326 -14.65284 -14.37878 -14.02221 -13.55568 -13.34625 -13.31010 -13.02625 -12.92319 -12.72862 -12.30838 -12.16206 -11.96614 -11.83937 -11.55778 -11.35197 -11.28168 -11.23064 -11.16092 -10.99226 -10.90881 -10.64580 -10.49133 -10.44663 -10.34763 -10.04825 -9.90857 -9.83495 -9.73785 -9.48731 -9.17259 -8.30405 -7.95294 -7.49655 -6.97554 -4.80017 1.50863 2.30136 2.71029 2.96215 3.02713 3.05413 3.76850 3.83704 4.34675 4.41050 4.71778 4.85184 4.90110 5.12002 5.23967 5.33781 5.52240 5.54537 5.66905 5.79295 5.84150 5.88941 5.96188 6.00447 6.09289 6.12436 6.19931 6.21828 6.28715 6.36005 6.44102 6.50122 6.59869 6.68539 6.79527 6.85446 6.96879 7.02731 7.05391 7.28987 7.33235 7.48496 7.71874 7.75697 7.77346 7.92782 8.33777 8.54120 8.63160 9.94656 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009720 B = 0.006780 C = 0.006308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.060528 B = 4128.512805 C = 4437.602046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.990 5.990 3 C 0.129 3.871 4 C -0.101 4.101 5 H 0.089 0.911 6 C -0.133 4.133 7 C -0.116 4.116 8 C -0.153 4.153 9 C 0.101 3.899 10 H 0.064 0.936 11 O -0.562 6.562 12 S 2.702 3.298 13 O -0.974 6.974 14 O -0.997 6.997 15 C -0.764 4.764 16 C -0.002 4.002 17 C -0.238 4.238 18 C -0.078 4.078 19 C -0.150 4.150 20 C 0.197 3.803 21 C -0.488 4.488 22 H 0.116 0.884 23 C 0.083 3.917 24 N -0.788 5.788 25 Si 0.897 3.103 26 H -0.259 1.259 27 H -0.274 1.274 28 H -0.252 1.252 29 H 0.040 0.960 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.371 0.629 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.126 0.874 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.072 8.408 1.357 9.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.825 5.825 3 C 0.003 3.997 4 C -0.121 4.121 5 H 0.107 0.893 6 C -0.170 4.170 7 C -0.154 4.154 8 C -0.191 4.191 9 C 0.041 3.959 10 H 0.082 0.918 11 O -0.367 6.367 12 S 2.800 3.200 13 O -0.965 6.965 14 O -0.988 6.988 15 C -0.859 4.859 16 C -0.022 4.022 17 C -0.258 4.258 18 C -0.097 4.097 19 C -0.170 4.170 20 C 0.193 3.807 21 C -0.517 4.517 22 H 0.133 0.867 23 C -0.137 4.137 24 N -0.412 5.412 25 Si 0.720 3.280 26 H -0.184 1.184 27 H -0.199 1.199 28 H -0.175 1.175 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.217 0.783 41 H 0.125 0.875 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.144 0.856 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.719 7.526 1.979 8.243 hybrid contribution -0.331 0.804 -1.030 1.348 sum 2.388 8.330 0.949 8.717 Atomic orbital electron populations 1.21882 0.78647 1.05339 1.00323 1.57197 1.14902 1.20562 1.89871 1.21310 0.97027 0.85629 0.95706 1.22420 1.00686 0.91931 0.97045 0.89275 1.22790 0.97711 0.97958 0.98560 1.21963 0.99378 0.93592 1.00458 1.23033 1.00346 0.97946 0.97806 1.22920 0.90382 0.87493 0.95098 0.91844 1.86548 1.37347 1.17228 1.95583 1.01114 0.71915 0.72100 0.74907 1.93471 1.64456 1.57267 1.81279 1.93426 1.43857 1.85412 1.76056 1.29986 1.00424 1.31359 1.24129 1.20180 0.93821 0.92973 0.95194 1.20483 0.97226 1.13927 0.94189 1.20938 0.93916 0.97575 0.97297 1.21609 0.94817 1.03082 0.97451 1.16980 0.90846 0.82198 0.90674 1.20389 0.91323 1.37113 1.02915 0.86692 1.25896 1.01271 0.92544 0.93956 1.69734 1.35806 1.29519 1.06165 0.86457 0.80755 0.80742 0.80010 1.18351 1.19912 1.17517 0.94130 0.92067 0.87993 0.90517 0.89694 0.91313 0.88085 0.92236 0.91783 0.92165 0.91021 0.78285 0.87546 0.88813 0.88945 0.85617 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.53 9.88 59.85 0.59 2.12 16 2 N -0.99 -18.95 3.06 -121.76 -0.37 -19.33 16 3 C 0.13 2.15 5.04 -4.04 -0.02 2.13 16 4 C -0.10 -1.67 2.82 -88.96 -0.25 -1.92 16 5 H 0.09 1.66 8.13 -51.93 -0.42 1.24 16 6 C -0.13 -2.35 3.74 -25.61 -0.10 -2.45 16 7 C -0.12 -1.74 6.80 -25.61 -0.17 -1.92 16 8 C -0.15 -1.99 6.56 -24.99 -0.16 -2.15 16 9 C 0.10 1.36 3.71 -24.65 -0.09 1.27 16 10 H 0.06 0.77 8.06 -51.93 -0.42 0.36 16 11 O -0.56 -7.27 13.45 -35.23 -0.47 -7.74 16 12 S 2.70 59.35 4.57 -107.50 -0.49 58.86 16 13 O -0.97 -23.70 14.74 -57.17 -0.84 -24.54 16 14 O -1.00 -22.34 15.43 -57.17 -0.88 -23.22 16 15 C -0.76 -17.24 3.51 -38.87 -0.14 -17.38 16 16 C 0.00 -0.04 6.38 -39.66 -0.25 -0.29 16 17 C -0.24 -4.82 10.01 -39.29 -0.39 -5.21 16 18 C -0.08 -1.65 10.02 -39.66 -0.40 -2.05 16 19 C -0.15 -3.51 8.64 -38.87 -0.34 -3.84 16 20 C 0.20 4.73 4.76 -106.83 -0.51 4.22 16 21 C -0.49 -11.68 6.02 -37.74 -0.23 -11.91 16 22 H 0.12 2.82 4.39 -52.48 -0.23 2.59 16 23 C 0.08 1.87 5.36 -17.35 -0.09 1.78 16 24 N -0.79 -18.10 10.84 55.55 0.60 -17.49 16 25 Si 0.90 17.31 28.41 -169.99 -4.83 12.48 16 26 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 27 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 28 H -0.25 -4.91 7.11 56.52 0.40 -4.50 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 31 H 0.10 2.07 2.67 -51.93 -0.14 1.93 16 32 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16 33 H 0.08 1.39 6.83 -51.93 -0.35 1.03 16 34 H 0.07 1.25 5.03 -51.93 -0.26 0.99 16 35 H 0.10 2.12 5.51 -51.93 -0.29 1.83 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.37 3.02 9.12 45.56 0.42 3.43 16 41 H 0.11 2.11 7.13 -52.49 -0.37 1.74 16 42 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.13 3.04 6.42 -52.49 -0.34 2.70 16 45 H 0.28 6.03 8.30 -40.82 -0.34 5.69 16 LS Contribution 349.69 15.07 5.27 5.27 Total: -1.00 -27.65 349.69 -9.91 -37.56 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -5.34 Total: 15.74 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: -2.55 Total: -37.59 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.23 Total: -36.82 kcal Atomic # 8 Polarization: -53.30 SS G_CDS: -2.20 Total: -55.50 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -4.83 Total: 12.48 kcal Atomic # 16 Polarization: 59.35 SS G_CDS: -0.49 Total: 58.86 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.65 -9.91 -37.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601377247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.768 kcal (2) G-P(sol) polarization free energy of solvation -27.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds