Wall clock time and date at job start Tue Mar 31 2020 23:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46505 * 120.00024 * 2 1 4 4 C 1.52996 * 109.47499 * 275.00561 * 3 2 1 5 5 H 1.08994 * 110.43553 * 54.29656 * 4 3 2 6 6 C 1.54268 * 110.48206 * 291.75865 * 4 3 2 7 7 C 1.53881 * 106.59589 * 217.71405 * 6 4 3 8 8 C 1.54265 * 106.59574 * 359.97438 * 7 6 4 9 9 C 1.54889 * 110.48582 * 176.84189 * 4 3 2 10 10 H 1.08999 * 110.75601 * 38.30514 * 9 4 3 11 11 O 1.42902 * 110.75452 * 274.93006 * 9 4 3 12 12 S 1.65596 * 120.00142 * 180.02562 * 2 1 3 13 13 O 1.42103 * 106.39819 * 340.24519 * 12 2 1 14 14 O 1.42101 * 106.40469 * 207.32609 * 12 2 1 15 15 C 1.76203 * 107.22034 * 93.78241 * 12 2 1 16 16 C 1.37638 * 120.12582 * 114.78414 * 15 12 2 17 17 C 1.38607 * 120.24854 * 180.30029 * 16 15 12 18 18 C 1.38655 * 120.50214 * 359.44625 * 17 16 15 19 19 C 1.37599 * 120.24688 * 0.27617 * 18 17 16 20 20 C 1.40693 * 120.12818 * 294.53548 * 15 12 2 21 21 C 1.41395 * 120.24742 * 359.95240 * 20 15 12 22 22 H 1.08003 * 119.99859 * 323.21343 * 21 20 15 23 23 C 1.39942 * 120.00179 * 143.21891 * 21 20 15 24 24 N 1.30817 * 120.00123 * 1.58028 * 23 21 20 25 25 Si 1.86807 * 119.99857 * 181.59006 * 23 21 20 26 26 H 1.48503 * 109.46968 * 89.99685 * 25 23 21 27 27 H 1.48496 * 109.46956 * 209.99392 * 25 23 21 28 28 H 1.48490 * 109.47002 * 329.99476 * 25 23 21 29 29 H 1.08995 * 109.47268 * 275.30706 * 1 2 3 30 30 H 1.09006 * 109.47199 * 35.30480 * 1 2 3 31 31 H 1.08997 * 109.47196 * 155.30049 * 1 2 3 32 32 H 1.09003 * 109.46700 * 35.00868 * 3 2 1 33 33 H 1.08998 * 109.47036 * 154.99694 * 3 2 1 34 34 H 1.08998 * 110.03384 * 336.99138 * 6 4 3 35 35 H 1.08994 * 110.03621 * 98.38000 * 6 4 3 36 36 H 1.08997 * 110.03294 * 119.28350 * 7 6 4 37 37 H 1.09000 * 110.03166 * 240.71763 * 7 6 4 38 38 H 1.09002 * 110.48395 * 142.29287 * 8 7 6 39 39 H 1.09000 * 110.49025 * 264.79653 * 8 7 6 40 40 H 0.96698 * 113.99900 * 180.02562 * 11 9 4 41 41 H 1.07999 * 119.87906 * 0.02562 * 16 15 12 42 42 H 1.08002 * 119.75289 * 179.71673 * 17 16 15 43 43 H 1.07999 * 119.88085 * 180.25308 * 18 17 16 44 44 H 1.07998 * 120.12897 * 179.97438 * 19 18 17 45 45 H 0.97002 * 120.00625 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3436 1.7734 -1.4369 5 1 1.3684 1.8341 -1.9199 6 6 3.2870 0.8534 -2.2389 7 6 4.1128 1.7672 -3.1614 8 6 3.6417 3.2106 -2.8881 9 6 3.0458 3.1538 -1.4579 10 1 3.8364 3.1965 -0.7088 11 8 2.0999 4.2063 -1.2586 12 16 2.2930 -1.4341 -0.0006 13 8 1.3825 -2.4232 0.4597 14 8 3.5425 -1.1764 0.6252 15 6 2.6500 -1.8296 -1.6802 16 6 3.9538 -1.8631 -2.1199 17 6 4.2372 -2.1678 -3.4420 18 6 3.2141 -2.4532 -4.3333 19 6 1.9036 -2.4311 -3.9145 20 6 1.6037 -2.1174 -2.5757 21 6 0.2608 -2.0921 -2.1338 22 1 0.0120 -2.4398 -1.1420 23 6 -0.7459 -1.6165 -2.9816 24 7 -0.4492 -1.2243 -4.1937 25 14 -2.5136 -1.5415 -2.3821 26 1 -2.7663 -0.2217 -1.7500 27 1 -3.4346 -1.7238 -3.5326 28 1 -2.7450 -2.6193 -1.3872 29 1 -0.3633 0.0950 1.0232 30 1 -0.3634 0.8387 -0.5939 31 1 -0.3633 -0.9336 -0.4294 32 1 1.6502 2.0042 0.5896 33 1 3.1858 1.1177 0.4344 34 1 3.9472 0.3130 -1.5606 35 1 2.7053 0.1490 -2.8334 36 1 5.1736 1.6703 -2.9307 37 1 3.9316 1.5069 -4.2043 38 1 4.4852 3.9001 -2.9232 39 1 2.8788 3.5058 -3.6085 40 1 2.4894 5.0913 -1.2636 41 1 4.7589 -1.6469 -1.4333 42 1 5.2629 -2.1874 -3.7796 43 1 3.4466 -2.6933 -5.3603 44 1 1.1082 -2.6532 -4.6104 45 1 -1.1470 -0.8950 -4.7816 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601377247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:50 Heat of formation + Delta-G solvation = -125.002088 kcal Electronic energy + Delta-G solvation = -30390.053919 eV Core-core repulsion = 26498.183756 eV Total energy + Delta-G solvation = -3891.870163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.18165 -39.31532 -38.15316 -37.10446 -36.68529 -35.83451 -35.39632 -31.99790 -31.46051 -31.03152 -28.36107 -27.65977 -26.90347 -24.71221 -23.35432 -22.91302 -21.55960 -20.74067 -19.81506 -19.39889 -18.74889 -18.21067 -17.71300 -17.12999 -16.90162 -16.32723 -16.02535 -15.86310 -15.56599 -15.01548 -14.91366 -14.71223 -14.47540 -14.43098 -14.22518 -13.81630 -13.69575 -13.41589 -13.19191 -13.04738 -12.95988 -12.90978 -12.88891 -12.72848 -12.57240 -12.50268 -12.15318 -12.01653 -11.82844 -11.63936 -11.59691 -11.28384 -11.20011 -11.17021 -10.90093 -10.76197 -9.80681 -9.62782 -9.22724 -8.67454 -6.57736 -0.18042 0.57770 1.03750 1.37411 1.46373 1.48703 2.17098 2.24441 2.69945 3.00261 3.35010 3.47910 3.68076 3.71304 3.72310 3.96106 4.21903 4.33844 4.37303 4.43297 4.52496 4.55044 4.57834 4.69185 4.73056 4.76543 4.78158 4.90276 4.92973 5.04046 5.08548 5.10080 5.22098 5.26048 5.30819 5.33576 5.39415 5.48873 5.59646 5.62982 5.74654 5.85641 5.96780 6.05371 6.19122 6.56984 6.79256 6.88902 7.01240 8.26540 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009720 B = 0.006780 C = 0.006308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.060528 B = 4128.512805 C = 4437.602046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.988 5.988 3 C 0.125 3.875 4 C -0.102 4.102 5 H 0.061 0.939 6 C -0.131 4.131 7 C -0.116 4.116 8 C -0.145 4.145 9 C 0.110 3.890 10 H 0.086 0.914 11 O -0.577 6.577 12 S 2.709 3.291 13 O -1.003 7.003 14 O -1.004 7.004 15 C -0.769 4.769 16 C -0.007 4.007 17 C -0.233 4.233 18 C -0.076 4.076 19 C -0.176 4.176 20 C 0.178 3.822 21 C -0.509 4.509 22 H 0.103 0.897 23 C 0.057 3.943 24 N -0.811 5.811 25 Si 0.941 3.059 26 H -0.243 1.243 27 H -0.267 1.267 28 H -0.258 1.258 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.394 0.606 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.139 10.469 1.737 11.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.824 5.824 3 C 0.000 4.000 4 C -0.122 4.122 5 H 0.080 0.920 6 C -0.169 4.169 7 C -0.153 4.153 8 C -0.183 4.183 9 C 0.051 3.949 10 H 0.104 0.896 11 O -0.385 6.385 12 S 2.807 3.193 13 O -0.994 6.994 14 O -0.994 6.994 15 C -0.864 4.864 16 C -0.026 4.026 17 C -0.253 4.253 18 C -0.094 4.094 19 C -0.196 4.196 20 C 0.173 3.827 21 C -0.538 4.538 22 H 0.120 0.880 23 C -0.160 4.160 24 N -0.436 5.436 25 Si 0.762 3.238 26 H -0.166 1.166 27 H -0.191 1.191 28 H -0.182 1.182 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.244 0.756 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.135 0.865 44 H 0.128 0.872 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.806 9.606 2.351 10.597 hybrid contribution -0.576 0.180 -1.167 1.314 sum 3.230 9.786 1.184 10.373 Atomic orbital electron populations 1.21960 0.78230 1.04685 1.01899 1.57008 1.15203 1.20543 1.89666 1.21546 0.97338 0.84809 0.96267 1.22342 0.99379 0.94138 0.96354 0.92039 1.22629 0.97644 0.98018 0.98559 1.21960 0.99923 0.94452 0.99010 1.22986 1.01118 0.97025 0.97169 1.22775 0.90199 0.85960 0.95970 0.89637 1.86492 1.37856 1.18566 1.95552 1.00733 0.71610 0.72375 0.74577 1.93428 1.65173 1.59006 1.81792 1.93402 1.44194 1.85668 1.76163 1.30125 1.00847 1.31229 1.24157 1.20419 0.93605 0.92630 0.95991 1.20815 0.98523 1.12300 0.93625 1.21224 0.93191 0.96305 0.98697 1.21577 0.95596 1.05061 0.97364 1.17194 0.91424 0.82750 0.91289 1.20383 0.92059 1.38535 1.02782 0.87967 1.26437 1.03920 0.91822 0.93859 1.69780 1.36859 1.30045 1.06878 0.85799 0.77107 0.81224 0.79698 1.16609 1.19135 1.18174 0.91613 0.91224 0.89908 0.88263 0.89168 0.92068 0.91864 0.90548 0.93073 0.88937 0.92098 0.75611 0.86272 0.85678 0.86498 0.87185 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.81 9.88 127.77 1.26 4.07 16 2 N -0.99 -37.49 3.06 -539.12 -1.65 -39.14 16 3 C 0.13 3.99 5.04 86.38 0.44 4.43 16 4 C -0.10 -3.27 2.82 -9.72 -0.03 -3.30 16 5 H 0.06 2.31 8.13 -2.39 -0.02 2.29 16 6 C -0.13 -4.57 3.74 31.32 0.12 -4.45 16 7 C -0.12 -3.28 6.80 31.32 0.21 -3.07 16 8 C -0.15 -3.36 6.56 31.72 0.21 -3.16 16 9 C 0.11 2.67 3.71 31.94 0.12 2.79 16 10 H 0.09 1.73 8.06 -2.39 -0.02 1.71 16 11 O -0.58 -13.16 13.45 -148.98 -2.00 -15.16 16 12 S 2.71 119.96 4.57 -56.49 -0.26 119.70 16 13 O -1.00 -49.97 14.74 -128.00 -1.89 -51.85 16 14 O -1.00 -44.48 15.43 -128.00 -1.97 -46.46 16 15 C -0.77 -35.24 3.51 22.73 0.08 -35.16 16 16 C -0.01 -0.28 6.38 22.22 0.14 -0.14 16 17 C -0.23 -9.13 10.01 22.46 0.22 -8.90 16 18 C -0.08 -3.16 10.02 22.22 0.22 -2.94 16 19 C -0.18 -8.48 8.64 22.73 0.20 -8.28 16 20 C 0.18 8.79 4.76 -21.29 -0.10 8.69 16 21 C -0.51 -25.24 6.02 23.46 0.14 -25.10 16 22 H 0.10 5.25 4.39 -2.91 -0.01 5.24 16 23 C 0.06 2.65 5.36 85.26 0.46 3.10 16 24 N -0.81 -38.41 10.84 21.82 0.24 -38.18 16 25 Si 0.94 35.74 28.41 68.60 1.95 37.69 16 26 H -0.24 -8.48 7.11 99.48 0.71 -7.77 16 27 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 28 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 29 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.07 2.37 8.10 -2.38 -0.02 2.35 16 31 H 0.08 3.41 2.67 -2.39 -0.01 3.40 16 32 H 0.10 2.71 8.11 -2.39 -0.02 2.69 16 33 H 0.09 2.78 6.83 -2.39 -0.02 2.76 16 34 H 0.06 2.18 5.03 -2.39 -0.01 2.17 16 35 H 0.06 2.70 5.51 -2.39 -0.01 2.69 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.39 4.94 9.12 -74.06 -0.68 4.26 16 41 H 0.12 4.60 7.13 -2.91 -0.02 4.58 16 42 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 43 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 44 H 0.11 5.56 6.42 -2.91 -0.02 5.54 16 45 H 0.29 12.58 8.30 -92.71 -0.77 11.81 16 Total: -1.00 -61.03 349.69 -1.54 -62.57 By element: Atomic # 1 Polarization: 41.89 SS G_CDS: 0.35 Total: 42.24 kcal Atomic # 6 Polarization: -75.10 SS G_CDS: 3.69 Total: -71.41 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -1.41 Total: -77.31 kcal Atomic # 8 Polarization: -107.61 SS G_CDS: -5.87 Total: -113.47 kcal Atomic # 14 Polarization: 35.74 SS G_CDS: 1.95 Total: 37.69 kcal Atomic # 16 Polarization: 119.96 SS G_CDS: -0.26 Total: 119.70 kcal Total: -61.03 -1.54 -62.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601377247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.430 kcal (2) G-P(sol) polarization free energy of solvation -61.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds