Wall clock time and date at job start Tue Mar 31 2020 22:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47759 * 2 1 4 4 N 1.46507 * 109.47166 * 239.99659 * 2 1 3 5 5 S 1.65592 * 119.99797 * 97.65302 * 4 2 1 6 6 O 1.42108 * 106.40119 * 177.21018 * 5 4 2 7 7 O 1.42097 * 106.40747 * 310.12959 * 5 4 2 8 8 C 1.76205 * 107.21884 * 63.67340 * 5 4 2 9 9 C 1.37634 * 120.12382 * 246.72178 * 8 5 4 10 10 C 1.38615 * 120.24653 * 179.70199 * 9 8 5 11 11 C 1.38658 * 120.50097 * 0.59079 * 10 9 8 12 12 C 1.37597 * 120.24620 * 359.68592 * 11 10 9 13 13 C 1.40697 * 120.12691 * 66.99166 * 8 5 4 14 14 C 1.41390 * 120.24452 * 0.02588 * 13 8 5 15 15 H 1.08003 * 120.00526 * 334.13143 * 14 13 8 16 16 C 1.39952 * 119.99719 * 154.13880 * 14 13 8 17 17 N 1.30822 * 119.99915 * 343.08984 * 16 14 13 18 18 Si 1.86795 * 119.99812 * 163.10026 * 16 14 13 19 19 H 1.48502 * 109.47721 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47434 * 119.99555 * 18 16 14 21 21 H 1.48498 * 109.46894 * 239.99557 * 18 16 14 22 22 C 1.53005 * 109.47126 * 120.00082 * 2 1 3 23 23 H 1.09001 * 109.48076 * 175.02138 * 22 2 1 24 24 C 1.53089 * 109.47764 * 295.05503 * 22 2 1 25 25 C 1.53185 * 109.16476 * 177.59302 * 24 22 2 26 26 C 1.53175 * 109.03183 * 303.01803 * 25 24 22 27 27 C 1.53093 * 109.16556 * 56.98306 * 26 25 24 28 28 O 1.42904 * 109.48272 * 54.99717 * 22 2 1 29 29 H 1.08999 * 109.47030 * 59.99819 * 1 2 3 30 30 H 1.08996 * 109.47121 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46596 * 300.00302 * 1 2 3 32 32 H 0.97003 * 119.99820 * 277.66204 * 4 2 1 33 33 H 1.08003 * 119.87927 * 359.97438 * 9 8 5 34 34 H 1.08003 * 119.75432 * 180.29993 * 10 9 8 35 35 H 1.08001 * 119.88069 * 179.70738 * 11 10 9 36 36 H 1.08001 * 120.13217 * 180.02562 * 12 11 10 37 37 H 0.96999 * 119.99713 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.52829 * 57.68255 * 24 22 2 39 39 H 1.09001 * 109.52483 * 297.49461 * 24 22 2 40 40 H 1.08997 * 109.54635 * 183.15102 * 25 24 22 41 41 H 1.08998 * 109.53930 * 62.88171 * 25 24 22 42 42 H 1.08999 * 109.51886 * 176.88374 * 26 25 24 43 43 H 1.08997 * 109.52553 * 297.07206 * 26 25 24 44 44 H 1.08999 * 109.48468 * 62.36729 * 27 26 25 45 45 H 1.09001 * 109.48138 * 182.40662 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 16 2.4744 0.1817 -2.5277 6 8 2.9545 -0.7590 -3.4786 7 8 1.4126 1.0866 -2.7977 8 6 3.8590 1.1650 -2.0579 9 6 3.7482 2.5361 -2.0107 10 6 4.8340 3.3118 -1.6356 11 6 6.0458 2.7186 -1.3157 12 6 6.1809 1.3500 -1.3615 13 6 5.0836 0.5520 -1.7351 14 6 5.2108 -0.8552 -1.7862 15 1 4.3404 -1.4813 -1.6562 16 6 6.4647 -1.4369 -2.0050 17 7 7.4453 -0.7162 -2.4850 18 14 6.7381 -3.2425 -1.6119 19 1 5.4805 -3.8303 -1.0843 20 1 7.1415 -3.9624 -2.8464 21 1 7.8097 -3.3702 -0.5918 22 6 2.0400 -0.7213 1.2493 23 1 3.1264 -0.7993 1.2060 24 6 1.6339 0.0685 2.4962 25 6 2.0954 -0.6902 3.7444 26 6 1.4912 -2.0976 3.7254 27 6 1.9028 -2.8038 2.4309 28 8 1.4703 -2.0305 1.3097 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.0744 -1.6590 -1.2082 33 1 2.8106 3.0092 -2.2627 34 1 4.7369 4.3868 -1.5965 35 1 6.8866 3.3329 -1.0293 36 1 7.1255 0.8898 -1.1116 37 1 8.3143 -1.1195 -2.6370 38 1 0.5500 0.1818 2.5188 39 1 2.1034 1.0519 2.4735 40 1 1.7606 -0.1617 4.6370 41 1 3.1831 -0.7603 3.7470 42 1 1.8586 -2.6633 4.5816 43 1 0.4044 -2.0282 3.7727 44 1 2.9873 -2.9090 2.4032 45 1 1.4406 -3.7902 2.3921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601386707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:58 Heat of formation + Delta-G solvation = -121.900599 kcal Electronic energy + Delta-G solvation = -29224.310560 eV Core-core repulsion = 25332.574888 eV Total energy + Delta-G solvation = -3891.735672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.55703 -37.59087 -36.24682 -35.59137 -34.76623 -33.91698 -33.59744 -31.11912 -30.23266 -29.56325 -28.57270 -25.55364 -25.22654 -23.79715 -21.65172 -21.35154 -21.05897 -19.92767 -18.58238 -17.70436 -16.93531 -16.39914 -16.03397 -15.82909 -15.39745 -15.32673 -14.57745 -14.51114 -14.36256 -14.22441 -13.41353 -13.25334 -13.19033 -12.90447 -12.78526 -12.72507 -12.59449 -11.93819 -11.86194 -11.56457 -11.46283 -11.28707 -11.18470 -11.15782 -11.08786 -11.00759 -10.97799 -10.81369 -10.69336 -10.52128 -10.44159 -10.25113 -9.89532 -9.43781 -9.42358 -9.31128 -8.73757 -8.03604 -7.64342 -7.08916 -4.75561 1.58688 2.34164 2.70482 2.95235 3.01540 3.09405 3.75382 3.81489 3.98592 4.37187 4.68191 4.78756 4.82160 4.84059 5.00668 5.14950 5.26533 5.29603 5.45532 5.46827 5.56261 5.61517 5.69266 5.76921 5.84787 5.86852 5.94885 5.97913 6.04941 6.06975 6.19260 6.23642 6.25810 6.40758 6.57553 6.63643 6.77392 6.94706 7.08650 7.30451 7.34824 7.49468 7.60121 7.72331 7.80921 7.89387 8.28759 8.48181 8.64466 9.84911 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009344 B = 0.005826 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.967525 B = 4804.931817 C = 5839.991656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.170 3.830 3 H 0.094 0.906 4 N -1.114 6.114 5 S 2.697 3.303 6 O -0.966 6.966 7 O -0.997 6.997 8 C -0.780 4.780 9 C -0.001 4.001 10 C -0.254 4.254 11 C -0.075 4.075 12 C -0.162 4.162 13 C 0.186 3.814 14 C -0.441 4.441 15 H 0.090 0.910 16 C 0.081 3.919 17 N -0.769 5.769 18 Si 0.911 3.089 19 H -0.253 1.253 20 H -0.268 1.268 21 H -0.269 1.269 22 C 0.084 3.916 23 H 0.074 0.926 24 C -0.152 4.152 25 C -0.122 4.122 26 C -0.155 4.155 27 C 0.060 3.940 28 O -0.372 6.372 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.415 0.585 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.288 0.712 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.050 0.950 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.604 -2.401 11.733 13.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.062 3.938 3 H 0.112 0.888 4 N -0.870 5.870 5 S 2.795 3.205 6 O -0.956 6.956 7 O -0.988 6.988 8 C -0.875 4.875 9 C -0.021 4.021 10 C -0.274 4.274 11 C -0.094 4.094 12 C -0.182 4.182 13 C 0.181 3.819 14 C -0.469 4.469 15 H 0.108 0.892 16 C -0.141 4.141 17 N -0.392 5.392 18 Si 0.734 3.266 19 H -0.176 1.176 20 H -0.193 1.193 21 H -0.194 1.194 22 C 0.024 3.976 23 H 0.092 0.908 24 C -0.190 4.190 25 C -0.159 4.159 26 C -0.193 4.193 27 C -0.017 4.017 28 O -0.291 6.291 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.249 0.751 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.140 0.860 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.945 -2.349 10.656 12.935 hybrid contribution 1.199 -0.691 0.838 1.618 sum -5.746 -3.039 11.494 13.204 Atomic orbital electron populations 1.22262 0.95142 1.02944 1.02165 1.20572 0.94552 0.95323 0.83325 0.88762 1.55707 1.81773 1.18993 1.30479 1.01198 0.73606 0.73186 0.72548 1.93545 1.81556 1.62325 1.58166 1.93446 1.55566 1.65889 1.83854 1.29837 1.17154 1.05918 1.34620 1.20261 0.97242 0.92061 0.92563 1.20465 0.94778 0.97480 1.14705 1.20874 0.95805 0.95177 0.97560 1.21450 0.99801 0.92448 1.04470 1.16978 0.89123 0.92594 0.83222 1.19924 0.95122 0.91623 1.40191 0.89246 1.25974 0.95089 1.01431 0.91574 1.69817 1.03340 1.38783 1.27248 0.86177 0.79893 0.81113 0.79371 1.17586 1.19282 1.19435 1.22455 0.98008 0.83125 0.93967 0.90826 1.22260 1.02472 0.99657 0.94653 1.21576 1.00823 0.95597 0.97947 1.22181 1.01622 0.96899 0.98549 1.22536 0.99193 0.94505 0.85495 1.87903 1.69567 1.25932 1.45668 0.91462 0.91483 0.92141 0.75109 0.87441 0.88818 0.88922 0.86048 0.90125 0.90597 0.90510 0.91678 0.91681 0.91316 0.91248 0.93121 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 9.08 37.16 0.34 -1.98 16 2 C 0.17 2.65 2.67 -67.92 -0.18 2.47 16 3 H 0.09 1.49 7.79 -51.93 -0.40 1.08 16 4 N -1.11 -20.07 4.71 -4.89 -0.02 -20.09 16 5 S 2.70 59.53 4.87 -107.50 -0.52 59.00 16 6 O -0.97 -24.42 16.34 -57.17 -0.93 -25.36 16 7 O -1.00 -22.68 16.54 -57.17 -0.95 -23.63 16 8 C -0.78 -18.48 5.74 -38.87 -0.22 -18.70 16 9 C 0.00 -0.03 9.53 -39.66 -0.38 -0.41 16 10 C -0.25 -5.48 10.05 -39.29 -0.39 -5.87 16 11 C -0.08 -1.67 10.02 -39.66 -0.40 -2.06 16 12 C -0.16 -3.95 8.69 -38.87 -0.34 -4.28 16 13 C 0.19 4.67 5.56 -106.83 -0.59 4.07 16 14 C -0.44 -10.97 7.67 -37.74 -0.29 -11.26 16 15 H 0.09 2.12 5.79 -52.48 -0.30 1.81 16 16 C 0.08 1.94 5.15 -17.34 -0.09 1.85 16 17 N -0.77 -18.78 10.99 55.55 0.61 -18.17 16 18 Si 0.91 17.82 29.59 -169.99 -5.03 12.79 16 19 H -0.25 -4.84 7.11 56.52 0.40 -4.44 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 21 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 22 C 0.08 1.17 2.54 -26.68 -0.07 1.10 16 23 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 24 C -0.15 -1.73 5.22 -26.59 -0.14 -1.86 16 25 C -0.12 -1.21 6.03 -26.55 -0.16 -1.37 16 26 C -0.15 -1.45 6.14 -26.59 -0.16 -1.62 16 27 C 0.06 0.66 6.84 37.21 0.25 0.92 16 28 O -0.37 -5.12 9.24 -35.23 -0.33 -5.44 16 29 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 30 H 0.07 0.92 7.56 -51.93 -0.39 0.53 16 31 H 0.06 0.70 6.52 -51.93 -0.34 0.37 16 32 H 0.41 7.08 8.47 -34.47 -0.29 6.78 16 33 H 0.11 2.23 7.32 -52.48 -0.38 1.85 16 34 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 35 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.12 2.98 6.23 -52.49 -0.33 2.65 16 37 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 38 H 0.08 0.81 6.46 -51.93 -0.34 0.47 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 368.13 15.07 5.55 5.55 Total: -1.00 -30.03 368.13 -11.00 -41.02 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -6.55 Total: 13.34 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: -2.82 Total: -39.02 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.59 Total: -38.26 kcal Atomic # 8 Polarization: -52.23 SS G_CDS: -2.21 Total: -54.43 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Atomic # 16 Polarization: 59.53 SS G_CDS: -0.52 Total: 59.00 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.03 -11.00 -41.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601386707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.876 kcal (2) G-P(sol) polarization free energy of solvation -30.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds