Wall clock time and date at job start Tue Mar 31 2020 22:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47759 * 2 1 4 4 N 1.46507 * 109.47166 * 239.99659 * 2 1 3 5 5 S 1.65592 * 119.99797 * 97.65302 * 4 2 1 6 6 O 1.42108 * 106.40119 * 177.21018 * 5 4 2 7 7 O 1.42097 * 106.40747 * 310.12959 * 5 4 2 8 8 C 1.76205 * 107.21884 * 63.67340 * 5 4 2 9 9 C 1.37634 * 120.12382 * 246.72178 * 8 5 4 10 10 C 1.38615 * 120.24653 * 179.70199 * 9 8 5 11 11 C 1.38658 * 120.50097 * 0.59079 * 10 9 8 12 12 C 1.37597 * 120.24620 * 359.68592 * 11 10 9 13 13 C 1.40697 * 120.12691 * 66.99166 * 8 5 4 14 14 C 1.41390 * 120.24452 * 0.02588 * 13 8 5 15 15 H 1.08003 * 120.00526 * 334.13143 * 14 13 8 16 16 C 1.39952 * 119.99719 * 154.13880 * 14 13 8 17 17 N 1.30822 * 119.99915 * 343.08984 * 16 14 13 18 18 Si 1.86795 * 119.99812 * 163.10026 * 16 14 13 19 19 H 1.48502 * 109.47721 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47434 * 119.99555 * 18 16 14 21 21 H 1.48498 * 109.46894 * 239.99557 * 18 16 14 22 22 C 1.53005 * 109.47126 * 120.00082 * 2 1 3 23 23 H 1.09001 * 109.48076 * 175.02138 * 22 2 1 24 24 C 1.53089 * 109.47764 * 295.05503 * 22 2 1 25 25 C 1.53185 * 109.16476 * 177.59302 * 24 22 2 26 26 C 1.53175 * 109.03183 * 303.01803 * 25 24 22 27 27 C 1.53093 * 109.16556 * 56.98306 * 26 25 24 28 28 O 1.42904 * 109.48272 * 54.99717 * 22 2 1 29 29 H 1.08999 * 109.47030 * 59.99819 * 1 2 3 30 30 H 1.08996 * 109.47121 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46596 * 300.00302 * 1 2 3 32 32 H 0.97003 * 119.99820 * 277.66204 * 4 2 1 33 33 H 1.08003 * 119.87927 * 359.97438 * 9 8 5 34 34 H 1.08003 * 119.75432 * 180.29993 * 10 9 8 35 35 H 1.08001 * 119.88069 * 179.70738 * 11 10 9 36 36 H 1.08001 * 120.13217 * 180.02562 * 12 11 10 37 37 H 0.96999 * 119.99713 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.52829 * 57.68255 * 24 22 2 39 39 H 1.09001 * 109.52483 * 297.49461 * 24 22 2 40 40 H 1.08997 * 109.54635 * 183.15102 * 25 24 22 41 41 H 1.08998 * 109.53930 * 62.88171 * 25 24 22 42 42 H 1.08999 * 109.51886 * 176.88374 * 26 25 24 43 43 H 1.08997 * 109.52553 * 297.07206 * 26 25 24 44 44 H 1.08999 * 109.48468 * 62.36729 * 27 26 25 45 45 H 1.09001 * 109.48138 * 182.40662 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 16 2.4744 0.1817 -2.5277 6 8 2.9545 -0.7590 -3.4786 7 8 1.4126 1.0866 -2.7977 8 6 3.8590 1.1650 -2.0579 9 6 3.7482 2.5361 -2.0107 10 6 4.8340 3.3118 -1.6356 11 6 6.0458 2.7186 -1.3157 12 6 6.1809 1.3500 -1.3615 13 6 5.0836 0.5520 -1.7351 14 6 5.2108 -0.8552 -1.7862 15 1 4.3404 -1.4813 -1.6562 16 6 6.4647 -1.4369 -2.0050 17 7 7.4453 -0.7162 -2.4850 18 14 6.7381 -3.2425 -1.6119 19 1 5.4805 -3.8303 -1.0843 20 1 7.1415 -3.9624 -2.8464 21 1 7.8097 -3.3702 -0.5918 22 6 2.0400 -0.7213 1.2493 23 1 3.1264 -0.7993 1.2060 24 6 1.6339 0.0685 2.4962 25 6 2.0954 -0.6902 3.7444 26 6 1.4912 -2.0976 3.7254 27 6 1.9028 -2.8038 2.4309 28 8 1.4703 -2.0305 1.3097 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.0744 -1.6590 -1.2082 33 1 2.8106 3.0092 -2.2627 34 1 4.7369 4.3868 -1.5965 35 1 6.8866 3.3329 -1.0293 36 1 7.1255 0.8898 -1.1116 37 1 8.3143 -1.1195 -2.6370 38 1 0.5500 0.1818 2.5188 39 1 2.1034 1.0519 2.4735 40 1 1.7606 -0.1617 4.6370 41 1 3.1831 -0.7603 3.7470 42 1 1.8586 -2.6633 4.5816 43 1 0.4044 -2.0282 3.7727 44 1 2.9873 -2.9090 2.4032 45 1 1.4406 -3.7902 2.3921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601386707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:57 Heat of formation + Delta-G solvation = -140.901823 kcal Electronic energy + Delta-G solvation = -29225.134515 eV Core-core repulsion = 25332.574888 eV Total energy + Delta-G solvation = -3892.559627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.56423 -39.37252 -38.04418 -36.88419 -36.63376 -35.69631 -34.49000 -32.30851 -31.98693 -31.35244 -29.70230 -27.36005 -26.23203 -24.71913 -23.43202 -22.98183 -22.31967 -20.90279 -20.22893 -19.50635 -18.56842 -17.93512 -17.45638 -17.05808 -16.97956 -16.51359 -16.05347 -15.96661 -15.44189 -15.40047 -15.08002 -14.95356 -14.49238 -14.36137 -14.15824 -13.84906 -13.62010 -13.52454 -13.29780 -13.08979 -13.01780 -12.88768 -12.82754 -12.79001 -12.65719 -12.47228 -12.21039 -12.13100 -12.02533 -11.79401 -11.64632 -11.54256 -11.28852 -11.18369 -11.04454 -10.33064 -10.19020 -9.83206 -9.46350 -8.85288 -6.60584 -0.14649 0.54047 0.96434 1.33813 1.46777 1.49931 2.13535 2.34340 2.59995 2.82436 3.04137 3.48593 3.70631 3.86951 3.93909 3.99838 4.05825 4.16261 4.25526 4.34810 4.38846 4.46789 4.50526 4.61863 4.68818 4.73994 4.79822 4.91518 4.96655 4.99517 5.03210 5.10877 5.14741 5.15710 5.21422 5.28778 5.34991 5.44455 5.51925 5.52715 5.71679 5.81739 6.01555 6.08730 6.23710 6.36446 6.47761 6.65916 6.83501 8.12036 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009344 B = 0.005826 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.967525 B = 4804.931817 C = 5839.991656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.160 3.840 3 H 0.090 0.910 4 N -1.104 6.104 5 S 2.715 3.285 6 O -1.003 7.003 7 O -1.006 7.006 8 C -0.795 4.795 9 C -0.014 4.014 10 C -0.252 4.252 11 C -0.073 4.073 12 C -0.189 4.189 13 C 0.163 3.837 14 C -0.470 4.470 15 H 0.090 0.910 16 C 0.041 3.959 17 N -0.801 5.801 18 Si 0.971 3.029 19 H -0.249 1.249 20 H -0.267 1.267 21 H -0.252 1.252 22 C 0.089 3.911 23 H 0.051 0.949 24 C -0.149 4.149 25 C -0.122 4.122 26 C -0.148 4.148 27 C 0.050 3.950 28 O -0.386 6.386 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.419 0.581 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.296 0.704 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.056 0.944 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.042 0.958 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.380 -2.396 13.702 15.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.053 3.947 3 H 0.108 0.892 4 N -0.863 5.863 5 S 2.812 3.188 6 O -0.994 6.994 7 O -0.996 6.996 8 C -0.889 4.889 9 C -0.034 4.034 10 C -0.272 4.272 11 C -0.092 4.092 12 C -0.209 4.209 13 C 0.158 3.842 14 C -0.498 4.498 15 H 0.108 0.892 16 C -0.178 4.178 17 N -0.424 5.424 18 Si 0.790 3.210 19 H -0.172 1.172 20 H -0.192 1.192 21 H -0.176 1.176 22 C 0.029 3.971 23 H 0.069 0.931 24 C -0.188 4.188 25 C -0.160 4.160 26 C -0.186 4.186 27 C -0.026 4.026 28 O -0.306 6.306 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.255 0.745 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.130 0.870 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.714 -2.322 12.633 14.984 hybrid contribution 1.395 -0.599 0.236 1.536 sum -6.320 -2.921 12.870 14.632 Atomic orbital electron populations 1.22212 0.93560 1.03294 1.02804 1.20866 0.95787 0.95129 0.82914 0.89246 1.55376 1.81435 1.18982 1.30503 1.00512 0.73015 0.72656 0.72666 1.93486 1.82164 1.63293 1.60407 1.93423 1.55488 1.66291 1.84403 1.30073 1.17474 1.06918 1.34447 1.20580 0.98382 0.91822 0.92566 1.20868 0.94009 0.99187 1.13114 1.21226 0.97084 0.94639 0.96236 1.21505 0.99535 0.93637 1.06185 1.17271 0.89937 0.93203 0.83758 1.20157 0.95974 0.91970 1.41682 0.89196 1.26794 0.94524 1.05475 0.90975 1.69840 1.04015 1.40618 1.27962 0.85312 0.80278 0.75952 0.79452 1.17237 1.19211 1.17602 1.22296 0.96587 0.83844 0.94341 0.93136 1.22254 1.03204 0.99421 0.93892 1.21602 1.00436 0.96064 0.97860 1.22141 1.01950 0.96452 0.98039 1.22768 0.98980 0.95176 0.85710 1.87871 1.69588 1.25922 1.47182 0.92883 0.91250 0.89394 0.74543 0.85938 0.85474 0.86007 0.87038 0.89248 0.89396 0.90399 0.89764 0.92478 0.89465 0.90628 0.93937 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 9.08 71.98 0.65 -3.60 16 2 C 0.16 4.92 2.67 44.99 0.12 5.04 16 3 H 0.09 2.81 7.79 -2.39 -0.02 2.80 16 4 N -1.10 -40.36 4.71 -169.37 -0.80 -41.16 16 5 S 2.71 122.06 4.87 -56.49 -0.28 121.78 16 6 O -1.00 -52.26 16.34 -128.00 -2.09 -54.35 16 7 O -1.01 -45.93 16.54 -128.00 -2.12 -48.04 16 8 C -0.79 -38.21 5.74 22.73 0.13 -38.08 16 9 C -0.01 -0.61 9.53 22.22 0.21 -0.40 16 10 C -0.25 -10.45 10.05 22.46 0.23 -10.22 16 11 C -0.07 -3.17 10.02 22.22 0.22 -2.95 16 12 C -0.19 -9.35 8.69 22.73 0.20 -9.15 16 13 C 0.16 8.39 5.56 -21.29 -0.12 8.28 16 14 C -0.47 -24.11 7.67 23.46 0.18 -23.93 16 15 H 0.09 4.42 5.79 -2.91 -0.02 4.40 16 16 C 0.04 2.00 5.15 85.26 0.44 2.44 16 17 N -0.80 -39.99 10.99 21.83 0.24 -39.75 16 18 Si 0.97 36.72 29.59 68.60 2.03 38.75 16 19 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 20 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 21 H -0.25 -8.75 7.11 99.48 0.71 -8.04 16 22 C 0.09 2.43 2.54 30.63 0.08 2.51 16 23 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 24 C -0.15 -3.13 5.22 30.69 0.16 -2.97 16 25 C -0.12 -2.16 6.03 30.71 0.19 -1.97 16 26 C -0.15 -2.40 6.14 30.68 0.19 -2.21 16 27 C 0.05 1.04 6.84 72.01 0.49 1.53 16 28 O -0.39 -10.25 9.24 -148.98 -1.38 -11.63 16 29 H 0.05 1.56 7.92 -2.39 -0.02 1.54 16 30 H 0.07 1.81 7.56 -2.39 -0.02 1.79 16 31 H 0.09 1.83 6.52 -2.38 -0.02 1.82 16 32 H 0.42 14.62 8.47 -96.74 -0.82 13.80 16 33 H 0.12 4.96 7.32 -2.91 -0.02 4.94 16 34 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 35 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 36 H 0.11 5.65 6.23 -2.91 -0.02 5.63 16 37 H 0.30 13.16 8.30 -92.71 -0.77 12.39 16 38 H 0.09 1.63 6.46 -2.39 -0.02 1.61 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -65.16 368.13 -0.83 -66.00 By element: Atomic # 1 Polarization: 43.90 SS G_CDS: 0.19 Total: 44.09 kcal Atomic # 6 Polarization: -79.05 SS G_CDS: 3.37 Total: -75.68 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -0.56 Total: -80.91 kcal Atomic # 8 Polarization: -108.44 SS G_CDS: -5.58 Total: -114.02 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 2.03 Total: 38.75 kcal Atomic # 16 Polarization: 122.06 SS G_CDS: -0.28 Total: 121.78 kcal Total: -65.16 -0.83 -66.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601386707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.905 kcal (2) G-P(sol) polarization free energy of solvation -65.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds