Wall clock time and date at job start Tue Mar 31 2020 22:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47422 * 2 1 4 4 N 1.46503 * 109.47062 * 239.99906 * 2 1 3 5 5 S 1.65597 * 119.99693 * 93.26849 * 4 2 1 6 6 O 1.42096 * 106.40163 * 311.30935 * 5 4 2 7 7 O 1.42105 * 106.40009 * 178.39395 * 5 4 2 8 8 C 1.76202 * 107.21985 * 64.85497 * 5 4 2 9 9 C 1.37639 * 120.12527 * 245.63727 * 8 5 4 10 10 C 1.38616 * 120.24540 * 180.02562 * 9 8 5 11 11 C 1.38653 * 120.50303 * 359.97438 * 10 9 8 12 12 C 1.37596 * 120.24795 * 0.02562 * 11 10 9 13 13 C 1.40697 * 120.12957 * 65.65434 * 8 5 4 14 14 C 1.41402 * 120.24347 * 359.96058 * 13 8 5 15 15 H 1.08001 * 119.99374 * 334.32609 * 14 13 8 16 16 C 1.39938 * 120.00131 * 154.32837 * 14 13 8 17 17 N 1.30826 * 120.00202 * 341.86482 * 16 14 13 18 18 Si 1.86800 * 120.00132 * 161.86317 * 16 14 13 19 19 H 1.48503 * 109.46873 * 60.00145 * 18 16 14 20 20 H 1.48501 * 109.47116 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47287 * 300.00281 * 18 16 14 22 22 C 1.53009 * 109.47097 * 120.00576 * 2 1 3 23 23 H 1.09008 * 109.47290 * 300.01908 * 22 2 1 24 24 C 1.53088 * 109.48145 * 180.02562 * 22 2 1 25 25 C 1.53176 * 109.16453 * 182.40741 * 24 22 2 26 26 C 1.53171 * 109.03745 * 56.97353 * 25 24 22 27 27 C 1.53093 * 109.16583 * 303.02238 * 26 25 24 28 28 O 1.42901 * 109.48306 * 60.05337 * 22 2 1 29 29 H 1.08997 * 109.46844 * 299.99757 * 1 2 3 30 30 H 1.09001 * 109.46813 * 59.99934 * 1 2 3 31 31 H 1.08998 * 109.46935 * 179.97438 * 1 2 3 32 32 H 0.97002 * 120.00520 * 273.26651 * 4 2 1 33 33 H 1.07998 * 119.87436 * 0.02562 * 9 8 5 34 34 H 1.07999 * 119.74277 * 180.02562 * 10 9 8 35 35 H 1.07999 * 119.87304 * 180.28343 * 11 10 9 36 36 H 1.08004 * 120.12658 * 180.02562 * 12 11 10 37 37 H 0.96996 * 120.00273 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.52234 * 302.30999 * 24 22 2 39 39 H 1.09004 * 109.52530 * 62.43042 * 24 22 2 40 40 H 1.08998 * 109.54611 * 176.84985 * 25 24 22 41 41 H 1.09005 * 109.53912 * 297.10610 * 25 24 22 42 42 H 1.09001 * 109.52233 * 62.92987 * 26 25 24 43 43 H 1.08997 * 109.52432 * 183.11685 * 26 25 24 44 44 H 1.09000 * 109.47972 * 177.58978 * 27 26 25 45 45 H 1.08998 * 109.48263 * 297.61701 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 2.3714 0.1727 -2.5645 6 8 1.2576 1.0227 -2.8012 7 8 2.8497 -0.7656 -3.5186 8 6 3.7295 1.2274 -2.1799 9 6 3.5634 2.5937 -2.1758 10 6 4.6302 3.4258 -1.8742 11 6 5.8746 2.8936 -1.5730 12 6 6.0636 1.5307 -1.5710 13 6 4.9878 0.6762 -1.8761 14 6 5.1701 -0.7260 -1.8767 15 1 4.3297 -1.3798 -1.6955 16 6 6.4392 -1.2666 -2.1121 17 7 7.3682 -0.5351 -2.6721 18 14 6.8070 -3.0325 -1.6267 19 1 5.8878 -3.9466 -2.3510 20 1 8.2113 -3.3609 -1.9806 21 1 6.6140 -3.1940 -0.1632 22 6 2.0400 -0.7214 1.2492 23 1 1.6764 -0.2079 2.1394 24 6 3.5709 -0.7210 1.2498 25 6 4.0735 -1.4966 2.4713 26 6 3.4925 -2.9134 2.4373 27 6 1.9646 -2.8291 2.3909 28 8 1.5649 -2.0691 1.2487 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.1349 -1.6536 -1.1867 33 1 2.5984 3.0191 -2.4086 34 1 4.4908 4.4968 -1.8730 35 1 6.6976 3.5512 -1.3349 36 1 7.0336 1.1182 -1.3357 37 1 8.2480 -0.9097 -2.8349 38 1 3.9356 -1.1981 0.3401 39 1 3.9349 0.3055 1.2938 40 1 5.1620 -1.5481 2.4480 41 1 3.7506 -0.9918 3.3819 42 1 3.8556 -3.4348 1.5516 43 1 3.8004 -3.4550 3.3317 44 1 1.5470 -3.8337 2.3234 45 1 1.5997 -2.3438 3.2961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601386708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:01 Heat of formation + Delta-G solvation = -139.533934 kcal Electronic energy + Delta-G solvation = -29834.527549 eV Core-core repulsion = 25942.027237 eV Total energy + Delta-G solvation = -3892.500311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.51977 -39.34054 -38.02163 -36.83961 -36.60689 -35.67685 -34.44690 -32.04391 -31.80275 -31.32786 -30.19501 -27.33690 -26.13831 -24.40553 -23.40152 -22.95153 -22.18177 -21.05067 -20.24296 -19.47884 -18.55664 -17.95864 -17.55042 -17.11091 -16.85074 -16.28631 -16.02610 -15.56674 -15.48346 -15.25500 -15.01336 -14.93111 -14.70789 -14.45790 -14.19483 -13.67227 -13.66364 -13.45546 -13.28871 -13.01456 -12.94489 -12.85731 -12.82055 -12.74587 -12.54693 -12.49428 -12.24328 -12.18744 -11.96819 -11.87291 -11.63407 -11.41271 -11.16921 -11.11711 -11.02597 -10.30428 -10.12667 -9.80312 -9.43398 -8.83903 -6.56191 -0.10898 0.57602 0.99840 1.33762 1.43872 1.50865 2.13441 2.38110 2.62518 2.87276 3.08126 3.51732 3.69623 3.89986 3.99817 4.05723 4.12733 4.22166 4.34566 4.38054 4.43342 4.51583 4.53191 4.59632 4.71605 4.75988 4.81041 4.92087 4.98607 5.02161 5.06264 5.13665 5.16764 5.27955 5.30317 5.34832 5.36759 5.52123 5.54401 5.62619 5.74737 5.84105 6.04344 6.11784 6.27550 6.43000 6.50625 6.68873 6.86853 8.13274 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008999 B = 0.007317 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3110.636357 B = 3825.953902 C = 5267.192162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.089 0.911 4 N -1.099 6.099 5 S 2.714 3.286 6 O -1.007 7.007 7 O -1.005 7.005 8 C -0.794 4.794 9 C -0.013 4.013 10 C -0.254 4.254 11 C -0.075 4.075 12 C -0.187 4.187 13 C 0.171 3.829 14 C -0.461 4.461 15 H 0.091 0.909 16 C 0.046 3.954 17 N -0.799 5.799 18 Si 0.960 3.040 19 H -0.263 1.263 20 H -0.264 1.264 21 H -0.241 1.241 22 C 0.099 3.901 23 H 0.088 0.912 24 C -0.161 4.161 25 C -0.118 4.118 26 C -0.157 4.157 27 C 0.060 3.940 28 O -0.388 6.388 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.419 0.581 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.296 0.704 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.090 0.910 44 H 0.105 0.895 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.691 -3.283 13.214 14.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.052 3.948 3 H 0.107 0.893 4 N -0.859 5.859 5 S 2.811 3.189 6 O -0.998 6.998 7 O -0.996 6.996 8 C -0.888 4.888 9 C -0.033 4.033 10 C -0.274 4.274 11 C -0.093 4.093 12 C -0.207 4.207 13 C 0.167 3.833 14 C -0.488 4.488 15 H 0.109 0.891 16 C -0.174 4.174 17 N -0.422 5.422 18 Si 0.780 3.220 19 H -0.187 1.187 20 H -0.188 1.188 21 H -0.165 1.165 22 C 0.040 3.960 23 H 0.106 0.894 24 C -0.199 4.199 25 C -0.156 4.156 26 C -0.194 4.194 27 C -0.016 4.016 28 O -0.307 6.307 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.255 0.745 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.072 0.928 43 H 0.108 0.892 44 H 0.123 0.877 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.056 -3.251 12.155 13.964 hybrid contribution 1.492 -0.465 0.187 1.574 sum -4.565 -3.716 12.342 13.674 Atomic orbital electron populations 1.22231 0.93773 1.03291 1.02898 1.20925 0.95301 0.95255 0.83319 0.89344 1.55290 1.82313 1.19538 1.28756 1.00507 0.73010 0.72741 0.72639 1.93419 1.52278 1.69057 1.85012 1.93485 1.82350 1.63458 1.60293 1.30058 1.16295 1.07853 1.34628 1.20550 0.98406 0.91796 0.92527 1.20826 0.93718 0.98912 1.13930 1.21194 0.96806 0.95019 0.96303 1.21468 0.99464 0.93216 1.06552 1.17160 0.89569 0.93237 0.83375 1.20009 0.96015 0.91891 1.40898 0.89111 1.26705 0.94986 1.04426 0.91268 1.69841 1.05250 1.40351 1.26800 0.85556 0.78601 0.76828 0.81047 1.18742 1.18823 1.16453 1.22261 0.92864 0.83744 0.97112 0.89411 1.22289 0.96105 1.01288 1.00197 1.21550 1.00336 0.95871 0.97809 1.22205 0.97199 0.97177 1.02848 1.22709 0.93550 0.96739 0.88584 1.87872 1.74411 1.23294 1.45143 0.89540 0.92864 0.91227 0.74506 0.86183 0.85785 0.86291 0.87216 0.89344 0.91157 0.92009 0.92566 0.90464 0.92839 0.89158 0.87719 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 9.37 71.98 0.67 -3.58 16 2 C 0.16 4.73 2.60 44.99 0.12 4.84 16 3 H 0.09 2.70 7.84 -2.39 -0.02 2.68 16 4 N -1.10 -39.18 3.86 -169.37 -0.65 -39.83 16 5 S 2.71 120.46 4.88 -56.49 -0.28 120.19 16 6 O -1.01 -45.66 16.05 -128.00 -2.05 -47.72 16 7 O -1.01 -52.05 16.46 -128.00 -2.11 -54.15 16 8 C -0.79 -37.47 5.77 22.73 0.13 -37.34 16 9 C -0.01 -0.58 9.54 22.22 0.21 -0.36 16 10 C -0.25 -10.51 10.05 22.46 0.23 -10.28 16 11 C -0.07 -3.21 10.02 22.22 0.22 -2.99 16 12 C -0.19 -9.10 8.69 22.73 0.20 -8.90 16 13 C 0.17 8.56 5.56 -21.29 -0.12 8.44 16 14 C -0.46 -22.75 6.72 23.46 0.16 -22.59 16 15 H 0.09 4.29 4.88 -2.91 -0.01 4.28 16 16 C 0.05 2.17 5.12 85.25 0.44 2.61 16 17 N -0.80 -39.37 11.06 21.82 0.24 -39.12 16 18 Si 0.96 36.09 29.60 68.60 2.03 38.12 16 19 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 20 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 21 H -0.24 -8.35 7.11 99.48 0.71 -7.65 16 22 C 0.10 2.54 2.43 30.63 0.07 2.62 16 23 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 24 C -0.16 -4.73 5.29 30.68 0.16 -4.57 16 25 C -0.12 -2.81 6.03 30.71 0.19 -2.63 16 26 C -0.16 -3.27 6.14 30.68 0.19 -3.08 16 27 C 0.06 1.15 6.84 72.01 0.49 1.64 16 28 O -0.39 -9.75 9.23 -148.98 -1.37 -11.12 16 29 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.05 1.57 7.45 -2.39 -0.02 1.56 16 31 H 0.07 1.76 7.68 -2.39 -0.02 1.74 16 32 H 0.42 14.38 8.15 -96.75 -0.79 13.59 16 33 H 0.12 4.87 7.32 -2.91 -0.02 4.85 16 34 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 35 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 36 H 0.11 5.46 6.27 -2.91 -0.02 5.44 16 37 H 0.30 13.10 8.30 -92.71 -0.77 12.34 16 38 H 0.07 2.48 5.61 -2.39 -0.01 2.47 16 39 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 43 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -63.62 365.50 -0.61 -64.24 By element: Atomic # 1 Polarization: 45.37 SS G_CDS: 0.22 Total: 45.58 kcal Atomic # 6 Polarization: -79.54 SS G_CDS: 3.36 Total: -76.18 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -0.41 Total: -78.96 kcal Atomic # 8 Polarization: -107.46 SS G_CDS: -5.54 Total: -112.99 kcal Atomic # 14 Polarization: 36.09 SS G_CDS: 2.03 Total: 38.12 kcal Atomic # 16 Polarization: 120.46 SS G_CDS: -0.28 Total: 120.19 kcal Total: -63.62 -0.61 -64.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601386708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.297 kcal (2) G-P(sol) polarization free energy of solvation -63.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds