Wall clock time and date at job start Tue Mar 31 2020 22:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47484 * 2 1 4 4 N 1.46508 * 109.46924 * 240.00201 * 2 1 3 5 5 S 1.65597 * 119.99808 * 94.76225 * 4 2 1 6 6 O 1.42109 * 106.40044 * 311.25393 * 5 4 2 7 7 O 1.42104 * 106.39887 * 178.34077 * 5 4 2 8 8 C 1.76191 * 107.22334 * 64.79581 * 5 4 2 9 9 C 1.37642 * 120.13081 * 244.99944 * 8 5 4 10 10 C 1.38611 * 120.24643 * 179.97438 * 9 8 5 11 11 C 1.38655 * 120.50495 * 0.02562 * 10 9 8 12 12 C 1.37600 * 120.24849 * 0.02562 * 11 10 9 13 13 C 1.40701 * 120.12528 * 64.97643 * 8 5 4 14 14 C 1.41393 * 120.24546 * 0.02562 * 13 8 5 15 15 H 1.07996 * 119.99865 * 329.36100 * 14 13 8 16 16 C 1.39944 * 119.99924 * 149.35992 * 14 13 8 17 17 N 1.30831 * 119.99993 * 166.10712 * 16 14 13 18 18 Si 1.86802 * 120.00073 * 346.10403 * 16 14 13 19 19 H 1.48493 * 109.47102 * 88.57211 * 18 16 14 20 20 H 1.48505 * 109.47006 * 208.57245 * 18 16 14 21 21 H 1.48502 * 109.47173 * 328.56587 * 18 16 14 22 22 C 1.53000 * 109.47378 * 120.00353 * 2 1 3 23 23 H 1.08998 * 109.52068 * 59.99850 * 22 2 1 24 24 C 1.53176 * 109.51923 * 299.87371 * 22 2 1 25 25 C 1.53182 * 109.03413 * 183.11217 * 24 22 2 26 26 C 1.53092 * 109.16042 * 56.98128 * 25 24 22 27 27 O 1.42893 * 109.41817 * 302.38776 * 26 25 24 28 28 C 1.42910 * 114.15335 * 61.12692 * 27 26 25 29 29 H 1.08995 * 109.47183 * 59.99773 * 1 2 3 30 30 H 1.09001 * 109.46668 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46909 * 299.99771 * 1 2 3 32 32 H 0.97000 * 119.99826 * 274.76045 * 4 2 1 33 33 H 1.07997 * 119.87181 * 359.97438 * 9 8 5 34 34 H 1.07995 * 119.74668 * 180.02562 * 10 9 8 35 35 H 1.07998 * 119.87785 * 179.72417 * 11 10 9 36 36 H 1.08000 * 120.12623 * 179.97438 * 12 11 10 37 37 H 0.96996 * 119.99705 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.54239 * 302.97824 * 24 22 2 39 39 H 1.08996 * 109.54446 * 63.24939 * 24 22 2 40 40 H 1.09006 * 109.52199 * 176.88610 * 25 24 22 41 41 H 1.08994 * 109.52424 * 297.06974 * 25 24 22 42 42 H 1.09000 * 109.48001 * 62.37538 * 26 25 24 43 43 H 1.09000 * 109.47767 * 182.40497 * 26 25 24 44 44 H 1.09001 * 109.54164 * 178.92630 * 28 27 26 45 45 H 1.08998 * 109.42544 * 58.89155 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 16 2.4065 0.1767 -2.5525 6 8 1.3133 1.0514 -2.7959 7 8 2.8777 -0.7632 -3.5085 8 6 3.7807 1.2001 -2.1417 9 6 3.6461 2.5699 -2.1408 10 6 4.7255 3.3773 -1.8174 11 6 5.9512 2.8167 -1.4922 12 6 6.1090 1.4498 -1.4877 13 6 5.0197 0.6201 -1.8129 14 6 5.1698 -0.7858 -1.8105 15 1 4.3288 -1.4182 -1.5676 16 6 6.4082 -1.3578 -2.1231 17 7 6.6299 -2.6206 -1.8625 18 14 7.7446 -0.3184 -2.9124 19 1 8.5574 0.3308 -1.8527 20 1 8.6176 -1.1839 -3.7455 21 1 7.1211 0.7241 -3.7667 22 6 2.0401 -0.7213 1.2492 23 1 1.6772 -1.7491 1.2500 24 6 1.5327 0.0017 2.5007 25 6 2.1127 -0.6825 3.7425 26 6 3.6408 -0.6805 3.6496 27 8 4.0447 -1.3408 2.4485 28 6 3.5710 -0.7193 1.2519 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.1142 -1.6559 -1.1938 33 1 2.6961 3.0172 -2.3929 34 1 4.6108 4.4511 -1.8188 35 1 6.7866 3.4554 -1.2463 36 1 7.0648 1.0153 -1.2345 37 1 7.4881 -3.0171 -2.0795 38 1 1.8530 1.0432 2.4751 39 1 0.4443 -0.0459 2.5332 40 1 1.8013 -0.1408 4.6357 41 1 1.7522 -1.7097 3.7943 42 1 4.0030 0.3475 3.6388 43 1 4.0579 -1.2039 4.5100 44 1 3.9368 -1.2703 0.3855 45 1 3.9332 0.3079 1.2091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601388245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:39 Heat of formation + Delta-G solvation = -117.270081 kcal Electronic energy + Delta-G solvation = -29687.397172 eV Core-core repulsion = 25795.862294 eV Total energy + Delta-G solvation = -3891.534878 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.40872 -37.90680 -36.51309 -36.08443 -34.88384 -33.88567 -33.05837 -30.78963 -30.61463 -30.14496 -28.86836 -25.45530 -24.91382 -23.55052 -22.10892 -21.39696 -21.12824 -20.05254 -18.64863 -17.80507 -17.06056 -16.55340 -16.07350 -15.77103 -15.50075 -15.31753 -14.59627 -14.44678 -14.23158 -14.12530 -13.82762 -13.54097 -13.14667 -13.06931 -12.97099 -12.79917 -12.36835 -12.19968 -11.95687 -11.77140 -11.53572 -11.33727 -11.18096 -11.13993 -11.11904 -11.02039 -10.93211 -10.84181 -10.73945 -10.44165 -10.23532 -10.06509 -9.94546 -9.64581 -9.32809 -9.17547 -8.83360 -8.28902 -7.87358 -7.21535 -4.88496 1.45328 2.04457 2.49471 2.96185 3.08103 3.18303 3.77261 3.84157 4.17536 4.26142 4.65238 4.79145 4.90354 4.93764 5.01165 5.05981 5.24744 5.42355 5.47213 5.48973 5.61498 5.64463 5.74371 5.78937 5.82272 5.90218 5.91288 5.98833 6.01249 6.07997 6.09134 6.17045 6.29909 6.39226 6.45831 6.57597 6.63946 6.66681 6.90595 7.05812 7.21211 7.35076 7.50766 7.54113 7.58258 7.76190 8.00999 8.23368 8.47059 9.77417 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010220 B = 0.006241 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.983874 B = 4485.221142 C = 5420.177707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.165 3.835 3 H 0.084 0.916 4 N -1.116 6.116 5 S 2.699 3.301 6 O -0.995 6.995 7 O -0.961 6.961 8 C -0.772 4.772 9 C 0.017 3.983 10 C -0.261 4.261 11 C -0.042 4.042 12 C -0.240 4.240 13 C 0.161 3.839 14 C -0.427 4.427 15 H 0.104 0.896 16 C 0.090 3.910 17 N -0.775 5.775 18 Si 0.916 3.084 19 H -0.266 1.266 20 H -0.286 1.286 21 H -0.243 1.243 22 C -0.126 4.126 23 H 0.082 0.918 24 C -0.118 4.118 25 C -0.153 4.153 26 C 0.056 3.944 27 O -0.377 6.377 28 C 0.061 3.939 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.414 0.586 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.293 0.707 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.086 0.914 44 H 0.119 0.881 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.851 3.353 8.760 11.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.057 3.943 3 H 0.102 0.898 4 N -0.873 5.873 5 S 2.796 3.204 6 O -0.985 6.985 7 O -0.951 6.951 8 C -0.866 4.866 9 C -0.003 4.003 10 C -0.281 4.281 11 C -0.061 4.061 12 C -0.259 4.259 13 C 0.156 3.844 14 C -0.453 4.453 15 H 0.121 0.879 16 C -0.134 4.134 17 N -0.396 5.396 18 Si 0.742 3.258 19 H -0.192 1.192 20 H -0.213 1.213 21 H -0.166 1.166 22 C -0.146 4.146 23 H 0.101 0.899 24 C -0.156 4.156 25 C -0.191 4.191 26 C -0.021 4.021 27 O -0.296 6.296 28 C -0.016 4.016 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.248 0.752 33 H 0.131 0.869 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.127 0.873 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.104 0.896 44 H 0.137 0.863 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.105 3.008 7.940 10.458 hybrid contribution 1.165 0.501 0.279 1.299 sum -4.940 3.508 8.219 10.211 Atomic orbital electron populations 1.22369 0.95464 1.02399 1.02757 1.20532 0.93765 0.95961 0.84039 0.89810 1.55790 1.82470 1.19240 1.29786 1.01197 0.73516 0.73238 0.72475 1.93458 1.53298 1.67489 1.84278 1.93568 1.81799 1.62058 1.57670 1.29960 1.16728 1.06622 1.33301 1.20406 0.97393 0.91952 0.90538 1.20486 0.94452 0.97779 1.15386 1.20827 0.96089 0.94677 0.94524 1.21307 0.99579 0.93755 1.11294 1.17038 0.89612 0.92802 0.84994 1.19777 0.98061 0.90330 1.37172 0.87855 1.26152 0.99205 0.95435 0.92635 1.69618 1.25132 1.13079 1.31729 0.86304 0.79359 0.80137 0.79989 1.19220 1.21341 1.16585 1.22100 0.97824 1.00650 0.94045 0.89923 1.21687 1.00657 0.99524 0.93728 1.22174 0.97091 1.01621 0.98213 1.22534 0.93618 0.97436 0.88527 1.87995 1.74398 1.53552 1.13638 1.22913 0.91507 0.99230 0.87916 0.91065 0.92330 0.91808 0.75202 0.86909 0.88209 0.88351 0.87266 0.89639 0.91607 0.91133 0.91306 0.91236 0.93540 0.89565 0.86313 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 9.17 37.16 0.34 -1.83 16 2 C 0.16 2.41 2.36 -67.93 -0.16 2.25 16 3 H 0.08 1.28 7.84 -51.93 -0.41 0.87 16 4 N -1.12 -18.96 3.88 -4.89 -0.02 -18.98 16 5 S 2.70 56.44 4.88 -107.50 -0.52 55.92 16 6 O -0.99 -21.32 16.21 -57.17 -0.93 -22.25 16 7 O -0.96 -23.42 16.61 -57.17 -0.95 -24.37 16 8 C -0.77 -17.07 5.78 -38.87 -0.22 -17.30 16 9 C 0.02 0.35 9.54 -39.66 -0.38 -0.03 16 10 C -0.26 -5.12 10.05 -39.29 -0.39 -5.52 16 11 C -0.04 -0.86 10.02 -39.66 -0.40 -1.25 16 12 C -0.24 -5.37 7.18 -38.87 -0.28 -5.65 16 13 C 0.16 3.77 5.13 -106.82 -0.55 3.22 16 14 C -0.43 -10.44 7.23 -37.74 -0.27 -10.71 16 15 H 0.10 2.49 4.93 -52.49 -0.26 2.24 16 16 C 0.09 2.20 5.45 -17.34 -0.09 2.10 16 17 N -0.77 -19.09 13.93 55.55 0.77 -18.31 16 18 Si 0.92 19.99 24.46 -169.99 -4.16 15.83 16 19 H -0.27 -5.48 6.43 56.52 0.36 -5.12 16 20 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.24 -5.55 6.95 56.52 0.39 -5.15 16 22 C -0.13 -1.73 2.08 -90.48 -0.19 -1.91 16 23 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 24 C -0.12 -1.33 4.86 -26.55 -0.13 -1.46 16 25 C -0.15 -1.64 6.14 -26.59 -0.16 -1.80 16 26 C 0.06 0.72 6.84 37.20 0.25 0.97 16 27 O -0.38 -6.41 10.76 -35.23 -0.38 -6.79 16 28 C 0.06 1.02 5.94 37.21 0.22 1.24 16 29 H 0.07 1.01 7.61 -51.93 -0.40 0.62 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.67 6.51 -51.93 -0.34 0.33 16 32 H 0.41 6.57 8.58 -34.47 -0.30 6.28 16 33 H 0.11 2.14 7.32 -52.49 -0.38 1.75 16 34 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 36 H 0.11 2.41 4.32 -52.49 -0.23 2.18 16 37 H 0.29 6.53 8.30 -40.82 -0.34 6.20 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.69 6.62 -51.93 -0.34 0.34 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.12 2.30 5.54 -51.93 -0.29 2.01 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 357.82 15.07 5.39 5.39 Total: -1.00 -29.30 357.82 -9.55 -38.85 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -6.35 Total: 12.39 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: -2.41 Total: -37.68 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.75 Total: -37.29 kcal Atomic # 8 Polarization: -51.16 SS G_CDS: -2.26 Total: -53.41 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.16 Total: 15.83 kcal Atomic # 16 Polarization: 56.44 SS G_CDS: -0.52 Total: 55.92 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.30 -9.55 -38.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601388245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.417 kcal (2) G-P(sol) polarization free energy of solvation -29.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds