Wall clock time and date at job start Tue Mar 31 2020 22:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47546 * 2 1 4 4 N 1.46503 * 109.47179 * 240.00040 * 2 1 3 5 5 S 1.65604 * 119.99895 * 97.29351 * 4 2 1 6 6 O 1.42101 * 106.39874 * 312.07658 * 5 4 2 7 7 O 1.42092 * 106.40312 * 179.15537 * 5 4 2 8 8 C 1.76201 * 107.21866 * 65.61164 * 5 4 2 9 9 C 1.37635 * 120.12730 * 245.72586 * 8 5 4 10 10 C 1.38620 * 120.24576 * 179.97438 * 9 8 5 11 11 C 1.38654 * 120.49930 * 0.02562 * 10 9 8 12 12 C 1.37597 * 120.25344 * 359.66977 * 11 10 9 13 13 C 1.40695 * 120.12560 * 65.70550 * 8 5 4 14 14 C 1.41402 * 120.24526 * 0.02562 * 13 8 5 15 15 H 1.08002 * 120.00004 * 330.52132 * 14 13 8 16 16 C 1.39943 * 120.00130 * 150.52851 * 14 13 8 17 17 N 1.30823 * 119.99919 * 335.00942 * 16 14 13 18 18 Si 1.86792 * 120.00064 * 154.73949 * 16 14 13 19 19 H 1.48494 * 109.47632 * 59.99686 * 18 16 14 20 20 H 1.48507 * 109.47061 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47243 * 299.99416 * 18 16 14 22 22 C 1.53007 * 109.47140 * 120.00374 * 2 1 3 23 23 H 1.08996 * 109.51899 * 180.02562 * 22 2 1 24 24 C 1.53179 * 109.51828 * 300.12420 * 22 2 1 25 25 C 1.53180 * 109.03168 * 176.88625 * 24 22 2 26 26 C 1.53090 * 109.16641 * 303.01779 * 25 24 22 27 27 O 1.42908 * 109.41236 * 57.61009 * 26 25 24 28 28 C 1.42913 * 114.15434 * 298.87653 * 27 26 25 29 29 H 1.09001 * 109.46929 * 299.99910 * 1 2 3 30 30 H 1.08995 * 109.47047 * 59.99710 * 1 2 3 31 31 H 1.08996 * 109.47071 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00076 * 277.28801 * 4 2 1 33 33 H 1.07997 * 119.88089 * 359.95292 * 9 8 5 34 34 H 1.07999 * 119.74748 * 180.02562 * 10 9 8 35 35 H 1.08005 * 119.87259 * 179.97438 * 11 10 9 36 36 H 1.07996 * 120.13115 * 180.30001 * 12 11 10 37 37 H 0.97003 * 120.00180 * 353.92671 * 17 16 14 38 38 H 1.09001 * 109.54656 * 296.74896 * 24 22 2 39 39 H 1.08995 * 109.54634 * 57.01793 * 24 22 2 40 40 H 1.09001 * 109.52057 * 62.92695 * 25 24 22 41 41 H 1.09002 * 109.52311 * 183.04888 * 25 24 22 42 42 H 1.08998 * 109.48236 * 177.59202 * 26 25 24 43 43 H 1.09000 * 109.47795 * 297.61836 * 26 25 24 44 44 H 1.09001 * 109.42190 * 301.11312 * 28 27 26 45 45 H 1.08997 * 109.53736 * 181.07808 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 16 2.4660 0.1814 -2.5310 6 8 1.4192 1.1116 -2.7721 7 8 2.9052 -0.7624 -3.4981 8 6 3.8815 1.1305 -2.0833 9 6 3.8079 2.5043 -2.0441 10 6 4.9198 3.2534 -1.6918 11 6 6.1171 2.6297 -1.3757 12 6 6.2120 1.2572 -1.4021 13 6 5.0912 0.4868 -1.7641 14 6 5.1786 -0.9240 -1.8011 15 1 4.3040 -1.5247 -1.5994 16 6 6.3984 -1.5419 -2.0988 17 7 7.3011 -0.9041 -2.7987 18 14 6.7407 -3.2745 -1.4904 19 1 5.7234 -4.2037 -2.0442 20 1 8.0923 -3.6979 -1.9370 21 1 6.6786 -3.2996 -0.0070 22 6 2.0400 -0.7214 1.2492 23 1 3.1300 -0.7214 1.2503 24 6 1.5275 -0.0020 2.5007 25 6 1.9791 -0.7769 3.7425 26 6 1.4679 -2.2170 3.6498 27 8 1.9559 -2.8178 2.4485 28 6 1.5278 -2.1640 1.2519 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 2.0796 -1.6586 -1.2063 33 1 2.8805 3.0007 -2.2892 34 1 4.8529 4.3309 -1.6633 35 1 6.9772 3.2232 -1.1030 36 1 7.1442 0.7733 -1.1509 37 1 7.0929 -0.0394 -3.1858 38 1 1.9351 1.0084 2.5333 39 1 0.4388 0.0433 2.4751 40 1 3.0679 -0.7795 3.7942 41 1 1.5731 -0.3021 4.6358 42 1 1.8223 -2.7846 4.5101 43 1 0.3779 -2.2157 3.6390 44 1 0.4386 -2.1631 1.2092 45 1 1.9253 -2.6926 0.3855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601388246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:43 Heat of formation + Delta-G solvation = -125.928692 kcal Electronic energy + Delta-G solvation = -29252.373797 eV Core-core repulsion = 25360.463454 eV Total energy + Delta-G solvation = -3891.910344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.73130 -37.84226 -36.60123 -36.14314 -34.89013 -34.09386 -33.23708 -30.88099 -30.21047 -29.52314 -28.60860 -25.37829 -25.10399 -24.43287 -21.83718 -21.66770 -21.22170 -19.43850 -18.81153 -18.27359 -17.05671 -16.44971 -16.18124 -15.87478 -15.58800 -14.89954 -14.78193 -14.58531 -14.46400 -14.14083 -13.72463 -13.70703 -13.42559 -13.12955 -12.72647 -12.64963 -12.56611 -12.27552 -12.03255 -11.61516 -11.54246 -11.30960 -11.25218 -11.15141 -11.13691 -11.04058 -11.01458 -10.86672 -10.55995 -10.49088 -10.41589 -10.26681 -9.86369 -9.56050 -9.37821 -9.23962 -8.89810 -8.24422 -7.84684 -7.49023 -4.84732 1.46824 2.20661 2.63532 3.08937 3.17944 3.27609 3.80400 3.87068 3.87750 4.32077 4.64140 4.71275 4.78215 4.81169 4.88392 5.06286 5.12917 5.21718 5.35620 5.38776 5.44617 5.49560 5.53788 5.67081 5.73440 5.79583 5.89575 5.92316 5.97353 6.02396 6.03974 6.07718 6.25674 6.28036 6.44271 6.52404 6.63077 6.86696 7.09511 7.19177 7.25855 7.33497 7.46720 7.55287 7.61472 7.79971 7.95591 8.32804 8.55510 9.77547 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009422 B = 0.005812 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.202102 B = 4816.135919 C = 5908.954884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.167 3.833 3 H 0.087 0.913 4 N -1.117 6.117 5 S 2.700 3.300 6 O -0.997 6.997 7 O -0.965 6.965 8 C -0.782 4.782 9 C 0.011 3.989 10 C -0.264 4.264 11 C -0.056 4.056 12 C -0.208 4.208 13 C 0.165 3.835 14 C -0.495 4.495 15 H 0.087 0.913 16 C 0.045 3.955 17 N -0.771 5.771 18 Si 1.060 2.940 19 H -0.268 1.268 20 H -0.270 1.270 21 H -0.269 1.269 22 C -0.130 4.130 23 H 0.095 0.905 24 C -0.119 4.119 25 C -0.156 4.156 26 C 0.060 3.940 27 O -0.381 6.381 28 C 0.064 3.936 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.409 0.591 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.303 0.697 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.904 -1.284 11.053 14.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.059 3.941 3 H 0.105 0.895 4 N -0.874 5.874 5 S 2.797 3.203 6 O -0.987 6.987 7 O -0.955 6.955 8 C -0.877 4.877 9 C -0.009 4.009 10 C -0.285 4.285 11 C -0.075 4.075 12 C -0.228 4.228 13 C 0.160 3.840 14 C -0.522 4.522 15 H 0.105 0.895 16 C -0.180 4.180 17 N -0.391 5.391 18 Si 0.882 3.118 19 H -0.193 1.193 20 H -0.195 1.195 21 H -0.194 1.194 22 C -0.150 4.150 23 H 0.113 0.887 24 C -0.157 4.157 25 C -0.194 4.194 26 C -0.017 4.017 27 O -0.299 6.299 28 C -0.013 4.013 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.243 0.757 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.057 -2.439 10.222 13.242 hybrid contribution -0.572 1.588 0.407 1.736 sum -8.630 -0.851 10.629 13.717 Atomic orbital electron populations 1.22457 0.95754 1.02368 1.02880 1.20488 0.93612 0.96153 0.83879 0.89471 1.55856 1.82087 1.18631 1.30786 1.01122 0.73582 0.73099 0.72459 1.93450 1.56356 1.64540 1.84348 1.93546 1.82661 1.62154 1.57181 1.29845 1.17766 1.05335 1.34726 1.20331 0.97102 0.92186 0.91232 1.20442 0.94568 0.97625 1.15820 1.20827 0.96068 0.94690 0.95887 1.21300 0.99524 0.93300 1.08652 1.16981 0.89657 0.92541 0.84775 1.20853 0.99509 0.91546 1.40311 0.89534 1.27111 0.91343 1.06770 0.92787 1.70444 1.35916 1.15572 1.17213 0.83712 0.77888 0.72644 0.77595 1.19300 1.19482 1.19397 1.22077 1.02894 0.95730 0.94282 0.88713 1.21696 1.01022 0.99434 0.93505 1.22186 1.02442 0.96355 0.98376 1.22549 0.97684 0.93526 0.87900 1.87954 1.74401 1.53796 1.13777 1.22710 0.98505 0.92489 0.87577 0.91663 0.91096 0.92178 0.75660 0.87324 0.88570 0.88662 0.87337 0.88375 0.91082 0.91306 0.90849 0.91080 0.89239 0.93497 0.92744 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 8.82 37.16 0.33 -1.83 16 2 C 0.17 2.40 2.62 -67.92 -0.18 2.22 16 3 H 0.09 1.34 7.89 -51.93 -0.41 0.93 16 4 N -1.12 -18.81 4.61 -4.89 -0.02 -18.83 16 5 S 2.70 57.72 4.87 -107.50 -0.52 57.20 16 6 O -1.00 -21.98 16.46 -57.17 -0.94 -22.93 16 7 O -0.97 -23.86 16.52 -57.17 -0.94 -24.80 16 8 C -0.78 -18.15 5.87 -38.87 -0.23 -18.38 16 9 C 0.01 0.25 9.54 -39.66 -0.38 -0.13 16 10 C -0.26 -5.59 10.05 -39.29 -0.39 -5.99 16 11 C -0.06 -1.21 10.02 -39.66 -0.40 -1.61 16 12 C -0.21 -4.95 8.01 -38.87 -0.31 -5.27 16 13 C 0.17 4.08 5.19 -106.82 -0.55 3.52 16 14 C -0.50 -12.18 7.50 -37.74 -0.28 -12.47 16 15 H 0.09 2.00 5.91 -52.49 -0.31 1.69 16 16 C 0.05 1.09 4.92 -17.34 -0.09 1.01 16 17 N -0.77 -19.60 12.46 55.55 0.69 -18.90 16 18 Si 1.06 20.70 30.00 -169.99 -5.10 15.60 16 19 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 20 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 22 C -0.13 -1.70 2.41 -90.48 -0.22 -1.91 16 23 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 24 C -0.12 -1.27 5.04 -26.55 -0.13 -1.41 16 25 C -0.16 -1.54 6.14 -26.59 -0.16 -1.70 16 26 C 0.06 0.61 6.85 37.20 0.25 0.87 16 27 O -0.38 -5.09 10.76 -35.23 -0.38 -5.47 16 28 C 0.06 0.80 5.60 37.20 0.21 1.00 16 29 H 0.06 0.66 6.37 -51.93 -0.33 0.33 16 30 H 0.07 0.98 7.89 -51.93 -0.41 0.57 16 31 H 0.06 0.65 6.38 -51.93 -0.33 0.32 16 32 H 0.41 6.23 6.86 -34.47 -0.24 5.99 16 33 H 0.11 2.21 7.32 -52.49 -0.38 1.83 16 34 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.10 1.79 8.06 -52.48 -0.42 1.36 16 36 H 0.11 2.61 6.82 -52.49 -0.36 2.26 16 37 H 0.30 7.95 6.88 -40.82 -0.28 7.67 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.64 6.28 -51.93 -0.33 0.32 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.05 0.59 6.31 -51.93 -0.33 0.26 16 45 H 0.09 1.20 6.63 -51.93 -0.34 0.85 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -30.27 362.07 -10.52 -40.80 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -6.23 Total: 13.95 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: -2.54 Total: -42.07 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.67 Total: -37.73 kcal Atomic # 8 Polarization: -50.93 SS G_CDS: -2.27 Total: -53.19 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.10 Total: 15.60 kcal Atomic # 16 Polarization: 57.72 SS G_CDS: -0.52 Total: 57.20 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.27 -10.52 -40.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601388246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.130 kcal (2) G-P(sol) polarization free energy of solvation -30.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds