Wall clock time and date at job start Tue Mar 31 2020 22:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47546 * 2 1 4 4 N 1.46503 * 109.47179 * 240.00040 * 2 1 3 5 5 S 1.65604 * 119.99895 * 97.29351 * 4 2 1 6 6 O 1.42101 * 106.39874 * 312.07658 * 5 4 2 7 7 O 1.42092 * 106.40312 * 179.15537 * 5 4 2 8 8 C 1.76201 * 107.21866 * 65.61164 * 5 4 2 9 9 C 1.37635 * 120.12730 * 245.72586 * 8 5 4 10 10 C 1.38620 * 120.24576 * 179.97438 * 9 8 5 11 11 C 1.38654 * 120.49930 * 0.02562 * 10 9 8 12 12 C 1.37597 * 120.25344 * 359.66977 * 11 10 9 13 13 C 1.40695 * 120.12560 * 65.70550 * 8 5 4 14 14 C 1.41402 * 120.24526 * 0.02562 * 13 8 5 15 15 H 1.08002 * 120.00004 * 330.52132 * 14 13 8 16 16 C 1.39943 * 120.00130 * 150.52851 * 14 13 8 17 17 N 1.30823 * 119.99919 * 335.00942 * 16 14 13 18 18 Si 1.86792 * 120.00064 * 154.73949 * 16 14 13 19 19 H 1.48494 * 109.47632 * 59.99686 * 18 16 14 20 20 H 1.48507 * 109.47061 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47243 * 299.99416 * 18 16 14 22 22 C 1.53007 * 109.47140 * 120.00374 * 2 1 3 23 23 H 1.08996 * 109.51899 * 180.02562 * 22 2 1 24 24 C 1.53179 * 109.51828 * 300.12420 * 22 2 1 25 25 C 1.53180 * 109.03168 * 176.88625 * 24 22 2 26 26 C 1.53090 * 109.16641 * 303.01779 * 25 24 22 27 27 O 1.42908 * 109.41236 * 57.61009 * 26 25 24 28 28 C 1.42913 * 114.15434 * 298.87653 * 27 26 25 29 29 H 1.09001 * 109.46929 * 299.99910 * 1 2 3 30 30 H 1.08995 * 109.47047 * 59.99710 * 1 2 3 31 31 H 1.08996 * 109.47071 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00076 * 277.28801 * 4 2 1 33 33 H 1.07997 * 119.88089 * 359.95292 * 9 8 5 34 34 H 1.07999 * 119.74748 * 180.02562 * 10 9 8 35 35 H 1.08005 * 119.87259 * 179.97438 * 11 10 9 36 36 H 1.07996 * 120.13115 * 180.30001 * 12 11 10 37 37 H 0.97003 * 120.00180 * 353.92671 * 17 16 14 38 38 H 1.09001 * 109.54656 * 296.74896 * 24 22 2 39 39 H 1.08995 * 109.54634 * 57.01793 * 24 22 2 40 40 H 1.09001 * 109.52057 * 62.92695 * 25 24 22 41 41 H 1.09002 * 109.52311 * 183.04888 * 25 24 22 42 42 H 1.08998 * 109.48236 * 177.59202 * 26 25 24 43 43 H 1.09000 * 109.47795 * 297.61836 * 26 25 24 44 44 H 1.09001 * 109.42190 * 301.11312 * 28 27 26 45 45 H 1.08997 * 109.53736 * 181.07808 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 16 2.4660 0.1814 -2.5310 6 8 1.4192 1.1116 -2.7721 7 8 2.9052 -0.7624 -3.4981 8 6 3.8815 1.1305 -2.0833 9 6 3.8079 2.5043 -2.0441 10 6 4.9198 3.2534 -1.6918 11 6 6.1171 2.6297 -1.3757 12 6 6.2120 1.2572 -1.4021 13 6 5.0912 0.4868 -1.7641 14 6 5.1786 -0.9240 -1.8011 15 1 4.3040 -1.5247 -1.5994 16 6 6.3984 -1.5419 -2.0988 17 7 7.3011 -0.9041 -2.7987 18 14 6.7407 -3.2745 -1.4904 19 1 5.7234 -4.2037 -2.0442 20 1 8.0923 -3.6979 -1.9370 21 1 6.6786 -3.2996 -0.0070 22 6 2.0400 -0.7214 1.2492 23 1 3.1300 -0.7214 1.2503 24 6 1.5275 -0.0020 2.5007 25 6 1.9791 -0.7769 3.7425 26 6 1.4679 -2.2170 3.6498 27 8 1.9559 -2.8178 2.4485 28 6 1.5278 -2.1640 1.2519 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 2.0796 -1.6586 -1.2063 33 1 2.8805 3.0007 -2.2892 34 1 4.8529 4.3309 -1.6633 35 1 6.9772 3.2232 -1.1030 36 1 7.1442 0.7733 -1.1509 37 1 7.0929 -0.0394 -3.1858 38 1 1.9351 1.0084 2.5333 39 1 0.4388 0.0433 2.4751 40 1 3.0679 -0.7795 3.7942 41 1 1.5731 -0.3021 4.6358 42 1 1.8223 -2.7846 4.5101 43 1 0.3779 -2.2157 3.6390 44 1 0.4386 -2.1631 1.2092 45 1 1.9253 -2.6926 0.3855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601388246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:42 Heat of formation + Delta-G solvation = -145.700626 kcal Electronic energy + Delta-G solvation = -29253.231173 eV Core-core repulsion = 25360.463454 eV Total energy + Delta-G solvation = -3892.767719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.69585 -39.62334 -38.14961 -37.51861 -36.71414 -35.88953 -34.21746 -32.08418 -31.88135 -31.30604 -29.64829 -27.19229 -25.99184 -25.42771 -23.59926 -23.06911 -22.58730 -20.48488 -20.39746 -20.03931 -18.63969 -17.93184 -17.55300 -16.93696 -16.78074 -16.64502 -16.14536 -15.77398 -15.67887 -15.53117 -15.37781 -15.11154 -14.69347 -14.45932 -14.29010 -14.04232 -13.71273 -13.50972 -13.37042 -13.10150 -13.05054 -12.91737 -12.84828 -12.78528 -12.76088 -12.27939 -12.27037 -12.08685 -12.01718 -11.76459 -11.62843 -11.48676 -11.22831 -11.13471 -11.00524 -10.33832 -10.29443 -10.02957 -9.66591 -9.35830 -6.71664 -0.21909 0.40510 0.84422 1.47842 1.60442 1.75111 2.25883 2.26805 2.55188 2.89611 3.01366 3.30217 3.71084 3.77265 3.80855 3.87934 4.06569 4.13867 4.20576 4.29993 4.31411 4.34158 4.46983 4.50814 4.57327 4.61104 4.77469 4.81084 4.82647 4.95539 4.96680 5.05410 5.06784 5.11626 5.18278 5.27665 5.35045 5.36688 5.46420 5.53429 5.57784 5.64659 5.81872 5.96610 6.13127 6.17674 6.32787 6.51762 6.74155 7.87382 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009422 B = 0.005812 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.202102 B = 4816.135919 C = 5908.954884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.160 3.840 3 H 0.074 0.926 4 N -1.107 6.107 5 S 2.719 3.281 6 O -1.003 7.003 7 O -1.003 7.003 8 C -0.796 4.796 9 C -0.003 4.003 10 C -0.259 4.259 11 C -0.054 4.054 12 C -0.233 4.233 13 C 0.147 3.853 14 C -0.526 4.526 15 H 0.092 0.908 16 C 0.011 3.989 17 N -0.796 5.796 18 Si 1.100 2.900 19 H -0.256 1.256 20 H -0.268 1.268 21 H -0.253 1.253 22 C -0.124 4.124 23 H 0.062 0.938 24 C -0.117 4.117 25 C -0.153 4.153 26 C 0.053 3.947 27 O -0.405 6.405 28 C 0.063 3.937 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.417 0.583 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.096 0.904 37 H 0.286 0.714 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.054 0.946 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.703 -0.993 13.053 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.053 3.947 3 H 0.092 0.908 4 N -0.867 5.867 5 S 2.815 3.185 6 O -0.994 6.994 7 O -0.993 6.993 8 C -0.889 4.889 9 C -0.022 4.022 10 C -0.279 4.279 11 C -0.072 4.072 12 C -0.252 4.252 13 C 0.143 3.857 14 C -0.553 4.553 15 H 0.110 0.890 16 C -0.208 4.208 17 N -0.417 5.417 18 Si 0.916 3.084 19 H -0.180 1.180 20 H -0.193 1.193 21 H -0.177 1.177 22 C -0.144 4.144 23 H 0.080 0.920 24 C -0.155 4.155 25 C -0.191 4.191 26 C -0.023 4.023 27 O -0.324 6.324 28 C -0.014 4.014 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.254 0.746 33 H 0.143 0.857 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.853 -2.122 12.229 15.847 hybrid contribution -0.107 1.665 -0.158 1.676 sum -9.960 -0.457 12.071 15.656 Atomic orbital electron populations 1.22442 0.93454 1.03711 1.03459 1.20751 0.95359 0.95385 0.83202 0.90752 1.55494 1.81640 1.18881 1.30651 1.00426 0.72903 0.72574 0.72629 1.93431 1.56081 1.64971 1.84882 1.93491 1.83220 1.63096 1.59528 1.30182 1.18319 1.06426 1.33998 1.20672 0.98319 0.91953 0.91276 1.20884 0.93749 0.99419 1.13814 1.21198 0.97451 0.94078 0.94487 1.21345 0.99143 0.94513 1.10243 1.17266 0.90487 0.93071 0.84895 1.21049 1.00212 0.91975 1.42019 0.89028 1.28385 0.91089 1.09540 0.91835 1.70554 1.36569 1.15306 1.19253 0.83248 0.78062 0.68938 0.78115 1.18026 1.19257 1.17742 1.21978 1.00951 0.96695 0.94789 0.91984 1.21731 1.02297 0.99002 0.92493 1.22178 1.01411 0.96512 0.98964 1.22788 0.98918 0.93520 0.87052 1.87924 1.75164 1.54524 1.14805 1.22725 0.99682 0.91579 0.87394 0.88851 0.92737 0.90473 0.74628 0.85679 0.85126 0.85624 0.88559 0.90201 0.91355 0.89024 0.92731 0.88506 0.87992 0.91489 0.90461 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.78 8.82 71.98 0.63 -3.15 16 2 C 0.16 4.45 2.62 44.99 0.12 4.56 16 3 H 0.07 2.25 7.89 -2.39 -0.02 2.24 16 4 N -1.11 -37.20 4.61 -169.37 -0.78 -37.98 16 5 S 2.72 117.46 4.87 -56.49 -0.27 117.18 16 6 O -1.00 -43.93 16.46 -128.00 -2.11 -46.04 16 7 O -1.00 -50.82 16.52 -128.00 -2.11 -52.93 16 8 C -0.80 -37.42 5.87 22.73 0.13 -37.29 16 9 C 0.00 -0.11 9.54 22.22 0.21 0.10 16 10 C -0.26 -10.49 10.05 22.46 0.23 -10.26 16 11 C -0.05 -2.27 10.02 22.22 0.22 -2.05 16 12 C -0.23 -11.34 8.01 22.73 0.18 -11.16 16 13 C 0.15 7.48 5.19 -21.29 -0.11 7.37 16 14 C -0.53 -26.73 7.50 23.46 0.18 -26.56 16 15 H 0.09 4.38 5.91 -2.91 -0.02 4.36 16 16 C 0.01 0.54 4.92 85.26 0.42 0.96 16 17 N -0.80 -42.09 12.46 21.83 0.27 -41.82 16 18 Si 1.10 42.27 30.00 68.60 2.06 44.32 16 19 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 20 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 21 H -0.25 -8.99 7.11 99.48 0.71 -8.29 16 22 C -0.12 -3.12 2.41 -10.70 -0.03 -3.14 16 23 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 24 C -0.12 -2.25 5.04 30.71 0.15 -2.09 16 25 C -0.15 -2.67 6.14 30.68 0.19 -2.48 16 26 C 0.05 0.94 6.85 72.01 0.49 1.43 16 27 O -0.40 -10.19 10.76 -148.98 -1.60 -11.79 16 28 C 0.06 1.47 5.60 72.01 0.40 1.87 16 29 H 0.09 1.53 6.37 -2.39 -0.02 1.52 16 30 H 0.05 1.40 7.89 -2.39 -0.02 1.38 16 31 H 0.08 1.43 6.38 -2.39 -0.02 1.42 16 32 H 0.42 12.76 6.86 -96.75 -0.66 12.09 16 33 H 0.13 4.93 7.32 -2.91 -0.02 4.91 16 34 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 35 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 36 H 0.10 4.84 6.82 -2.91 -0.02 4.82 16 37 H 0.29 15.81 6.88 -92.71 -0.64 15.17 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.09 1.34 6.28 -2.39 -0.02 1.33 16 40 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 1.43 6.31 -2.39 -0.02 1.42 16 45 H 0.08 2.09 6.63 -2.39 -0.02 2.08 16 Total: -1.00 -67.01 362.07 -0.64 -67.65 By element: Atomic # 1 Polarization: 42.80 SS G_CDS: 0.48 Total: 43.29 kcal Atomic # 6 Polarization: -85.31 SS G_CDS: 3.43 Total: -81.88 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -0.51 Total: -79.80 kcal Atomic # 8 Polarization: -104.93 SS G_CDS: -5.83 Total: -110.76 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.06 Total: 44.32 kcal Atomic # 16 Polarization: 117.46 SS G_CDS: -0.27 Total: 117.18 kcal Total: -67.01 -0.64 -67.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601388246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.055 kcal (2) G-P(sol) polarization free energy of solvation -67.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds