Wall clock time and date at job start Tue Mar 31 2020 22:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47211 * 2 1 4 4 N 1.46496 * 109.47088 * 120.00000 * 2 1 3 5 5 S 1.65602 * 119.99888 * 262.85098 * 4 2 1 6 6 O 1.42093 * 106.40329 * 311.95295 * 5 4 2 7 7 O 1.42100 * 106.39948 * 179.02680 * 5 4 2 8 8 C 1.76203 * 107.21661 * 65.49286 * 5 4 2 9 9 C 1.37642 * 120.12627 * 244.11875 * 8 5 4 10 10 C 1.38606 * 120.24789 * 179.97438 * 9 8 5 11 11 C 1.38666 * 120.50289 * 0.02782 * 10 9 8 12 12 C 1.37593 * 120.24598 * 359.97438 * 11 10 9 13 13 C 1.40698 * 120.12931 * 64.09717 * 8 5 4 14 14 C 1.41401 * 120.24546 * 0.02562 * 13 8 5 15 15 H 1.08000 * 119.99831 * 330.36971 * 14 13 8 16 16 C 1.39938 * 120.00076 * 150.36192 * 14 13 8 17 17 N 1.30825 * 119.99877 * 344.38340 * 16 14 13 18 18 Si 1.86801 * 120.00023 * 164.38650 * 16 14 13 19 19 H 1.48496 * 109.47075 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47268 * 120.00171 * 18 16 14 21 21 H 1.48500 * 109.46827 * 240.00081 * 18 16 14 22 22 C 1.53002 * 109.46940 * 239.99788 * 2 1 3 23 23 H 1.09008 * 109.52101 * 185.12301 * 22 2 1 24 24 C 1.53182 * 109.52322 * 65.00560 * 22 2 1 25 25 C 1.53176 * 109.03615 * 183.11431 * 24 22 2 26 26 C 1.53094 * 109.16502 * 56.97628 * 25 24 22 27 27 O 1.42898 * 109.41227 * 302.39050 * 26 25 24 28 28 C 1.42905 * 114.10103 * 61.16109 * 27 26 25 29 29 H 1.08998 * 109.47211 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47082 * 300.00242 * 1 2 3 31 31 H 1.09003 * 109.47187 * 60.00158 * 1 2 3 32 32 H 0.96999 * 119.99631 * 82.85346 * 4 2 1 33 33 H 1.07998 * 119.87353 * 359.97438 * 9 8 5 34 34 H 1.08002 * 119.74973 * 180.02562 * 10 9 8 35 35 H 1.07994 * 119.87130 * 179.72254 * 11 10 9 36 36 H 1.07998 * 120.12866 * 179.97438 * 12 11 10 37 37 H 0.97000 * 119.99994 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.53731 * 302.97438 * 24 22 2 39 39 H 1.08997 * 109.54390 * 63.23947 * 24 22 2 40 40 H 1.08999 * 109.51908 * 176.88208 * 25 24 22 41 41 H 1.09001 * 109.51910 * 297.06489 * 25 24 22 42 42 H 1.08998 * 109.47882 * 62.37369 * 26 25 24 43 43 H 1.08997 * 109.47799 * 182.40674 * 26 25 24 44 44 H 1.08993 * 109.48347 * 178.85765 * 28 27 26 45 45 H 1.09005 * 109.47782 * 58.82005 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 16 2.4625 0.1812 2.5322 6 8 3.3089 1.2238 2.0678 7 8 2.8620 -0.7651 3.5141 8 6 1.0092 0.9598 3.1538 9 6 0.9097 2.3326 3.1599 10 6 -0.2326 2.9477 3.6478 11 6 -1.2865 2.1898 4.1353 12 6 -1.2088 0.8160 4.1390 13 6 -0.0541 0.1806 3.6456 14 6 0.0369 -1.2305 3.6445 15 1 0.6266 -1.7329 2.8920 16 6 -0.6368 -1.9758 4.6185 17 7 -1.0914 -1.3868 5.6946 18 14 -0.8870 -3.8119 4.3823 19 1 -0.2837 -4.2317 3.0919 20 1 -0.2363 -4.5475 5.4961 21 1 -2.3405 -4.1159 4.3707 22 6 2.0399 -0.7213 -1.2492 23 1 3.1261 -0.8019 -1.2054 24 6 1.6354 0.0689 -2.4976 25 6 2.0829 -0.7017 -3.7435 26 6 1.4654 -2.1023 -3.7169 27 8 1.8563 -2.7711 -2.5161 28 6 1.4241 -2.1211 -1.3190 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.0814 -1.6585 1.2055 33 1 1.7246 2.9327 2.7830 34 1 -0.3023 4.0254 3.6483 35 1 -2.1699 2.6797 4.5172 36 1 -2.0306 0.2276 4.5196 37 1 -1.5588 -1.9034 6.3695 38 1 0.5527 0.1933 -2.5153 39 1 2.1160 1.0471 -2.4816 40 1 1.7503 -0.1739 -4.6372 41 1 3.1699 -0.7829 -3.7506 42 1 0.3789 -2.0212 -3.7507 43 1 1.8147 -2.6700 -4.5794 44 1 1.7436 -2.7023 -0.4541 45 1 0.3371 -2.0403 -1.3215 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601388248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:51 Heat of formation + Delta-G solvation = -119.770068 kcal Electronic energy + Delta-G solvation = -29064.092207 eV Core-core repulsion = 25172.448921 eV Total energy + Delta-G solvation = -3891.643286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.75036 -37.63779 -36.53518 -36.10288 -34.83202 -33.90634 -33.25877 -30.93085 -30.23510 -29.60684 -28.43115 -25.54681 -25.13648 -24.42012 -21.73172 -21.56419 -21.15071 -19.46931 -18.71128 -17.71966 -17.00810 -16.52203 -16.07594 -15.83788 -15.52106 -15.36705 -14.81814 -14.52769 -14.38210 -14.25195 -13.64230 -13.33498 -13.20146 -13.13014 -12.77794 -12.68658 -12.58572 -12.10655 -11.81950 -11.59890 -11.38574 -11.35858 -11.29482 -11.16790 -11.09871 -11.02938 -11.00321 -10.81704 -10.74804 -10.53227 -10.37854 -10.29897 -9.89712 -9.50958 -9.43691 -9.38815 -8.80640 -8.04053 -7.63047 -7.07605 -4.76906 1.53146 2.32140 2.69787 2.96127 3.00956 3.08203 3.75517 3.81185 3.90277 4.37755 4.66985 4.70688 4.76135 4.77177 4.85531 5.09084 5.22731 5.25698 5.37911 5.47875 5.50751 5.52396 5.59525 5.67688 5.78461 5.81441 5.90320 6.00071 6.03277 6.04406 6.16237 6.21126 6.26052 6.37940 6.54672 6.71225 6.76895 6.90574 7.05741 7.15331 7.28467 7.46342 7.52171 7.64398 7.78031 7.87275 8.25777 8.48387 8.62109 9.87774 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011155 B = 0.004987 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.582763 B = 5613.265836 C = 6726.795414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.162 3.838 3 H 0.091 0.909 4 N -1.118 6.118 5 S 2.699 3.301 6 O -0.999 6.999 7 O -0.965 6.965 8 C -0.773 4.773 9 C -0.002 4.002 10 C -0.250 4.250 11 C -0.075 4.075 12 C -0.159 4.159 13 C 0.192 3.808 14 C -0.448 4.448 15 H 0.088 0.912 16 C 0.083 3.917 17 N -0.772 5.772 18 Si 0.911 3.089 19 H -0.254 1.254 20 H -0.269 1.269 21 H -0.270 1.270 22 C -0.126 4.126 23 H 0.085 0.915 24 C -0.120 4.120 25 C -0.155 4.155 26 C 0.059 3.941 27 O -0.384 6.384 28 C 0.061 3.939 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.409 0.591 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.287 0.713 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.049 0.951 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.443 -0.817 -13.748 13.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.055 3.945 3 H 0.109 0.891 4 N -0.874 5.874 5 S 2.797 3.203 6 O -0.989 6.989 7 O -0.955 6.955 8 C -0.868 4.868 9 C -0.022 4.022 10 C -0.271 4.271 11 C -0.094 4.094 12 C -0.179 4.179 13 C 0.187 3.813 14 C -0.477 4.477 15 H 0.106 0.894 16 C -0.139 4.139 17 N -0.395 5.395 18 Si 0.735 3.265 19 H -0.177 1.177 20 H -0.194 1.194 21 H -0.195 1.195 22 C -0.146 4.146 23 H 0.104 0.896 24 C -0.158 4.158 25 C -0.193 4.193 26 C -0.018 4.018 27 O -0.303 6.303 28 C -0.016 4.016 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.243 0.757 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.136 0.864 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.437 -0.801 -13.186 13.217 hybrid contribution -1.131 -0.623 0.221 1.310 sum -0.694 -1.424 -12.964 13.061 Atomic orbital electron populations 1.22475 0.95228 1.03025 1.03004 1.20566 0.94240 0.96199 0.83537 0.89074 1.55818 1.83945 1.18831 1.28797 1.01116 0.74284 0.72854 0.72081 1.93444 1.65586 1.58191 1.81714 1.93546 1.82249 1.62132 1.57572 1.29857 1.20821 1.03275 1.32835 1.20246 0.95955 0.92571 0.93399 1.20469 0.96744 0.97507 1.12369 1.20875 0.96857 0.94627 0.97035 1.21376 0.98802 0.93074 1.04599 1.16938 0.88088 0.92041 0.84200 1.19843 1.25305 0.91119 1.11392 0.89406 1.25923 0.92399 1.01979 0.93601 1.69804 1.25217 1.39219 1.05254 0.86187 0.78904 0.81054 0.80403 1.17744 1.19355 1.19471 1.22046 1.01923 0.96014 0.94620 0.89616 1.21696 1.01809 0.98952 0.93305 1.22184 1.01860 0.96678 0.98533 1.22556 0.98395 0.92996 0.87825 1.87930 1.78535 1.49957 1.13837 1.22786 0.98755 0.92765 0.87296 0.91736 0.90439 0.92187 0.75676 0.87524 0.88803 0.88906 0.86433 0.90167 0.91054 0.91030 0.91008 0.91098 0.93300 0.89295 0.88731 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 8.78 37.16 0.33 -2.18 16 2 C 0.16 2.34 2.70 -67.93 -0.18 2.15 16 3 H 0.09 1.36 7.48 -51.93 -0.39 0.97 16 4 N -1.12 -18.85 4.51 -4.89 -0.02 -18.87 16 5 S 2.70 57.93 4.94 -107.50 -0.53 57.40 16 6 O -1.00 -22.41 16.29 -57.17 -0.93 -23.34 16 7 O -0.96 -23.86 16.67 -57.17 -0.95 -24.82 16 8 C -0.77 -17.80 5.07 -38.87 -0.20 -17.99 16 9 C 0.00 -0.04 9.53 -39.66 -0.38 -0.42 16 10 C -0.25 -5.32 10.05 -39.29 -0.39 -5.71 16 11 C -0.08 -1.63 10.02 -39.66 -0.40 -2.03 16 12 C -0.16 -3.78 8.66 -38.88 -0.34 -4.12 16 13 C 0.19 4.68 5.16 -106.82 -0.55 4.12 16 14 C -0.45 -10.80 7.61 -37.74 -0.29 -11.09 16 15 H 0.09 1.97 5.75 -52.49 -0.30 1.67 16 16 C 0.08 1.94 5.15 -17.34 -0.09 1.85 16 17 N -0.77 -18.72 11.18 55.55 0.62 -18.10 16 18 Si 0.91 17.60 29.59 -169.99 -5.03 12.57 16 19 H -0.25 -4.75 7.11 56.52 0.40 -4.35 16 20 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 22 C -0.13 -1.53 2.36 -90.48 -0.21 -1.74 16 23 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 24 C -0.12 -1.20 5.13 -26.55 -0.14 -1.34 16 25 C -0.15 -1.38 6.14 -26.59 -0.16 -1.54 16 26 C 0.06 0.57 6.84 37.21 0.25 0.82 16 27 O -0.38 -4.84 10.76 -35.23 -0.38 -5.22 16 28 C 0.06 0.74 5.54 37.20 0.21 0.94 16 29 H 0.06 0.87 6.29 -51.93 -0.33 0.54 16 30 H 0.08 1.30 6.86 -51.93 -0.36 0.95 16 31 H 0.06 0.70 6.51 -51.93 -0.34 0.36 16 32 H 0.41 6.26 7.10 -34.48 -0.24 6.01 16 33 H 0.11 2.19 7.33 -52.49 -0.38 1.80 16 34 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.12 2.84 6.47 -52.49 -0.34 2.50 16 37 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 38 H 0.07 0.67 6.44 -51.93 -0.33 0.34 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 1.16 6.84 -51.93 -0.36 0.81 16 45 H 0.06 0.71 6.21 -51.93 -0.32 0.38 16 LS Contribution 360.56 15.07 5.43 5.43 Total: -1.00 -29.97 360.56 -10.54 -40.52 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -6.21 Total: 12.69 kcal Atomic # 6 Polarization: -35.73 SS G_CDS: -2.54 Total: -38.27 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.60 Total: -36.97 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -2.26 Total: -53.38 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Atomic # 16 Polarization: 57.93 SS G_CDS: -0.53 Total: 57.40 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.97 -10.54 -40.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601388248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.253 kcal (2) G-P(sol) polarization free energy of solvation -29.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds