Wall clock time and date at job start Tue Mar 31 2020 22:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47211 * 2 1 4 4 N 1.46496 * 109.47088 * 120.00000 * 2 1 3 5 5 S 1.65602 * 119.99888 * 262.85098 * 4 2 1 6 6 O 1.42093 * 106.40329 * 311.95295 * 5 4 2 7 7 O 1.42100 * 106.39948 * 179.02680 * 5 4 2 8 8 C 1.76203 * 107.21661 * 65.49286 * 5 4 2 9 9 C 1.37642 * 120.12627 * 244.11875 * 8 5 4 10 10 C 1.38606 * 120.24789 * 179.97438 * 9 8 5 11 11 C 1.38666 * 120.50289 * 0.02782 * 10 9 8 12 12 C 1.37593 * 120.24598 * 359.97438 * 11 10 9 13 13 C 1.40698 * 120.12931 * 64.09717 * 8 5 4 14 14 C 1.41401 * 120.24546 * 0.02562 * 13 8 5 15 15 H 1.08000 * 119.99831 * 330.36971 * 14 13 8 16 16 C 1.39938 * 120.00076 * 150.36192 * 14 13 8 17 17 N 1.30825 * 119.99877 * 344.38340 * 16 14 13 18 18 Si 1.86801 * 120.00023 * 164.38650 * 16 14 13 19 19 H 1.48496 * 109.47075 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47268 * 120.00171 * 18 16 14 21 21 H 1.48500 * 109.46827 * 240.00081 * 18 16 14 22 22 C 1.53002 * 109.46940 * 239.99788 * 2 1 3 23 23 H 1.09008 * 109.52101 * 185.12301 * 22 2 1 24 24 C 1.53182 * 109.52322 * 65.00560 * 22 2 1 25 25 C 1.53176 * 109.03615 * 183.11431 * 24 22 2 26 26 C 1.53094 * 109.16502 * 56.97628 * 25 24 22 27 27 O 1.42898 * 109.41227 * 302.39050 * 26 25 24 28 28 C 1.42905 * 114.10103 * 61.16109 * 27 26 25 29 29 H 1.08998 * 109.47211 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47082 * 300.00242 * 1 2 3 31 31 H 1.09003 * 109.47187 * 60.00158 * 1 2 3 32 32 H 0.96999 * 119.99631 * 82.85346 * 4 2 1 33 33 H 1.07998 * 119.87353 * 359.97438 * 9 8 5 34 34 H 1.08002 * 119.74973 * 180.02562 * 10 9 8 35 35 H 1.07994 * 119.87130 * 179.72254 * 11 10 9 36 36 H 1.07998 * 120.12866 * 179.97438 * 12 11 10 37 37 H 0.97000 * 119.99994 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.53731 * 302.97438 * 24 22 2 39 39 H 1.08997 * 109.54390 * 63.23947 * 24 22 2 40 40 H 1.08999 * 109.51908 * 176.88208 * 25 24 22 41 41 H 1.09001 * 109.51910 * 297.06489 * 25 24 22 42 42 H 1.08998 * 109.47882 * 62.37369 * 26 25 24 43 43 H 1.08997 * 109.47799 * 182.40674 * 26 25 24 44 44 H 1.08993 * 109.48347 * 178.85765 * 28 27 26 45 45 H 1.09005 * 109.47782 * 58.82005 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 16 2.4625 0.1812 2.5322 6 8 3.3089 1.2238 2.0678 7 8 2.8620 -0.7651 3.5141 8 6 1.0092 0.9598 3.1538 9 6 0.9097 2.3326 3.1599 10 6 -0.2326 2.9477 3.6478 11 6 -1.2865 2.1898 4.1353 12 6 -1.2088 0.8160 4.1390 13 6 -0.0541 0.1806 3.6456 14 6 0.0369 -1.2305 3.6445 15 1 0.6266 -1.7329 2.8920 16 6 -0.6368 -1.9758 4.6185 17 7 -1.0914 -1.3868 5.6946 18 14 -0.8870 -3.8119 4.3823 19 1 -0.2837 -4.2317 3.0919 20 1 -0.2363 -4.5475 5.4961 21 1 -2.3405 -4.1159 4.3707 22 6 2.0399 -0.7213 -1.2492 23 1 3.1261 -0.8019 -1.2054 24 6 1.6354 0.0689 -2.4976 25 6 2.0829 -0.7017 -3.7435 26 6 1.4654 -2.1023 -3.7169 27 8 1.8563 -2.7711 -2.5161 28 6 1.4241 -2.1211 -1.3190 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.0814 -1.6585 1.2055 33 1 1.7246 2.9327 2.7830 34 1 -0.3023 4.0254 3.6483 35 1 -2.1699 2.6797 4.5172 36 1 -2.0306 0.2276 4.5196 37 1 -1.5588 -1.9034 6.3695 38 1 0.5527 0.1933 -2.5153 39 1 2.1160 1.0471 -2.4816 40 1 1.7503 -0.1739 -4.6372 41 1 3.1699 -0.7829 -3.7506 42 1 0.3789 -2.0212 -3.7507 43 1 1.8147 -2.6700 -4.5794 44 1 1.7436 -2.7023 -0.4541 45 1 0.3371 -2.0403 -1.3215 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601388248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:50 Heat of formation + Delta-G solvation = -139.123096 kcal Electronic energy + Delta-G solvation = -29064.931417 eV Core-core repulsion = 25172.448921 eV Total energy + Delta-G solvation = -3892.482496 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.67744 -39.37098 -38.08016 -37.48820 -36.65995 -35.64327 -34.18735 -32.10655 -31.87328 -31.35021 -29.54778 -27.31217 -25.98978 -25.40761 -23.40780 -22.95845 -22.51328 -20.46737 -20.28143 -19.47777 -18.59234 -17.96201 -17.24085 -17.12050 -16.91673 -16.73599 -16.04012 -15.91472 -15.67916 -15.39083 -15.06489 -14.93107 -14.56050 -14.45284 -14.32673 -13.72437 -13.68293 -13.49622 -13.30991 -13.02424 -12.97711 -12.86706 -12.82009 -12.78759 -12.72941 -12.50590 -12.24914 -12.10797 -12.03244 -11.73774 -11.60849 -11.44442 -11.19372 -11.15547 -11.09907 -10.29715 -10.24238 -9.79049 -9.40648 -8.80509 -6.57337 -0.15203 0.56077 0.98872 1.37656 1.49549 1.52319 2.16108 2.34280 2.64484 2.97256 3.02127 3.48423 3.75105 3.78862 3.83509 3.95389 4.08871 4.18825 4.33872 4.35001 4.39726 4.50750 4.51849 4.53686 4.59765 4.73719 4.81861 4.85653 4.98723 5.00446 5.00958 5.06416 5.14120 5.15253 5.21039 5.31049 5.37552 5.44199 5.54362 5.58759 5.73379 5.82802 6.02458 6.11204 6.22108 6.31676 6.49646 6.70612 6.85737 8.18091 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011155 B = 0.004987 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.582763 B = 5613.265836 C = 6726.795414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.159 3.841 3 H 0.086 0.914 4 N -1.107 6.107 5 S 2.716 3.284 6 O -1.011 7.011 7 O -1.002 7.002 8 C -0.784 4.784 9 C -0.015 4.015 10 C -0.249 4.249 11 C -0.074 4.074 12 C -0.184 4.184 13 C 0.174 3.826 14 C -0.475 4.475 15 H 0.095 0.905 16 C 0.042 3.958 17 N -0.807 5.807 18 Si 0.969 3.031 19 H -0.245 1.245 20 H -0.272 1.272 21 H -0.257 1.257 22 C -0.118 4.118 23 H 0.077 0.923 24 C -0.120 4.120 25 C -0.150 4.150 26 C 0.051 3.949 27 O -0.403 6.403 28 C 0.060 3.940 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.417 0.583 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.294 0.706 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.104 0.896 44 H 0.087 0.913 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.023 -0.737 -15.802 15.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.052 3.948 3 H 0.104 0.896 4 N -0.867 5.867 5 S 2.813 3.187 6 O -1.001 7.001 7 O -0.993 6.993 8 C -0.879 4.879 9 C -0.034 4.034 10 C -0.269 4.269 11 C -0.093 4.093 12 C -0.204 4.204 13 C 0.169 3.831 14 C -0.503 4.503 15 H 0.112 0.888 16 C -0.176 4.176 17 N -0.431 5.431 18 Si 0.789 3.211 19 H -0.167 1.167 20 H -0.197 1.197 21 H -0.181 1.181 22 C -0.139 4.139 23 H 0.095 0.905 24 C -0.158 4.158 25 C -0.187 4.187 26 C -0.025 4.025 27 O -0.322 6.322 28 C -0.017 4.017 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.253 0.747 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.122 0.878 44 H 0.105 0.895 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.151 -0.701 -15.245 15.262 hybrid contribution -0.928 -0.529 0.795 1.332 sum -1.080 -1.231 -14.450 14.542 Atomic orbital electron populations 1.22429 0.94692 1.03303 1.02857 1.20786 0.94636 0.96042 0.83329 0.89592 1.55455 1.83827 1.19111 1.28267 1.00424 0.73756 0.72354 0.72185 1.93419 1.65949 1.58812 1.81918 1.93489 1.82941 1.63063 1.59761 1.30075 1.20863 1.03962 1.32965 1.20545 0.96869 0.92471 0.93562 1.20847 0.95993 0.99148 1.10962 1.21206 0.98009 0.94005 0.96066 1.21425 0.98741 0.94126 1.06109 1.17185 0.88602 0.92641 0.84662 1.20119 1.26455 0.91514 1.12195 0.88753 1.26746 0.91789 1.06031 0.93048 1.69843 1.26209 1.40959 1.06077 0.85329 0.79465 0.75852 0.80446 1.16736 1.19665 1.18075 1.21968 1.01298 0.96249 0.94356 0.90476 1.21738 1.02523 0.98932 0.92612 1.22161 1.01481 0.96321 0.98773 1.22803 0.99195 0.93446 0.87097 1.87907 1.78933 1.50749 1.14658 1.22759 0.99079 0.92478 0.87365 0.91276 0.93416 0.89418 0.74669 0.86242 0.85683 0.86191 0.87556 0.89490 0.90037 0.90594 0.88687 0.91691 0.92299 0.87765 0.89494 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.70 8.78 71.98 0.63 -4.06 16 2 C 0.16 4.44 2.70 44.99 0.12 4.56 16 3 H 0.09 2.50 7.48 -2.39 -0.02 2.49 16 4 N -1.11 -37.31 4.51 -169.40 -0.76 -38.07 16 5 S 2.72 117.89 4.94 -56.49 -0.28 117.61 16 6 O -1.01 -45.34 16.29 -128.00 -2.09 -47.43 16 7 O -1.00 -50.69 16.67 -128.00 -2.13 -52.82 16 8 C -0.78 -36.48 5.07 22.73 0.12 -36.36 16 9 C -0.01 -0.64 9.53 22.22 0.21 -0.43 16 10 C -0.25 -10.21 10.05 22.46 0.23 -9.99 16 11 C -0.07 -3.17 10.02 22.22 0.22 -2.94 16 12 C -0.18 -8.91 8.66 22.73 0.20 -8.71 16 13 C 0.17 8.61 5.16 -21.29 -0.11 8.50 16 14 C -0.47 -23.31 7.61 23.46 0.18 -23.13 16 15 H 0.09 4.31 5.75 -2.91 -0.02 4.29 16 16 C 0.04 2.01 5.15 85.25 0.44 2.45 16 17 N -0.81 -39.99 11.18 21.82 0.24 -39.74 16 18 Si 0.97 35.98 29.59 68.60 2.03 38.00 16 19 H -0.24 -8.58 7.11 99.48 0.71 -7.87 16 20 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 21 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 22 C -0.12 -2.70 2.36 -10.70 -0.03 -2.73 16 23 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 24 C -0.12 -2.12 5.13 30.71 0.16 -1.96 16 25 C -0.15 -2.24 6.14 30.68 0.19 -2.06 16 26 C 0.05 0.84 6.84 72.01 0.49 1.33 16 27 O -0.40 -9.49 10.76 -148.98 -1.60 -11.09 16 28 C 0.06 1.37 5.54 72.01 0.40 1.77 16 29 H 0.07 1.78 6.29 -2.39 -0.02 1.76 16 30 H 0.05 1.59 6.86 -2.39 -0.02 1.58 16 31 H 0.09 1.84 6.51 -2.39 -0.02 1.82 16 32 H 0.42 12.80 7.10 -96.74 -0.69 12.11 16 33 H 0.12 4.80 7.33 -2.91 -0.02 4.78 16 34 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 35 H 0.12 4.36 8.06 -2.91 -0.02 4.33 16 36 H 0.11 5.29 6.47 -2.91 -0.02 5.27 16 37 H 0.29 13.09 8.30 -92.71 -0.77 12.32 16 38 H 0.08 1.28 6.44 -2.39 -0.02 1.26 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.09 2.08 6.84 -2.39 -0.02 2.06 16 45 H 0.07 1.45 6.21 -2.38 -0.01 1.43 16 Total: -1.00 -64.80 360.56 -0.81 -65.61 By element: Atomic # 1 Polarization: 41.35 SS G_CDS: 0.33 Total: 41.68 kcal Atomic # 6 Polarization: -77.21 SS G_CDS: 3.45 Total: -73.76 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -0.52 Total: -77.81 kcal Atomic # 8 Polarization: -105.52 SS G_CDS: -5.82 Total: -111.34 kcal Atomic # 14 Polarization: 35.98 SS G_CDS: 2.03 Total: 38.00 kcal Atomic # 16 Polarization: 117.89 SS G_CDS: -0.28 Total: 117.61 kcal Total: -64.80 -0.81 -65.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601388248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.514 kcal (2) G-P(sol) polarization free energy of solvation -64.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds