Wall clock time and date at job start Tue Mar 31 2020 23:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00286 * 2 1 4 4 C 1.52991 * 109.47628 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47468 * 175.30100 * 4 3 2 6 6 N 1.46506 * 112.84943 * 300.04732 * 5 4 3 7 7 S 1.65598 * 119.99880 * 295.56619 * 6 5 4 8 8 O 1.42096 * 106.40489 * 47.38611 * 7 6 5 9 9 O 1.42097 * 106.40211 * 180.30968 * 7 6 5 10 10 C 1.76204 * 107.21613 * 293.84869 * 7 6 5 11 11 C 1.37630 * 120.12806 * 115.34713 * 10 7 6 12 12 C 1.38613 * 120.24942 * 179.72286 * 11 10 7 13 13 C 1.38652 * 120.50033 * 0.55027 * 12 11 10 14 14 C 1.37600 * 120.24785 * 359.72874 * 13 12 11 15 15 C 1.40700 * 120.12525 * 295.61782 * 10 7 6 16 16 C 1.41393 * 120.24612 * 359.97438 * 15 10 7 17 17 H 1.08000 * 120.00151 * 30.30662 * 16 15 10 18 18 C 1.39948 * 119.99616 * 210.31568 * 16 15 10 19 19 N 1.30817 * 120.00404 * 9.47856 * 18 16 15 20 20 Si 1.86804 * 119.99818 * 189.48195 * 18 16 15 21 21 H 1.48499 * 109.47123 * 89.99673 * 20 18 16 22 22 H 1.48489 * 109.47295 * 209.99858 * 20 18 16 23 23 H 1.48503 * 109.47172 * 330.00316 * 20 18 16 24 24 C 1.53777 * 113.69302 * 71.31511 * 5 4 3 25 25 C 1.53778 * 87.08275 * 139.99382 * 24 5 4 26 26 C 1.53779 * 87.08137 * 334.56997 * 25 24 5 27 27 H 1.08996 * 109.47244 * 60.00017 * 1 2 3 28 28 H 1.08999 * 109.47230 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47518 * 300.00177 * 1 2 3 30 30 H 1.09003 * 109.47099 * 59.99683 * 3 2 1 31 31 H 1.09004 * 109.46595 * 300.00191 * 3 2 1 32 32 H 1.09005 * 109.47165 * 55.30099 * 4 3 2 33 33 H 1.09006 * 109.47425 * 295.30252 * 4 3 2 34 34 H 0.96995 * 119.99718 * 115.28309 * 6 5 4 35 35 H 1.08005 * 119.88000 * 359.97438 * 11 10 7 36 36 H 1.08006 * 119.75028 * 180.26055 * 12 11 10 37 37 H 1.08000 * 119.88232 * 179.74745 * 13 12 11 38 38 H 1.07998 * 120.12739 * 179.97438 * 14 13 12 39 39 H 0.96995 * 120.00094 * 179.97438 * 19 18 16 40 40 H 1.09000 * 113.61451 * 254.54649 * 24 5 4 41 41 H 1.09007 * 113.61045 * 25.44655 * 24 5 4 42 42 H 1.09000 * 113.61307 * 220.02471 * 25 24 5 43 43 H 1.08994 * 113.61322 * 89.12020 * 25 24 5 44 44 H 1.09003 * 113.61355 * 270.88623 * 26 25 24 45 45 H 1.08994 * 113.69237 * 139.99331 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1574 2.5775 -0.1175 6 7 3.7640 3.2740 -1.3449 7 16 4.2178 2.6729 -2.8197 8 8 3.9172 1.2843 -2.7968 9 8 3.6956 3.5652 -3.7946 10 6 5.9724 2.8006 -2.9175 11 6 6.7447 1.6639 -2.9927 12 6 8.1249 1.7616 -3.0754 13 6 8.7440 3.0022 -3.0720 14 6 7.9922 4.1518 -2.9918 15 6 6.5898 4.0650 -2.9132 16 6 5.8069 5.2395 -2.8311 17 1 4.8643 5.2245 -2.3042 18 6 6.2536 6.4215 -3.4326 19 7 7.2951 6.3998 -4.2239 20 14 5.3625 8.0305 -3.1057 21 1 5.9639 8.6979 -1.9233 22 1 5.4884 8.9158 -4.2911 23 1 3.9269 7.7566 -2.8424 24 6 4.0045 3.4323 1.1517 25 6 5.4423 3.9179 0.9030 26 6 5.6725 2.6000 0.1447 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8518 0.5727 -0.8441 33 1 3.8626 0.7183 0.9300 34 1 3.2342 4.0849 -1.2938 35 1 6.2733 0.6921 -2.9913 36 1 8.7229 0.8644 -3.1384 37 1 9.8204 3.0665 -3.1328 38 1 8.4765 5.1171 -2.9889 39 1 7.6044 7.2190 -4.6411 40 1 3.2559 4.2193 1.0606 41 1 3.8936 2.8446 2.0630 42 1 6.0362 4.0077 1.8125 43 1 5.5008 4.8024 0.2689 44 1 6.0175 1.7848 0.7808 45 1 6.2705 2.7136 -0.7594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601407390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:36 Heat of formation + Delta-G solvation = -84.318417 kcal Electronic energy + Delta-G solvation = -29518.808007 eV Core-core repulsion = 25628.702021 eV Total energy + Delta-G solvation = -3890.105987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.54551 -37.69091 -37.43744 -36.19363 -34.83262 -33.90196 -32.40138 -30.88840 -30.22225 -29.57834 -26.61387 -25.71729 -25.38590 -24.11569 -21.65190 -21.43090 -21.13358 -19.42843 -18.29217 -17.71396 -16.82076 -16.47201 -16.06095 -15.82437 -15.48595 -15.40065 -14.84249 -14.60029 -14.32999 -14.21513 -13.42989 -13.35703 -13.25650 -13.04153 -12.76376 -12.37618 -12.26174 -11.83764 -11.61227 -11.53507 -11.47455 -11.31865 -11.19799 -11.06032 -11.05267 -10.97015 -10.81154 -10.70953 -10.52716 -10.47434 -10.29259 -9.91449 -9.71631 -9.47344 -9.47145 -9.35665 -8.74301 -7.97310 -7.59603 -7.02316 -4.77575 1.53242 2.32131 2.71637 2.95583 2.99670 3.09493 3.76138 3.85665 3.86282 4.40847 4.63793 4.76243 4.91308 5.15127 5.17176 5.23397 5.26175 5.31662 5.41692 5.48365 5.57686 5.64717 5.65525 5.82340 5.87551 5.98352 6.04038 6.06847 6.19209 6.23530 6.33629 6.39186 6.52131 6.58067 6.69014 6.77010 6.85694 6.94224 7.07203 7.29202 7.31604 7.47910 7.55248 7.66989 7.79780 7.88145 8.27214 8.49756 8.63146 9.90681 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012699 B = 0.005152 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.400729 B = 5433.113325 C = 6034.200166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.071 3.929 4 C -0.134 4.134 5 C 0.166 3.834 6 N -1.101 6.101 7 S 2.698 3.302 8 O -0.988 6.988 9 O -0.967 6.967 10 C -0.769 4.769 11 C -0.003 4.003 12 C -0.247 4.247 13 C -0.077 4.077 14 C -0.156 4.156 15 C 0.190 3.810 16 C -0.448 4.448 17 H 0.086 0.914 18 C 0.081 3.919 19 N -0.779 5.779 20 Si 0.913 3.087 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.255 1.255 24 C -0.135 4.135 25 C -0.134 4.134 26 C -0.166 4.166 27 H 0.039 0.961 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.412 0.588 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.124 0.876 39 H 0.287 0.713 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.524 -2.648 10.018 11.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.005 4.005 4 C -0.173 4.173 5 C 0.076 3.924 6 N -0.856 5.856 7 S 2.796 3.204 8 O -0.979 6.979 9 O -0.957 6.957 10 C -0.864 4.864 11 C -0.023 4.023 12 C -0.267 4.267 13 C -0.096 4.096 14 C -0.176 4.176 15 C 0.185 3.815 16 C -0.477 4.477 17 H 0.104 0.896 18 C -0.140 4.140 19 N -0.403 5.403 20 Si 0.737 3.263 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.179 1.179 24 C -0.174 4.174 25 C -0.171 4.171 26 C -0.205 4.205 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.126 0.874 33 H 0.095 0.905 34 H 0.245 0.755 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.142 0.858 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.793 -3.150 9.204 11.322 hybrid contribution 0.038 1.564 0.221 1.580 sum -5.755 -1.587 9.425 11.157 Atomic orbital electron populations 1.22697 0.81766 1.02355 0.99699 1.87882 1.19079 1.28584 1.95355 1.22407 0.94360 0.84094 0.99670 1.22112 0.93278 0.96928 1.05021 1.20829 0.95423 0.90868 0.85265 1.55472 1.69113 1.39616 1.21403 1.01188 0.75070 0.72487 0.71668 1.93443 1.84937 1.33243 1.86256 1.93545 1.79737 1.65810 1.56609 1.29856 1.22091 0.99741 1.34677 1.20243 0.93814 0.95635 0.92625 1.20493 0.94177 0.96277 1.15749 1.20908 0.97783 0.93412 0.97467 1.21501 0.93953 0.97309 1.04813 1.16961 0.92210 0.89433 0.82855 1.19805 1.04961 0.93742 1.29178 0.89645 1.25907 0.94337 1.01225 0.92493 1.69761 1.20543 1.30457 1.19494 0.86194 0.81149 0.79930 0.79060 1.18989 1.19798 1.17871 1.23216 0.98380 0.99171 0.96622 1.22767 0.95485 0.98639 1.00204 1.23663 0.95422 0.98020 1.03361 0.94190 0.89940 0.94501 0.93885 0.93348 0.87416 0.90540 0.75456 0.87372 0.88766 0.88896 0.85831 0.90199 0.91219 0.89441 0.91882 0.88995 0.89633 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.39 -5.94 10.70 -35.23 -0.38 -6.31 16 3 C 0.07 1.03 5.73 37.15 0.21 1.24 16 4 C -0.13 -2.03 4.67 -26.74 -0.12 -2.15 16 5 C 0.17 2.47 0.81 -131.01 -0.11 2.37 16 6 N -1.10 -18.71 4.07 1.19 0.00 -18.70 16 7 S 2.70 57.88 4.94 -107.50 -0.53 57.35 16 8 O -0.99 -21.84 14.11 -57.17 -0.81 -22.64 16 9 O -0.97 -23.97 16.66 -57.17 -0.95 -24.92 16 10 C -0.77 -17.57 3.62 -38.87 -0.14 -17.71 16 11 C 0.00 -0.07 8.93 -39.66 -0.35 -0.43 16 12 C -0.25 -5.20 10.05 -39.29 -0.39 -5.59 16 13 C -0.08 -1.66 10.02 -39.66 -0.40 -2.06 16 14 C -0.16 -3.71 8.65 -38.87 -0.34 -4.04 16 15 C 0.19 4.60 5.07 -106.82 -0.54 4.06 16 16 C -0.45 -10.76 7.61 -37.74 -0.29 -11.05 16 17 H 0.09 1.91 5.77 -52.49 -0.30 1.60 16 18 C 0.08 1.90 5.27 -17.34 -0.09 1.81 16 19 N -0.78 -18.80 10.88 55.55 0.60 -18.20 16 20 Si 0.91 17.64 29.57 -169.99 -5.03 12.62 16 21 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 22 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 23 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16 24 C -0.14 -1.63 7.03 -25.92 -0.18 -1.81 16 25 C -0.13 -1.84 7.99 -25.92 -0.21 -2.04 16 26 C -0.17 -2.57 7.25 -25.92 -0.19 -2.75 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.04 0.52 7.95 -51.93 -0.41 0.11 16 31 H 0.05 0.73 7.64 -51.93 -0.40 0.34 16 32 H 0.11 1.93 5.81 -51.93 -0.30 1.63 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.41 6.23 8.47 -34.47 -0.29 5.94 16 35 H 0.11 2.21 7.33 -52.48 -0.38 1.83 16 36 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 37 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 38 H 0.12 2.99 6.30 -52.49 -0.33 2.66 16 39 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 40 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 41 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.09 1.16 8.10 -51.93 -0.42 0.74 16 45 H 0.10 1.92 4.15 -51.93 -0.22 1.71 16 LS Contribution 366.93 15.07 5.53 5.53 Total: -1.00 -29.63 366.93 -10.00 -39.63 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -6.41 Total: 14.36 kcal Atomic # 6 Polarization: -36.67 SS G_CDS: -2.03 Total: -38.70 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.61 Total: -36.90 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -2.14 Total: -53.88 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.62 kcal Atomic # 16 Polarization: 57.88 SS G_CDS: -0.53 Total: 57.35 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.63 -10.00 -39.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601407390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.693 kcal (2) G-P(sol) polarization free energy of solvation -29.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds