Wall clock time and date at job start Tue Mar 31 2020 22:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 114.00099 * 2 1 4 4 H 1.08998 * 109.47359 * 15.99799 * 3 2 1 5 5 C 1.52994 * 109.47276 * 255.99358 * 3 2 1 6 6 H 1.08998 * 109.47467 * 179.24259 * 5 3 2 7 7 C 1.52995 * 109.47222 * 59.23921 * 5 3 2 8 8 N 1.46502 * 109.47018 * 299.24123 * 5 3 2 9 9 S 1.65605 * 120.00037 * 215.47199 * 8 5 3 10 10 O 1.42092 * 106.40132 * 311.95572 * 9 8 5 11 11 O 1.42107 * 106.40236 * 179.03713 * 9 8 5 12 12 C 1.76202 * 107.21758 * 65.50088 * 9 8 5 13 13 C 1.37638 * 120.12190 * 245.85314 * 12 9 8 14 14 C 1.38620 * 120.24461 * 179.97438 * 13 12 9 15 15 C 1.38655 * 120.50156 * 359.97438 * 14 13 12 16 16 C 1.37598 * 120.24742 * 0.02562 * 15 14 13 17 17 C 1.40696 * 120.13073 * 65.84788 * 12 9 8 18 18 C 1.41395 * 120.24358 * 0.02932 * 17 12 9 19 19 H 1.08005 * 120.00075 * 327.14647 * 18 17 12 20 20 C 1.39940 * 120.00358 * 147.15349 * 18 17 12 21 21 N 1.30828 * 119.99817 * 348.82639 * 20 18 17 22 22 Si 1.86801 * 120.00462 * 168.82886 * 20 18 17 23 23 H 1.48506 * 109.46880 * 59.99802 * 22 20 18 24 24 H 1.48500 * 109.47379 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46996 * 300.00256 * 22 20 18 26 26 C 1.52999 * 109.47196 * 135.99370 * 3 2 1 27 27 C 1.53003 * 117.50109 * 8.74533 * 26 3 2 28 28 C 1.53005 * 117.49864 * 300.08591 * 26 3 2 29 29 H 1.08993 * 109.46667 * 64.95857 * 1 2 3 30 30 H 1.09000 * 109.46985 * 184.96275 * 1 2 3 31 31 H 1.08998 * 109.46940 * 304.96314 * 1 2 3 32 32 H 1.08998 * 109.47501 * 58.25501 * 7 5 3 33 33 H 1.09005 * 109.47346 * 178.25747 * 7 5 3 34 34 H 1.09004 * 109.47158 * 298.25154 * 7 5 3 35 35 H 0.97001 * 120.00328 * 35.47267 * 8 5 3 36 36 H 1.07995 * 119.87944 * 359.97438 * 13 12 9 37 37 H 1.07996 * 119.74759 * 180.02562 * 14 13 12 38 38 H 1.08000 * 119.87366 * 180.02562 * 15 14 13 39 39 H 1.08008 * 120.12261 * 179.71565 * 16 15 14 40 40 H 0.97003 * 119.99964 * 179.97438 * 21 20 18 41 41 H 1.08996 * 115.55431 * 154.41703 * 26 3 2 42 42 H 1.09003 * 117.49365 * 0.02562 * 27 26 3 43 43 H 1.08994 * 117.50131 * 145.02270 * 27 26 3 44 44 H 1.08999 * 117.49630 * 214.97584 * 28 26 3 45 45 H 1.08999 * 117.49605 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2557 2.0391 0.2832 5 6 2.5367 1.6293 -1.3995 6 1 2.9679 2.6303 -1.4029 7 6 1.3849 1.5668 -2.4047 8 7 3.5639 0.6538 -1.7728 9 16 4.8666 1.1285 -2.6785 10 8 4.3464 1.8807 -3.7660 11 8 5.6784 -0.0253 -2.8493 12 6 5.8019 2.2540 -1.6970 13 6 5.9105 3.5734 -2.0736 14 6 6.6453 4.4611 -1.3031 15 6 7.2778 4.0323 -0.1462 16 6 7.1827 2.7179 0.2494 17 6 6.4403 1.8075 -0.5255 18 6 6.3360 0.4542 -0.1291 19 1 5.4339 -0.1016 -0.3378 20 6 7.4017 -0.1649 0.5337 21 7 8.5667 0.4272 0.5947 22 14 7.1609 -1.8368 1.3314 23 1 6.7584 -2.8247 0.2983 24 1 8.4323 -2.2713 1.9639 25 1 6.1003 -1.7431 2.3666 26 6 3.1655 1.3493 1.0021 27 6 3.6094 0.0251 1.6271 28 6 2.8418 1.0491 2.4671 29 1 -0.3632 0.4350 -0.9310 30 1 -0.3633 -1.0238 0.0889 31 1 -0.3633 0.5889 0.8422 32 1 0.6066 2.2706 -2.1097 33 1 1.7538 1.8278 -3.3967 34 1 0.9738 0.5575 -2.4240 35 1 3.4812 -0.2702 -1.4894 36 1 5.4216 3.9183 -2.9726 37 1 6.7249 5.4947 -1.6058 38 1 7.8473 4.7327 0.4467 39 1 7.6801 2.3850 1.1485 40 1 9.3053 -0.0018 1.0545 41 1 3.9359 2.0932 0.7993 42 1 3.0786 -0.8773 1.3240 43 1 4.6716 -0.1019 1.8357 44 1 3.3995 1.5952 3.2279 45 1 1.8057 0.8207 2.7169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601432492.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:05 Heat of formation + Delta-G solvation = -98.280083 kcal Electronic energy + Delta-G solvation = -29976.267593 eV Core-core repulsion = 26085.556183 eV Total energy + Delta-G solvation = -3890.711410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.27117 -39.31531 -37.97886 -36.75050 -36.58697 -36.21611 -35.56353 -31.98110 -31.35771 -30.86660 -28.74182 -27.28584 -26.49399 -23.39313 -23.14437 -22.88202 -22.50363 -21.20245 -20.24306 -19.41083 -18.54484 -18.03679 -17.56334 -17.05159 -16.87616 -16.51714 -16.05378 -15.98970 -15.43013 -15.38719 -15.00621 -14.91879 -14.41607 -14.20101 -13.92235 -13.72765 -13.58030 -13.32963 -13.20378 -12.95140 -12.86533 -12.80520 -12.76415 -12.56436 -12.47992 -12.36513 -12.17399 -12.13723 -11.94478 -11.84588 -11.59745 -11.22690 -11.13001 -10.98988 -10.69965 -10.43083 -9.98665 -9.78238 -9.33135 -8.74134 -6.50287 -0.08015 0.58133 1.01713 1.36959 1.46074 1.52199 2.17761 2.39365 2.69978 2.87054 3.08015 3.23457 3.53468 3.73146 3.92292 3.99153 4.19365 4.30504 4.36481 4.37992 4.49705 4.53060 4.54074 4.62910 4.69938 4.73889 4.76231 4.89262 4.93687 4.98499 5.02688 5.04778 5.20010 5.30278 5.32170 5.37813 5.45925 5.50147 5.57139 5.58508 5.75937 5.88788 6.04558 6.16884 6.30226 6.47958 6.55349 6.77803 6.89421 8.23949 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009608 B = 0.007145 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.607639 B = 3917.770178 C = 5061.808259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.387 6.387 3 C 0.127 3.873 4 H 0.099 0.901 5 C 0.138 3.862 6 H 0.083 0.917 7 C -0.168 4.168 8 N -1.093 6.093 9 S 2.714 3.286 10 O -1.010 7.010 11 O -1.005 7.005 12 C -0.786 4.786 13 C -0.017 4.017 14 C -0.248 4.248 15 C -0.077 4.077 16 C -0.179 4.179 17 C 0.176 3.824 18 C -0.456 4.456 19 H 0.098 0.902 20 C 0.045 3.955 21 N -0.815 5.815 22 Si 0.951 3.049 23 H -0.265 1.265 24 H -0.271 1.271 25 H -0.234 1.234 26 C -0.156 4.156 27 C -0.171 4.171 28 C -0.164 4.164 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.419 0.581 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.291 0.709 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.551 1.052 4.347 15.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.306 6.306 3 C 0.068 3.932 4 H 0.117 0.883 5 C 0.031 3.969 6 H 0.101 0.899 7 C -0.227 4.227 8 N -0.853 5.853 9 S 2.811 3.189 10 O -1.000 7.000 11 O -0.995 6.995 12 C -0.880 4.880 13 C -0.037 4.037 14 C -0.268 4.268 15 C -0.095 4.095 16 C -0.199 4.199 17 C 0.172 3.828 18 C -0.484 4.484 19 H 0.116 0.884 20 C -0.172 4.172 21 N -0.440 5.440 22 Si 0.772 3.228 23 H -0.190 1.190 24 H -0.196 1.196 25 H -0.157 1.157 26 C -0.174 4.174 27 C -0.208 4.208 28 C -0.201 4.201 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.255 0.745 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.097 0.903 44 H 0.106 0.894 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.026 0.738 3.498 14.474 hybrid contribution 0.818 -0.357 0.867 1.244 sum -13.208 0.382 4.365 13.915 Atomic orbital electron populations 1.23100 0.80008 1.03496 1.01075 1.87906 1.20810 1.27121 1.94756 1.21754 0.93987 0.85873 0.91610 0.88312 1.21282 0.88971 0.91447 0.95215 0.89940 1.22341 0.97923 1.03484 0.98942 1.55176 1.37235 1.19373 1.73534 1.00509 0.72467 0.72804 0.73162 1.93417 1.80236 1.73874 1.52473 1.93486 1.68811 1.50808 1.86408 1.30187 1.30780 1.11255 1.15810 1.20561 0.94539 0.91705 0.96861 1.20843 1.07177 0.99505 0.99311 1.21204 0.96617 0.95625 0.96081 1.21440 1.04335 0.92902 1.01220 1.17170 0.86029 0.92916 0.86700 1.19997 1.01972 0.95283 1.31189 0.88400 1.26605 0.93872 1.03042 0.93718 1.69826 1.01920 1.40136 1.32073 0.85710 0.79668 0.77633 0.79791 1.18993 1.19563 1.15665 1.22334 1.00102 1.01080 0.93933 1.22866 1.00017 0.93961 1.03926 1.22914 1.01306 1.03143 0.92722 0.92779 0.89121 0.92959 0.89327 0.92872 0.90968 0.74522 0.86232 0.85770 0.86360 0.87639 0.89841 0.88815 0.88173 0.90265 0.89425 0.87675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.38 113.37 1.18 1.47 16 2 O -0.39 -8.91 7.77 -148.98 -1.16 -10.07 16 3 C 0.13 3.08 2.42 30.59 0.07 3.15 16 4 H 0.10 1.85 7.60 -2.39 -0.02 1.83 16 5 C 0.14 3.90 2.61 44.99 0.12 4.02 16 6 H 0.08 2.45 7.88 -2.39 -0.02 2.43 16 7 C -0.17 -3.95 8.41 71.98 0.61 -3.34 16 8 N -1.09 -37.92 4.19 -169.40 -0.71 -38.63 16 9 S 2.71 119.21 4.89 -56.49 -0.28 118.94 16 10 O -1.01 -45.35 16.29 -128.00 -2.09 -47.44 16 11 O -1.00 -51.82 16.58 -128.00 -2.12 -53.94 16 12 C -0.79 -36.74 5.84 22.73 0.13 -36.61 16 13 C -0.02 -0.74 9.54 22.22 0.21 -0.53 16 14 C -0.25 -10.21 10.05 22.46 0.23 -9.98 16 15 C -0.08 -3.28 10.02 22.22 0.22 -3.06 16 16 C -0.18 -8.66 8.64 22.73 0.20 -8.47 16 17 C 0.18 8.72 5.26 -21.29 -0.11 8.61 16 18 C -0.46 -22.23 6.24 23.46 0.15 -22.08 16 19 H 0.10 4.51 5.14 -2.91 -0.01 4.50 16 20 C 0.04 2.16 5.22 85.25 0.45 2.61 16 21 N -0.81 -41.04 11.15 21.83 0.24 -40.79 16 22 Si 0.95 37.14 28.66 68.60 1.97 39.11 16 23 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 24 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 25 H -0.23 -8.26 6.68 99.48 0.66 -7.60 16 26 C -0.16 -4.58 5.29 -10.79 -0.06 -4.64 16 27 C -0.17 -5.33 8.86 30.62 0.27 -5.06 16 28 C -0.16 -4.21 10.19 30.62 0.31 -3.90 16 29 H 0.05 0.73 6.33 -2.39 -0.02 0.72 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 31 H 0.05 0.67 8.03 -2.39 -0.02 0.65 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.05 1.46 7.72 -2.38 -0.02 1.45 16 34 H 0.07 1.57 6.62 -2.39 -0.02 1.55 16 35 H 0.42 14.06 8.20 -96.74 -0.79 13.27 16 36 H 0.12 4.82 7.32 -2.91 -0.02 4.79 16 37 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 38 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 39 H 0.11 5.28 6.56 -2.91 -0.02 5.26 16 40 H 0.29 13.40 8.30 -92.71 -0.77 12.63 16 41 H 0.09 3.32 7.88 -2.39 -0.02 3.30 16 42 H 0.10 3.02 7.06 -2.39 -0.02 3.00 16 43 H 0.08 2.88 5.63 -2.39 -0.01 2.86 16 44 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -63.72 368.34 0.01 -63.71 By element: Atomic # 1 Polarization: 46.74 SS G_CDS: 0.18 Total: 46.92 kcal Atomic # 6 Polarization: -81.78 SS G_CDS: 3.97 Total: -77.81 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -0.47 Total: -79.42 kcal Atomic # 8 Polarization: -106.08 SS G_CDS: -5.37 Total: -111.44 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 1.97 Total: 39.11 kcal Atomic # 16 Polarization: 119.21 SS G_CDS: -0.28 Total: 118.94 kcal Total: -63.72 0.01 -63.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601432492.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.571 kcal (2) G-P(sol) polarization free energy of solvation -63.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds