Wall clock time and date at job start Tue Mar 31 2020 22:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46917 * 2 1 4 4 C 1.42907 * 113.99733 * 180.02562 * 3 2 1 5 5 H 1.09004 * 110.43416 * 29.29646 * 4 3 2 6 6 C 1.54885 * 110.48359 * 266.75902 * 4 3 2 7 7 C 1.54891 * 102.74969 * 203.38163 * 6 4 3 8 8 C 1.54267 * 104.19495 * 37.93755 * 7 6 4 9 9 C 1.54085 * 106.62163 * 336.28633 * 8 7 6 10 10 H 1.09002 * 110.00937 * 119.38085 * 9 8 7 11 11 N 1.46509 * 110.15601 * 240.87631 * 9 8 7 12 12 S 1.65599 * 119.99794 * 260.65783 * 11 9 8 13 13 O 1.42100 * 106.39899 * 179.08519 * 12 11 9 14 14 O 1.42097 * 106.40871 * 312.00983 * 12 11 9 15 15 C 1.76202 * 107.21529 * 65.55256 * 12 11 9 16 16 C 1.37644 * 120.12073 * 245.22840 * 15 12 11 17 17 C 1.38619 * 120.24332 * 179.74462 * 16 15 12 18 18 C 1.38660 * 120.50210 * 0.51084 * 17 16 15 19 19 C 1.37598 * 120.24880 * 359.76666 * 18 17 16 20 20 C 1.40691 * 120.13282 * 65.50130 * 15 12 11 21 21 C 1.41400 * 120.24087 * 0.02762 * 20 15 12 22 22 H 1.07994 * 120.00189 * 329.82685 * 21 20 15 23 23 C 1.39950 * 119.99774 * 149.83622 * 21 20 15 24 24 N 1.30826 * 119.99714 * 162.85814 * 23 21 20 25 25 Si 1.86804 * 119.99986 * 342.85317 * 23 21 20 26 26 H 1.48504 * 109.46841 * 92.71153 * 25 23 21 27 27 H 1.48504 * 109.46744 * 212.71079 * 25 23 21 28 28 H 1.48494 * 109.47156 * 332.70858 * 25 23 21 29 29 H 1.09003 * 109.47206 * 59.99703 * 1 2 3 30 30 H 1.08995 * 109.47382 * 300.00368 * 1 2 3 31 31 H 1.09001 * 109.47105 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46887 * 119.99909 * 2 1 3 33 33 H 1.09002 * 109.47171 * 239.99973 * 2 1 3 34 34 H 1.09008 * 110.76030 * 321.68969 * 6 4 3 35 35 H 1.08997 * 110.75916 * 85.06215 * 6 4 3 36 36 H 1.08996 * 110.48972 * 156.62028 * 7 6 4 37 37 H 1.09004 * 110.48381 * 279.26626 * 7 6 4 38 38 H 1.08997 * 110.03170 * 95.67740 * 8 7 6 39 39 H 1.08997 * 110.03310 * 217.05952 * 8 7 6 40 40 H 0.97000 * 119.99582 * 80.66629 * 11 9 8 41 41 H 1.07989 * 119.88006 * 359.97438 * 16 15 12 42 42 H 1.08002 * 119.75101 * 180.25798 * 17 16 15 43 43 H 1.07998 * 119.87905 * 179.75124 * 18 17 16 44 44 H 1.08001 * 120.13160 * 179.97438 * 19 18 17 45 45 H 0.96998 * 119.99458 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8804 0.6022 -0.5007 6 6 3.9653 1.5845 1.4478 7 6 5.3329 2.2839 1.2487 8 6 5.0775 3.2984 0.1149 9 6 3.8682 2.7729 -0.6825 10 1 3.0560 3.4991 -0.6500 11 7 4.2541 2.5125 -2.0717 12 16 3.9063 3.6232 -3.2497 13 8 4.4210 3.0945 -4.4641 14 8 2.5423 3.9808 -3.0740 15 6 4.8492 5.0694 -2.8976 16 6 4.2140 6.2431 -2.5607 17 6 4.9534 7.3810 -2.2780 18 6 6.3383 7.3541 -2.3413 19 6 6.9942 6.1933 -2.6815 20 6 6.2539 5.0306 -2.9654 21 6 6.9171 3.8321 -3.3166 22 1 6.4754 2.8781 -3.0693 23 6 8.1459 3.8822 -3.9845 24 7 8.9171 2.8259 -4.0155 25 14 8.6848 5.4574 -4.8319 26 1 9.5074 6.2661 -3.8966 27 1 9.4884 5.1222 -6.0349 28 1 7.4872 6.2358 -5.2377 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.3008 2.2010 2.0533 35 1 4.0967 0.6001 1.8970 36 1 5.6344 2.7990 2.1607 37 1 6.0914 1.5605 0.9494 38 1 4.8522 4.2787 0.5348 39 1 5.9515 3.3620 -0.5332 40 1 4.7132 1.6895 -2.3013 41 1 3.1357 6.2767 -2.5127 42 1 4.4469 8.2966 -2.0105 43 1 6.9044 8.2476 -2.1230 44 1 8.0730 6.1746 -2.7306 45 1 9.7686 2.8605 -4.4787 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601433247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:07 Heat of formation + Delta-G solvation = -115.959216 kcal Electronic energy + Delta-G solvation = -28937.871323 eV Core-core repulsion = 25046.393288 eV Total energy + Delta-G solvation = -3891.478035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -39.13470 -37.86899 -36.46585 -36.17786 -34.84514 -33.88208 -32.97477 -31.19001 -30.72168 -30.09766 -27.53679 -26.53600 -25.40819 -22.81145 -22.06573 -21.21571 -20.79948 -20.16300 -18.74187 -17.75378 -17.32117 -16.68866 -16.43618 -15.91898 -15.52468 -15.36265 -14.62640 -14.51705 -14.21053 -13.79405 -13.68985 -13.39408 -13.37734 -12.98667 -12.83434 -12.66171 -12.28993 -12.13578 -12.00024 -11.85344 -11.61222 -11.31527 -11.16933 -11.14573 -11.10214 -10.95027 -10.88856 -10.87832 -10.76826 -10.48591 -10.42327 -10.29536 -9.97982 -9.68580 -9.48553 -9.30154 -8.74425 -8.24750 -7.83979 -7.23321 -4.86457 1.49450 2.08217 2.52459 2.96493 3.08325 3.19475 3.65065 3.79385 3.92320 4.27472 4.63360 4.68687 4.78941 5.02314 5.07465 5.10941 5.17753 5.32508 5.33064 5.48695 5.58103 5.58690 5.67128 5.74199 5.80500 5.83031 5.86960 5.89460 5.94535 6.00551 6.07900 6.17674 6.20503 6.30705 6.42755 6.55662 6.64366 6.73577 6.92903 7.09349 7.25079 7.34533 7.38323 7.54058 7.60545 7.79431 8.03825 8.26713 8.48998 9.76145 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.004420 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.496873 B = 6333.566317 C = 6542.482850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.374 6.374 4 C 0.081 3.919 5 H 0.073 0.927 6 C -0.143 4.143 7 C -0.120 4.120 8 C -0.143 4.143 9 C 0.158 3.842 10 H 0.102 0.898 11 N -1.113 6.113 12 S 2.699 3.301 13 O -0.962 6.962 14 O -0.993 6.993 15 C -0.767 4.767 16 C 0.018 3.982 17 C -0.260 4.260 18 C -0.042 4.042 19 C -0.238 4.238 20 C 0.162 3.838 21 C -0.430 4.430 22 H 0.103 0.897 23 C 0.091 3.909 24 N -0.780 5.780 25 Si 0.913 3.087 26 H -0.267 1.267 27 H -0.285 1.285 28 H -0.241 1.241 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.412 0.588 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.651 -3.566 9.161 11.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.294 6.294 4 C 0.022 3.978 5 H 0.091 0.909 6 C -0.182 4.182 7 C -0.158 4.158 8 C -0.183 4.183 9 C 0.050 3.950 10 H 0.120 0.880 11 N -0.868 5.868 12 S 2.796 3.204 13 O -0.952 6.952 14 O -0.983 6.983 15 C -0.861 4.861 16 C -0.002 4.002 17 C -0.280 4.280 18 C -0.061 4.061 19 C -0.257 4.257 20 C 0.157 3.843 21 C -0.456 4.456 22 H 0.120 0.880 23 C -0.132 4.132 24 N -0.401 5.401 25 Si 0.738 3.262 26 H -0.193 1.193 27 H -0.212 1.212 28 H -0.164 1.164 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.246 0.754 41 H 0.131 0.869 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.125 0.875 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.262 -3.614 8.410 11.091 hybrid contribution 1.397 0.446 -0.027 1.467 sum -4.865 -3.168 8.383 10.197 Atomic orbital electron populations 1.21744 0.93955 1.01918 1.03288 1.22479 0.95527 0.84257 0.99793 1.87968 1.20595 1.25907 1.94887 1.23302 0.81061 0.98056 0.95409 0.90883 1.22940 0.97591 1.00943 0.96687 1.22252 0.96352 0.98381 0.98773 1.22719 0.99311 0.98694 0.97539 1.21290 0.96630 0.96385 0.80731 0.87975 1.55772 1.75782 1.35342 1.19914 1.01173 0.72946 0.73670 0.72614 1.93561 1.80761 1.78935 1.41985 1.93470 1.33855 1.84456 1.86516 1.29950 1.06025 1.16521 1.33605 1.20409 0.98109 0.91742 0.89909 1.20487 0.93784 0.98049 1.15724 1.20824 0.94500 0.96178 0.94604 1.21218 0.98442 0.94802 1.11273 1.17022 0.89320 0.92296 0.85664 1.19777 1.02108 0.94072 1.29692 0.87973 1.26157 0.94423 0.98494 0.94126 1.69639 1.09052 1.30859 1.30553 0.86314 0.80253 0.81143 0.78457 1.19267 1.21205 1.16405 0.91618 0.91947 0.91409 0.93681 0.93431 0.90350 0.91589 0.91430 0.91319 0.90875 0.88776 0.75438 0.86901 0.88199 0.88368 0.87525 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 37.16 0.38 -1.12 16 2 C 0.06 0.64 6.51 37.16 0.24 0.88 16 3 O -0.37 -5.44 10.05 -35.23 -0.35 -5.80 16 4 C 0.08 1.11 3.03 -25.08 -0.08 1.03 16 5 H 0.07 0.93 7.54 -51.93 -0.39 0.54 16 6 C -0.14 -1.65 6.62 -24.74 -0.16 -1.81 16 7 C -0.12 -1.46 6.83 -25.07 -0.17 -1.63 16 8 C -0.14 -2.16 6.60 -25.50 -0.17 -2.33 16 9 C 0.16 2.52 3.35 -66.70 -0.22 2.30 16 10 H 0.10 1.75 7.45 -51.93 -0.39 1.36 16 11 N -1.11 -19.94 4.55 -3.84 -0.02 -19.95 16 12 S 2.70 58.85 4.95 -107.50 -0.53 58.32 16 13 O -0.96 -24.01 16.55 -57.17 -0.95 -24.95 16 14 O -0.99 -22.67 16.31 -57.17 -0.93 -23.60 16 15 C -0.77 -17.38 5.95 -38.87 -0.23 -17.61 16 16 C 0.02 0.38 9.54 -39.66 -0.38 0.01 16 17 C -0.26 -5.20 10.05 -39.29 -0.39 -5.60 16 18 C -0.04 -0.86 10.02 -39.66 -0.40 -1.26 16 19 C -0.24 -5.36 7.20 -38.87 -0.28 -5.64 16 20 C 0.16 3.86 5.11 -106.82 -0.55 3.32 16 21 C -0.43 -10.70 8.10 -37.74 -0.31 -11.00 16 22 H 0.10 2.53 6.03 -52.49 -0.32 2.21 16 23 C 0.09 2.25 5.42 -17.34 -0.09 2.16 16 24 N -0.78 -19.17 13.93 55.55 0.77 -18.39 16 25 Si 0.91 19.97 24.51 -169.99 -4.17 15.80 16 26 H -0.27 -5.48 6.59 56.52 0.37 -5.11 16 27 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 28 H -0.24 -5.55 6.93 56.52 0.39 -5.16 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.52 8.10 -51.93 -0.42 0.10 16 34 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.09 1.64 7.92 -51.93 -0.41 1.22 16 40 H 0.41 6.77 8.41 -34.48 -0.29 6.48 16 41 H 0.11 2.22 7.32 -52.49 -0.38 1.84 16 42 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.11 2.35 4.62 -52.49 -0.24 2.10 16 45 H 0.29 6.47 8.30 -40.82 -0.34 6.13 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -29.89 371.18 -10.05 -39.95 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -6.67 Total: 11.35 kcal Atomic # 6 Polarization: -35.50 SS G_CDS: -2.81 Total: -38.31 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.76 Total: -38.35 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -2.23 Total: -54.35 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.17 Total: 15.80 kcal Atomic # 16 Polarization: 58.85 SS G_CDS: -0.53 Total: 58.32 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.89 -10.05 -39.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601433247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.010 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds