Wall clock time and date at job start Tue Mar 31 2020 22:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46917 * 2 1 4 4 C 1.42907 * 113.99733 * 180.02562 * 3 2 1 5 5 H 1.09004 * 110.43416 * 29.29646 * 4 3 2 6 6 C 1.54885 * 110.48359 * 266.75902 * 4 3 2 7 7 C 1.54891 * 102.74969 * 203.38163 * 6 4 3 8 8 C 1.54267 * 104.19495 * 37.93755 * 7 6 4 9 9 C 1.54085 * 106.62163 * 336.28633 * 8 7 6 10 10 H 1.09002 * 110.00937 * 119.38085 * 9 8 7 11 11 N 1.46509 * 110.15601 * 240.87631 * 9 8 7 12 12 S 1.65599 * 119.99794 * 260.65783 * 11 9 8 13 13 O 1.42100 * 106.39899 * 179.08519 * 12 11 9 14 14 O 1.42097 * 106.40871 * 312.00983 * 12 11 9 15 15 C 1.76202 * 107.21529 * 65.55256 * 12 11 9 16 16 C 1.37644 * 120.12073 * 245.22840 * 15 12 11 17 17 C 1.38619 * 120.24332 * 179.74462 * 16 15 12 18 18 C 1.38660 * 120.50210 * 0.51084 * 17 16 15 19 19 C 1.37598 * 120.24880 * 359.76666 * 18 17 16 20 20 C 1.40691 * 120.13282 * 65.50130 * 15 12 11 21 21 C 1.41400 * 120.24087 * 0.02762 * 20 15 12 22 22 H 1.07994 * 120.00189 * 329.82685 * 21 20 15 23 23 C 1.39950 * 119.99774 * 149.83622 * 21 20 15 24 24 N 1.30826 * 119.99714 * 162.85814 * 23 21 20 25 25 Si 1.86804 * 119.99986 * 342.85317 * 23 21 20 26 26 H 1.48504 * 109.46841 * 92.71153 * 25 23 21 27 27 H 1.48504 * 109.46744 * 212.71079 * 25 23 21 28 28 H 1.48494 * 109.47156 * 332.70858 * 25 23 21 29 29 H 1.09003 * 109.47206 * 59.99703 * 1 2 3 30 30 H 1.08995 * 109.47382 * 300.00368 * 1 2 3 31 31 H 1.09001 * 109.47105 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46887 * 119.99909 * 2 1 3 33 33 H 1.09002 * 109.47171 * 239.99973 * 2 1 3 34 34 H 1.09008 * 110.76030 * 321.68969 * 6 4 3 35 35 H 1.08997 * 110.75916 * 85.06215 * 6 4 3 36 36 H 1.08996 * 110.48972 * 156.62028 * 7 6 4 37 37 H 1.09004 * 110.48381 * 279.26626 * 7 6 4 38 38 H 1.08997 * 110.03170 * 95.67740 * 8 7 6 39 39 H 1.08997 * 110.03310 * 217.05952 * 8 7 6 40 40 H 0.97000 * 119.99582 * 80.66629 * 11 9 8 41 41 H 1.07989 * 119.88006 * 359.97438 * 16 15 12 42 42 H 1.08002 * 119.75101 * 180.25798 * 17 16 15 43 43 H 1.07998 * 119.87905 * 179.75124 * 18 17 16 44 44 H 1.08001 * 120.13160 * 179.97438 * 19 18 17 45 45 H 0.96998 * 119.99458 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8804 0.6022 -0.5007 6 6 3.9653 1.5845 1.4478 7 6 5.3329 2.2839 1.2487 8 6 5.0775 3.2984 0.1149 9 6 3.8682 2.7729 -0.6825 10 1 3.0560 3.4991 -0.6500 11 7 4.2541 2.5125 -2.0717 12 16 3.9063 3.6232 -3.2497 13 8 4.4210 3.0945 -4.4641 14 8 2.5423 3.9808 -3.0740 15 6 4.8492 5.0694 -2.8976 16 6 4.2140 6.2431 -2.5607 17 6 4.9534 7.3810 -2.2780 18 6 6.3383 7.3541 -2.3413 19 6 6.9942 6.1933 -2.6815 20 6 6.2539 5.0306 -2.9654 21 6 6.9171 3.8321 -3.3166 22 1 6.4754 2.8781 -3.0693 23 6 8.1459 3.8822 -3.9845 24 7 8.9171 2.8259 -4.0155 25 14 8.6848 5.4574 -4.8319 26 1 9.5074 6.2661 -3.8966 27 1 9.4884 5.1222 -6.0349 28 1 7.4872 6.2358 -5.2377 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.3008 2.2010 2.0533 35 1 4.0967 0.6001 1.8970 36 1 5.6344 2.7990 2.1607 37 1 6.0914 1.5605 0.9494 38 1 4.8522 4.2787 0.5348 39 1 5.9515 3.3620 -0.5332 40 1 4.7132 1.6895 -2.3013 41 1 3.1357 6.2767 -2.5127 42 1 4.4469 8.2966 -2.0105 43 1 6.9044 8.2476 -2.1230 44 1 8.0730 6.1746 -2.7306 45 1 9.7686 2.8605 -4.4787 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601433247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:06 Heat of formation + Delta-G solvation = -136.052855 kcal Electronic energy + Delta-G solvation = -28938.742648 eV Core-core repulsion = 25046.393288 eV Total energy + Delta-G solvation = -3892.349360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.25083 -39.57436 -38.07787 -37.50578 -36.70700 -35.65176 -34.30469 -32.47217 -32.06143 -31.79157 -28.64531 -27.72736 -27.16832 -23.76331 -23.67363 -22.93984 -21.88210 -21.39740 -20.34252 -19.54557 -18.84987 -18.23686 -17.67887 -17.41330 -17.09983 -16.47121 -16.26006 -15.88625 -15.57434 -15.48855 -15.26242 -14.82539 -14.54658 -14.43667 -14.06959 -13.95122 -13.79788 -13.58108 -13.21079 -13.09493 -13.06126 -13.00449 -12.88871 -12.69448 -12.67997 -12.54088 -12.17774 -12.15788 -12.05063 -11.92892 -11.72082 -11.57370 -11.43814 -11.31106 -11.04728 -10.65246 -10.09977 -9.93895 -9.57770 -9.03182 -6.69254 -0.21877 0.35489 0.79125 1.21767 1.36235 1.44102 2.04372 2.24740 2.52441 2.73014 2.94729 3.32255 3.52349 3.68958 3.83572 3.99828 4.19137 4.21956 4.25627 4.32050 4.33420 4.39789 4.51440 4.54237 4.57680 4.58315 4.64276 4.72314 4.78122 4.90288 4.93674 5.04404 5.05846 5.16722 5.19982 5.25854 5.29988 5.37049 5.39736 5.49892 5.57632 5.66990 5.84807 6.03171 6.14473 6.25769 6.35351 6.50817 6.69461 8.01653 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.004420 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.496873 B = 6333.566317 C = 6542.482850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.398 6.398 4 C 0.081 3.919 5 H 0.080 0.920 6 C -0.131 4.131 7 C -0.113 4.113 8 C -0.141 4.141 9 C 0.150 3.850 10 H 0.087 0.913 11 N -1.103 6.103 12 S 2.711 3.289 13 O -1.000 7.000 14 O -1.007 7.007 15 C -0.776 4.776 16 C 0.002 3.998 17 C -0.247 4.247 18 C -0.039 4.039 19 C -0.259 4.259 20 C 0.153 3.847 21 C -0.461 4.461 22 H 0.088 0.912 23 C 0.059 3.941 24 N -0.812 5.812 25 Si 0.949 3.051 26 H -0.243 1.243 27 H -0.276 1.276 28 H -0.261 1.261 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.418 0.582 41 H 0.125 0.875 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.110 0.890 45 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.884 -2.501 11.070 12.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.318 6.318 4 C 0.022 3.978 5 H 0.098 0.902 6 C -0.169 4.169 7 C -0.151 4.151 8 C -0.181 4.181 9 C 0.043 3.957 10 H 0.106 0.894 11 N -0.862 5.862 12 S 2.808 3.192 13 O -0.991 6.991 14 O -0.997 6.997 15 C -0.870 4.870 16 C -0.018 4.018 17 C -0.267 4.267 18 C -0.057 4.057 19 C -0.278 4.278 20 C 0.148 3.852 21 C -0.489 4.489 22 H 0.106 0.894 23 C -0.161 4.161 24 N -0.436 5.436 25 Si 0.773 3.227 26 H -0.168 1.168 27 H -0.202 1.202 28 H -0.185 1.185 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.253 0.747 41 H 0.143 0.857 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.128 0.872 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.489 -2.555 10.327 12.461 hybrid contribution 1.293 0.195 -0.547 1.417 sum -5.196 -2.361 9.781 11.324 Atomic orbital electron populations 1.21775 0.93055 1.03359 1.02560 1.22733 0.96363 0.83025 1.00834 1.87936 1.20810 1.27976 1.95096 1.23312 0.81169 0.96682 0.96678 0.90163 1.22886 0.96666 1.02267 0.95096 1.22235 0.96994 0.97716 0.98159 1.22645 0.97612 0.99805 0.98032 1.21512 0.96685 0.97877 0.79670 0.89443 1.55436 1.75761 1.34645 1.20342 1.00592 0.72471 0.73772 0.72385 1.93505 1.81250 1.79652 1.44644 1.93441 1.34602 1.84845 1.86800 1.30060 1.05949 1.17483 1.33550 1.20720 0.99054 0.91815 0.90197 1.20973 0.93900 0.98744 1.13115 1.21281 0.94997 0.96727 0.92691 1.21405 0.98862 0.95315 1.12247 1.17172 0.89826 0.92641 0.85549 1.19840 1.03076 0.94164 1.31830 0.89368 1.26708 0.94451 1.00530 0.94395 1.69645 1.09873 1.31977 1.32087 0.85764 0.79543 0.78891 0.78540 1.16754 1.20216 1.18502 0.93276 0.91710 0.88909 0.91472 0.93500 0.89945 0.89122 0.89653 0.91176 0.90825 0.91519 0.74710 0.85678 0.84517 0.84455 0.87212 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 10.28 71.98 0.74 -2.04 16 2 C 0.05 0.99 6.51 71.98 0.47 1.46 16 3 O -0.40 -11.24 10.05 -148.98 -1.50 -12.73 16 4 C 0.08 2.14 3.03 31.67 0.10 2.24 16 5 H 0.08 1.97 7.54 -2.39 -0.02 1.95 16 6 C -0.13 -2.71 6.62 31.88 0.21 -2.50 16 7 C -0.11 -2.58 6.83 31.67 0.22 -2.36 16 8 C -0.14 -4.26 6.60 31.39 0.21 -4.06 16 9 C 0.15 4.84 3.35 45.78 0.15 4.99 16 10 H 0.09 3.06 7.45 -2.39 -0.02 3.04 16 11 N -1.10 -40.95 4.55 -166.07 -0.76 -41.70 16 12 S 2.71 121.93 4.95 -56.49 -0.28 121.65 16 13 O -1.00 -52.12 16.55 -128.00 -2.12 -54.24 16 14 O -1.01 -46.86 16.31 -128.00 -2.09 -48.95 16 15 C -0.78 -35.47 5.95 22.73 0.14 -35.33 16 16 C 0.00 0.08 9.54 22.22 0.21 0.29 16 17 C -0.25 -9.10 10.05 22.46 0.23 -8.88 16 18 C -0.04 -1.45 10.02 22.22 0.22 -1.23 16 19 C -0.26 -11.36 7.20 22.73 0.16 -11.20 16 20 C 0.15 7.36 5.11 -21.29 -0.11 7.25 16 21 C -0.46 -23.77 8.10 23.46 0.19 -23.58 16 22 H 0.09 4.62 6.03 -2.91 -0.02 4.60 16 23 C 0.06 2.97 5.42 85.26 0.46 3.43 16 24 N -0.81 -41.06 13.93 21.83 0.30 -40.76 16 25 Si 0.95 40.74 24.51 68.60 1.68 42.42 16 26 H -0.24 -9.37 6.59 99.48 0.66 -8.72 16 27 H -0.28 -11.23 7.11 99.48 0.71 -10.53 16 28 H -0.26 -11.91 6.93 99.48 0.69 -11.22 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 34 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.07 2.40 7.92 -2.39 -0.02 2.38 16 40 H 0.42 14.45 8.41 -96.74 -0.81 13.64 16 41 H 0.13 4.78 7.32 -2.92 -0.02 4.76 16 42 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 43 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 44 H 0.11 4.69 4.62 -2.91 -0.01 4.67 16 45 H 0.30 13.58 8.30 -92.71 -0.77 12.81 16 Total: -1.00 -65.45 371.18 -1.04 -66.49 By element: Atomic # 1 Polarization: 39.22 SS G_CDS: 0.12 Total: 39.34 kcal Atomic # 6 Polarization: -75.10 SS G_CDS: 3.60 Total: -71.51 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -0.45 Total: -82.46 kcal Atomic # 8 Polarization: -110.22 SS G_CDS: -5.70 Total: -115.93 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 1.68 Total: 42.42 kcal Atomic # 16 Polarization: 121.93 SS G_CDS: -0.28 Total: 121.65 kcal Total: -65.45 -1.04 -66.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601433247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.562 kcal (2) G-P(sol) polarization free energy of solvation -65.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds