Wall clock time and date at job start Tue Mar 31 2020 22:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00052 * 2 1 4 4 N 1.46502 * 109.47247 * 124.99475 * 3 2 1 5 5 C 1.46504 * 120.00194 * 272.44951 * 4 3 2 6 6 H 1.08993 * 109.47239 * 173.76155 * 5 4 3 7 7 C 1.52998 * 109.47105 * 53.75726 * 5 4 3 8 8 C 1.53005 * 109.46702 * 293.75881 * 5 4 3 9 9 O 1.42905 * 109.47023 * 65.24853 * 8 5 4 10 10 C 1.42900 * 113.99884 * 180.02562 * 9 8 5 11 11 S 1.65601 * 120.00113 * 92.44406 * 4 3 2 12 12 O 1.42098 * 106.40335 * 168.38414 * 11 4 3 13 13 O 1.42100 * 106.39906 * 35.46057 * 11 4 3 14 14 C 1.76202 * 107.21670 * 281.92305 * 11 4 3 15 15 C 1.37643 * 120.12677 * 111.04410 * 14 11 4 16 16 C 1.38616 * 120.24463 * 180.31755 * 15 14 11 17 17 C 1.38654 * 120.50501 * 359.67067 * 16 15 14 18 18 C 1.37602 * 120.24383 * 0.02562 * 17 16 15 19 19 C 1.40694 * 120.12674 * 290.73322 * 14 11 4 20 20 C 1.41396 * 120.24577 * 359.97438 * 19 14 11 21 21 H 1.07993 * 119.99852 * 36.35017 * 20 19 14 22 22 C 1.39944 * 120.00073 * 216.34842 * 20 19 14 23 23 N 1.30820 * 119.99962 * 186.84058 * 22 20 19 24 24 Si 1.86798 * 119.99906 * 6.84359 * 22 20 19 25 25 H 1.48498 * 109.47314 * 265.72213 * 24 22 20 26 26 H 1.48501 * 109.47323 * 25.72509 * 24 22 20 27 27 H 1.48505 * 109.47061 * 145.72545 * 24 22 20 28 28 H 1.07999 * 119.99797 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.00023 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00023 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46911 * 5.00089 * 3 2 1 32 32 H 1.08989 * 109.46968 * 244.99530 * 3 2 1 33 33 H 1.09003 * 109.47280 * 57.97427 * 7 5 4 34 34 H 1.09007 * 109.47006 * 177.97482 * 7 5 4 35 35 H 1.08997 * 109.47654 * 297.97094 * 7 5 4 36 36 H 1.08994 * 109.46837 * 185.24647 * 8 5 4 37 37 H 1.09000 * 109.47326 * 305.24963 * 8 5 4 38 38 H 1.08990 * 109.47187 * 59.99986 * 10 9 8 39 39 H 1.09004 * 109.46717 * 180.02562 * 10 9 8 40 40 H 1.09006 * 109.46657 * 299.99480 * 10 9 8 41 41 H 1.08000 * 119.87617 * 0.02562 * 15 14 11 42 42 H 1.07997 * 119.74605 * 179.68884 * 16 15 14 43 43 H 1.07993 * 119.87943 * 180.02562 * 17 16 15 44 44 H 1.08004 * 120.12242 * 180.02562 * 18 17 16 45 45 H 0.97003 * 120.00141 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5430 1.8152 2.4391 6 1 3.3309 1.6584 3.1757 7 6 1.2891 1.0472 2.8620 8 6 2.2201 3.3080 2.3475 9 8 1.1060 3.5016 1.4738 10 6 0.7209 4.8688 1.3173 11 16 4.5547 0.8161 0.9326 12 8 5.2608 1.2144 2.0996 13 8 4.9408 1.2023 -0.3793 14 6 4.5272 -0.9457 0.9448 15 6 4.7982 -1.6488 -0.2071 16 6 4.7708 -3.0347 -0.2019 17 6 4.4776 -3.7285 0.9623 18 6 4.2096 -3.0463 2.1268 19 6 4.2347 -1.6392 2.1334 20 6 3.9617 -0.9276 3.3244 21 1 3.4147 0.0027 3.2843 22 6 4.4003 -1.4289 4.5552 23 7 4.0350 -0.8445 5.6671 24 14 5.5074 -2.9325 4.6102 25 1 4.6786 -4.1510 4.7935 26 1 6.2652 -3.0361 3.3374 27 1 6.4584 -2.8057 5.7437 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4025 -0.9313 33 1 1.5095 -0.0199 2.8923 34 1 0.9745 1.3815 3.8507 35 1 0.4899 1.2329 2.1445 36 1 1.9746 3.6881 3.3390 37 1 3.0854 3.8436 1.9570 38 1 1.5551 5.4364 0.9052 39 1 -0.1311 4.9310 0.6402 40 1 0.4444 5.2817 2.2875 41 1 5.0283 -1.1187 -1.1194 42 1 4.9797 -3.5782 -1.1114 43 1 4.4594 -4.8083 0.9549 44 1 3.9819 -3.5887 3.0326 45 1 4.3393 -1.1917 6.5202 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601465559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:24 Heat of formation + Delta-G solvation = -67.856091 kcal Electronic energy + Delta-G solvation = -29959.834799 eV Core-core repulsion = 26070.442673 eV Total energy + Delta-G solvation = -3889.392127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -38.54120 -37.89181 -36.37910 -36.28592 -34.87063 -33.79497 -33.09216 -30.71000 -30.33347 -30.13009 -27.13301 -25.69089 -25.38024 -24.84063 -22.06666 -21.17522 -20.66911 -19.69127 -18.13993 -17.71349 -17.40416 -16.48082 -15.94619 -15.88991 -15.54309 -15.23339 -14.78681 -14.51674 -14.19367 -13.82364 -13.72641 -13.42536 -13.16897 -12.95308 -12.57218 -12.49014 -12.31422 -12.16696 -11.91289 -11.81048 -11.42817 -11.27667 -11.17382 -11.15527 -11.10159 -10.96959 -10.81294 -10.64579 -10.50435 -10.35400 -10.17175 -9.92917 -9.59118 -9.43991 -9.27266 -8.91717 -8.42754 -8.18863 -7.77065 -7.09830 -4.80749 1.41649 2.07078 2.52368 2.69635 2.99479 3.11075 3.20909 3.79688 3.85925 3.95999 4.32856 4.68065 5.04624 5.18106 5.23174 5.35991 5.36693 5.39430 5.52081 5.59736 5.65337 5.67820 5.77176 5.81404 5.87280 5.93042 6.08595 6.16517 6.22254 6.27641 6.37855 6.46956 6.51830 6.66252 6.76572 6.95930 7.00346 7.04901 7.07059 7.07468 7.22567 7.29644 7.38001 7.43661 7.54136 7.82173 8.10352 8.28721 8.54625 9.88758 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012504 B = 0.006016 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.666489 B = 4653.450880 C = 5410.879303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.157 4.157 3 C 0.138 3.862 4 N -0.984 5.984 5 C 0.147 3.853 6 H 0.129 0.871 7 C -0.156 4.156 8 C 0.053 3.947 9 O -0.379 6.379 10 C 0.028 3.972 11 S 2.692 3.308 12 O -0.956 6.956 13 O -0.994 6.994 14 C -0.760 4.760 15 C 0.013 3.987 16 C -0.254 4.254 17 C -0.048 4.048 18 C -0.226 4.226 19 C 0.163 3.837 20 C -0.446 4.446 21 H 0.119 0.881 22 C 0.093 3.907 23 N -0.789 5.789 24 Si 0.903 3.097 25 H -0.269 1.269 26 H -0.238 1.238 27 H -0.286 1.286 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.038 0.962 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.509 4.607 -4.764 9.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.176 4.176 3 C 0.013 3.987 4 N -0.818 5.818 5 C 0.042 3.958 6 H 0.147 0.853 7 C -0.214 4.214 8 C -0.025 4.025 9 O -0.298 6.298 10 C -0.069 4.069 11 S 2.790 3.210 12 O -0.947 6.947 13 O -0.985 6.985 14 C -0.854 4.854 15 C -0.007 4.007 16 C -0.274 4.274 17 C -0.067 4.067 18 C -0.245 4.245 19 C 0.158 3.842 20 C -0.474 4.474 21 H 0.136 0.864 22 C -0.129 4.129 23 N -0.411 5.411 24 Si 0.729 3.271 25 H -0.195 1.195 26 H -0.161 1.161 27 H -0.213 1.213 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.099 0.901 40 H 0.056 0.944 41 H 0.131 0.869 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.882 5.148 -4.647 9.093 hybrid contribution 0.207 -1.338 0.447 1.426 sum -5.675 3.810 -4.199 8.022 Atomic orbital electron populations 1.23660 0.95757 1.01127 1.02449 1.23565 0.96533 0.99601 0.97923 1.20617 0.93436 0.96402 0.88254 1.57591 1.29549 1.78839 1.15819 1.21143 0.99512 0.90304 0.84880 0.85320 1.22149 0.96933 1.01794 1.00570 1.23085 0.88457 0.97716 0.93243 1.87879 1.50212 1.24656 1.67073 1.22716 0.99742 0.83955 1.00443 1.01455 0.72257 0.74735 0.72550 1.93544 1.69612 1.82554 1.48969 1.93444 1.81225 1.83251 1.40575 1.30118 1.30549 1.23058 1.01686 1.20412 0.90789 0.94307 0.95186 1.20507 1.15351 0.93906 0.97639 1.20828 0.94605 0.97846 0.93374 1.21175 1.11195 0.94816 0.97345 1.17106 0.84541 0.91428 0.91098 1.20155 1.29455 1.08529 0.89219 0.86350 1.26029 0.94728 0.97470 0.94645 1.69570 1.34930 1.37409 0.99186 0.86431 0.80674 0.80309 0.79659 1.19508 1.16100 1.21301 0.89134 0.88763 0.86993 0.87429 0.89746 0.90572 0.92658 0.91583 0.92350 0.93174 0.94371 0.90063 0.94399 0.86930 0.88162 0.88339 0.87798 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.63 13.03 29.01 0.38 -2.25 16 2 C -0.16 -2.47 8.54 -36.02 -0.31 -2.78 16 3 C 0.14 2.22 5.44 -5.19 -0.03 2.19 16 4 N -0.98 -18.10 2.65 -108.57 -0.29 -18.39 16 5 C 0.15 2.61 2.08 -67.93 -0.14 2.46 16 6 H 0.13 2.62 5.19 -51.93 -0.27 2.35 16 7 C -0.16 -2.64 7.60 37.16 0.28 -2.36 16 8 C 0.05 0.78 5.73 37.16 0.21 1.00 16 9 O -0.38 -5.14 6.91 -35.23 -0.24 -5.39 16 10 C 0.03 0.29 11.01 101.05 1.11 1.40 16 11 S 2.69 58.76 5.06 -107.50 -0.54 58.22 16 12 O -0.96 -23.48 14.81 -57.17 -0.85 -24.33 16 13 O -0.99 -22.36 15.85 -57.17 -0.91 -23.26 16 14 C -0.76 -17.26 5.71 -38.87 -0.22 -17.49 16 15 C 0.01 0.27 9.53 -39.66 -0.38 -0.11 16 16 C -0.25 -5.07 10.05 -39.29 -0.39 -5.46 16 17 C -0.05 -0.98 10.02 -39.66 -0.40 -1.37 16 18 C -0.23 -5.10 6.80 -38.87 -0.26 -5.36 16 19 C 0.16 3.90 5.04 -106.83 -0.54 3.36 16 20 C -0.45 -11.02 7.42 -37.74 -0.28 -11.30 16 21 H 0.12 2.82 2.18 -52.49 -0.11 2.71 16 22 C 0.09 2.29 5.50 -17.34 -0.10 2.20 16 23 N -0.79 -19.39 13.93 55.55 0.77 -18.62 16 24 Si 0.90 19.93 24.47 -169.99 -4.16 15.77 16 25 H -0.27 -5.62 6.88 56.52 0.39 -5.24 16 26 H -0.24 -5.48 6.38 56.52 0.36 -5.11 16 27 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 28 H 0.09 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.09 1.18 7.84 -52.49 -0.41 0.76 16 30 H 0.11 1.97 7.79 -52.49 -0.41 1.56 16 31 H 0.11 1.59 4.82 -51.93 -0.25 1.34 16 32 H 0.08 1.36 7.15 -51.94 -0.37 0.99 16 33 H 0.08 1.47 6.85 -51.93 -0.36 1.11 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.03 5.35 -51.93 -0.28 0.75 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.11 2.20 7.33 -52.49 -0.38 1.82 16 42 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 44 H 0.10 2.29 4.84 -52.48 -0.25 2.03 16 45 H 0.29 6.50 8.30 -40.82 -0.34 6.16 16 LS Contribution 358.19 15.07 5.40 5.40 Total: -1.00 -28.44 358.19 -7.97 -36.40 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.09 Total: 10.06 kcal Atomic # 6 Polarization: -34.80 SS G_CDS: -1.06 Total: -35.86 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.49 Total: -37.00 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -2.00 Total: -52.98 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.16 Total: 15.77 kcal Atomic # 16 Polarization: 58.76 SS G_CDS: -0.54 Total: 58.22 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.44 -7.97 -36.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601465559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.451 kcal (2) G-P(sol) polarization free energy of solvation -28.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds