Wall clock time and date at job start Tue Mar 31 2020 22:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00052 * 2 1 4 4 N 1.46502 * 109.47247 * 124.99475 * 3 2 1 5 5 C 1.46504 * 120.00194 * 272.44951 * 4 3 2 6 6 H 1.08993 * 109.47239 * 173.76155 * 5 4 3 7 7 C 1.52998 * 109.47105 * 53.75726 * 5 4 3 8 8 C 1.53005 * 109.46702 * 293.75881 * 5 4 3 9 9 O 1.42905 * 109.47023 * 65.24853 * 8 5 4 10 10 C 1.42900 * 113.99884 * 180.02562 * 9 8 5 11 11 S 1.65601 * 120.00113 * 92.44406 * 4 3 2 12 12 O 1.42098 * 106.40335 * 168.38414 * 11 4 3 13 13 O 1.42100 * 106.39906 * 35.46057 * 11 4 3 14 14 C 1.76202 * 107.21670 * 281.92305 * 11 4 3 15 15 C 1.37643 * 120.12677 * 111.04410 * 14 11 4 16 16 C 1.38616 * 120.24463 * 180.31755 * 15 14 11 17 17 C 1.38654 * 120.50501 * 359.67067 * 16 15 14 18 18 C 1.37602 * 120.24383 * 0.02562 * 17 16 15 19 19 C 1.40694 * 120.12674 * 290.73322 * 14 11 4 20 20 C 1.41396 * 120.24577 * 359.97438 * 19 14 11 21 21 H 1.07993 * 119.99852 * 36.35017 * 20 19 14 22 22 C 1.39944 * 120.00073 * 216.34842 * 20 19 14 23 23 N 1.30820 * 119.99962 * 186.84058 * 22 20 19 24 24 Si 1.86798 * 119.99906 * 6.84359 * 22 20 19 25 25 H 1.48498 * 109.47314 * 265.72213 * 24 22 20 26 26 H 1.48501 * 109.47323 * 25.72509 * 24 22 20 27 27 H 1.48505 * 109.47061 * 145.72545 * 24 22 20 28 28 H 1.07999 * 119.99797 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.00023 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00023 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46911 * 5.00089 * 3 2 1 32 32 H 1.08989 * 109.46968 * 244.99530 * 3 2 1 33 33 H 1.09003 * 109.47280 * 57.97427 * 7 5 4 34 34 H 1.09007 * 109.47006 * 177.97482 * 7 5 4 35 35 H 1.08997 * 109.47654 * 297.97094 * 7 5 4 36 36 H 1.08994 * 109.46837 * 185.24647 * 8 5 4 37 37 H 1.09000 * 109.47326 * 305.24963 * 8 5 4 38 38 H 1.08990 * 109.47187 * 59.99986 * 10 9 8 39 39 H 1.09004 * 109.46717 * 180.02562 * 10 9 8 40 40 H 1.09006 * 109.46657 * 299.99480 * 10 9 8 41 41 H 1.08000 * 119.87617 * 0.02562 * 15 14 11 42 42 H 1.07997 * 119.74605 * 179.68884 * 16 15 14 43 43 H 1.07993 * 119.87943 * 180.02562 * 17 16 15 44 44 H 1.08004 * 120.12242 * 180.02562 * 18 17 16 45 45 H 0.97003 * 120.00141 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5430 1.8152 2.4391 6 1 3.3309 1.6584 3.1757 7 6 1.2891 1.0472 2.8620 8 6 2.2201 3.3080 2.3475 9 8 1.1060 3.5016 1.4738 10 6 0.7209 4.8688 1.3173 11 16 4.5547 0.8161 0.9326 12 8 5.2608 1.2144 2.0996 13 8 4.9408 1.2023 -0.3793 14 6 4.5272 -0.9457 0.9448 15 6 4.7982 -1.6488 -0.2071 16 6 4.7708 -3.0347 -0.2019 17 6 4.4776 -3.7285 0.9623 18 6 4.2096 -3.0463 2.1268 19 6 4.2347 -1.6392 2.1334 20 6 3.9617 -0.9276 3.3244 21 1 3.4147 0.0027 3.2843 22 6 4.4003 -1.4289 4.5552 23 7 4.0350 -0.8445 5.6671 24 14 5.5074 -2.9325 4.6102 25 1 4.6786 -4.1510 4.7935 26 1 6.2652 -3.0361 3.3374 27 1 6.4584 -2.8057 5.7437 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4025 -0.9313 33 1 1.5095 -0.0199 2.8923 34 1 0.9745 1.3815 3.8507 35 1 0.4899 1.2329 2.1445 36 1 1.9746 3.6881 3.3390 37 1 3.0854 3.8436 1.9570 38 1 1.5551 5.4364 0.9052 39 1 -0.1311 4.9310 0.6402 40 1 0.4444 5.2817 2.2875 41 1 5.0283 -1.1187 -1.1194 42 1 4.9797 -3.5782 -1.1114 43 1 4.4594 -4.8083 0.9549 44 1 3.9819 -3.5887 3.0326 45 1 4.3393 -1.1917 6.5202 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601465559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:24 Heat of formation + Delta-G solvation = -85.956966 kcal Electronic energy + Delta-G solvation = -29960.619712 eV Core-core repulsion = 26070.442673 eV Total energy + Delta-G solvation = -3890.177039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.82086 -39.52320 -38.15387 -37.48583 -36.68168 -35.54484 -34.36280 -32.44172 -31.81881 -31.68049 -28.17276 -27.11222 -26.89504 -26.01476 -23.74459 -22.90366 -22.06773 -20.96954 -19.71411 -19.43841 -18.99688 -18.07043 -17.36795 -17.08312 -17.01106 -16.54634 -16.14858 -15.99304 -15.74908 -15.43737 -15.33554 -14.88529 -14.62944 -14.35884 -14.06975 -14.04480 -13.78376 -13.54725 -13.39715 -13.16407 -12.98101 -12.91878 -12.74612 -12.71901 -12.64556 -12.50274 -12.33048 -12.00018 -11.97291 -11.78646 -11.72322 -11.64725 -11.29497 -11.00656 -10.49054 -10.14390 -9.93663 -9.75482 -9.49859 -8.88994 -6.61704 -0.25543 0.35417 0.79868 1.23133 1.35665 1.43567 1.48896 2.08283 2.27852 2.58969 2.87143 2.96610 3.31547 3.64270 3.85928 4.05528 4.20546 4.24360 4.30631 4.32134 4.39714 4.51427 4.57240 4.61364 4.62664 4.67034 4.70815 4.77254 4.86447 4.93741 4.95940 5.08533 5.16203 5.24377 5.25969 5.37928 5.39191 5.54424 5.56632 5.71638 5.78254 5.84347 5.89220 6.07563 6.10721 6.28739 6.34300 6.54428 6.75817 8.13881 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012504 B = 0.006016 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.666489 B = 4653.450880 C = 5410.879303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.181 4.181 3 C 0.139 3.861 4 N -0.977 5.977 5 C 0.145 3.855 6 H 0.096 0.904 7 C -0.143 4.143 8 C 0.060 3.940 9 O -0.390 6.390 10 C 0.022 3.978 11 S 2.699 3.301 12 O -0.991 6.991 13 O -1.005 7.005 14 C -0.770 4.770 15 C -0.002 4.002 16 C -0.242 4.242 17 C -0.046 4.046 18 C -0.247 4.247 19 C 0.150 3.850 20 C -0.477 4.477 21 H 0.118 0.882 22 C 0.060 3.940 23 N -0.821 5.821 24 Si 0.939 3.061 25 H -0.250 1.250 26 H -0.254 1.254 27 H -0.282 1.282 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.127 0.873 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.102 0.898 40 H 0.049 0.951 41 H 0.126 0.874 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.106 0.894 45 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.915 4.148 -6.373 10.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.201 4.201 3 C 0.015 3.985 4 N -0.813 5.813 5 C 0.039 3.961 6 H 0.114 0.886 7 C -0.202 4.202 8 C -0.018 4.018 9 O -0.310 6.310 10 C -0.074 4.074 11 S 2.797 3.203 12 O -0.981 6.981 13 O -0.996 6.996 14 C -0.864 4.864 15 C -0.022 4.022 16 C -0.262 4.262 17 C -0.064 4.064 18 C -0.267 4.267 19 C 0.145 3.855 20 C -0.505 4.505 21 H 0.135 0.865 22 C -0.158 4.158 23 N -0.445 5.445 24 Si 0.763 3.237 25 H -0.175 1.175 26 H -0.178 1.178 27 H -0.209 1.209 28 H 0.119 0.881 29 H 0.132 0.868 30 H 0.107 0.893 31 H 0.144 0.856 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.120 0.880 40 H 0.068 0.932 41 H 0.144 0.856 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.123 0.877 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.293 4.679 -6.261 10.691 hybrid contribution 0.561 -1.176 0.738 1.497 sum -6.733 3.503 -5.523 9.387 Atomic orbital electron populations 1.23870 0.94911 1.02547 0.99023 1.23359 0.97246 0.98409 1.01094 1.20779 0.93227 0.97386 0.87119 1.57331 1.28712 1.78414 1.16830 1.21110 0.98642 0.92634 0.83729 0.88603 1.22019 0.96975 0.99844 1.01329 1.22881 0.89155 0.95204 0.94561 1.87806 1.49427 1.26981 1.66747 1.22945 1.00594 0.82148 1.01713 1.01026 0.73014 0.74557 0.71660 1.93497 1.71355 1.83056 1.50222 1.93416 1.82052 1.83364 1.40735 1.30285 1.30364 1.23696 1.02042 1.20721 0.90931 0.95319 0.95187 1.20981 1.12809 0.93537 0.98898 1.21272 0.92802 0.99861 0.92468 1.21348 1.12323 0.94481 0.98559 1.17297 0.84656 0.92355 0.91195 1.20359 1.30898 1.09306 0.89915 0.86472 1.26551 0.95552 0.99141 0.94596 1.69587 1.36627 1.38755 0.99580 0.85890 0.79713 0.79305 0.78746 1.17494 1.17807 1.20869 0.88079 0.86819 0.89275 0.85582 0.90023 0.93346 0.92081 0.89949 0.90647 0.93369 0.93974 0.88007 0.93245 0.85603 0.84535 0.84635 0.87654 0.89371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 13.03 67.78 0.88 -3.26 16 2 C -0.18 -5.56 8.54 25.65 0.22 -5.34 16 3 C 0.14 4.36 5.44 85.63 0.47 4.83 16 4 N -0.98 -36.34 2.65 -497.41 -1.32 -37.65 16 5 C 0.14 5.20 2.08 44.99 0.09 5.29 16 6 H 0.10 4.13 5.19 -2.39 -0.01 4.12 16 7 C -0.14 -4.87 7.60 71.98 0.55 -4.32 16 8 C 0.06 1.73 5.73 71.98 0.41 2.15 16 9 O -0.39 -9.73 6.91 -148.98 -1.03 -10.76 16 10 C 0.02 0.39 11.01 113.37 1.25 1.63 16 11 S 2.70 120.71 5.06 -56.49 -0.29 120.43 16 12 O -0.99 -50.86 14.81 -128.00 -1.90 -52.75 16 13 O -1.01 -45.56 15.85 -128.00 -2.03 -47.59 16 14 C -0.77 -35.33 5.71 22.73 0.13 -35.20 16 15 C 0.00 -0.08 9.53 22.22 0.21 0.13 16 16 C -0.24 -9.01 10.05 22.46 0.23 -8.78 16 17 C -0.05 -1.75 10.02 22.22 0.22 -1.53 16 18 C -0.25 -11.03 6.80 22.73 0.15 -10.87 16 19 C 0.15 7.27 5.04 -21.29 -0.11 7.16 16 20 C -0.48 -24.44 7.42 23.46 0.17 -24.26 16 21 H 0.12 5.88 2.18 -2.91 -0.01 5.88 16 22 C 0.06 3.03 5.50 85.26 0.47 3.50 16 23 N -0.82 -41.91 13.93 21.83 0.30 -41.61 16 24 Si 0.94 41.26 24.47 68.60 1.68 42.94 16 25 H -0.25 -10.06 6.88 99.48 0.68 -9.37 16 26 H -0.25 -11.68 6.38 99.48 0.63 -11.05 16 27 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 28 H 0.10 2.33 8.06 -2.91 -0.02 2.31 16 29 H 0.11 2.42 7.84 -2.91 -0.02 2.40 16 30 H 0.09 3.15 7.79 -2.91 -0.02 3.13 16 31 H 0.13 3.48 4.82 -2.39 -0.01 3.47 16 32 H 0.08 2.58 7.15 -2.39 -0.02 2.57 16 33 H 0.05 1.92 6.85 -2.39 -0.02 1.90 16 34 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.08 2.46 5.35 -2.39 -0.01 2.45 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.10 1.38 8.14 -2.38 -0.02 1.37 16 40 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 41 H 0.13 4.78 7.33 -2.91 -0.02 4.75 16 42 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 43 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 44 H 0.11 4.58 4.84 -2.91 -0.01 4.57 16 45 H 0.30 13.71 8.30 -92.71 -0.77 12.94 16 Total: -1.00 -62.60 358.19 1.69 -60.91 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.91 Total: 34.96 kcal Atomic # 6 Polarization: -74.22 SS G_CDS: 5.35 Total: -68.87 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -1.01 Total: -79.26 kcal Atomic # 8 Polarization: -106.15 SS G_CDS: -4.95 Total: -111.11 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.68 Total: 42.94 kcal Atomic # 16 Polarization: 120.71 SS G_CDS: -0.29 Total: 120.43 kcal Total: -62.60 1.69 -60.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601465559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.049 kcal (2) G-P(sol) polarization free energy of solvation -62.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds