Wall clock time and date at job start Tue Mar 31 2020 22:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 119.99981 * 2 1 4 4 N 1.46495 * 109.47424 * 124.99864 * 3 2 1 5 5 C 1.46500 * 120.00030 * 266.70649 * 4 3 2 6 6 H 1.08997 * 109.47120 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46912 * 299.99742 * 5 4 3 8 8 C 1.53001 * 109.47414 * 59.99652 * 5 4 3 9 9 O 1.42901 * 109.46799 * 295.00497 * 8 5 4 10 10 C 1.42902 * 113.99863 * 179.97438 * 9 8 5 11 11 S 1.65601 * 120.00040 * 86.69941 * 4 3 2 12 12 O 1.42098 * 106.40284 * 347.57110 * 11 4 3 13 13 O 1.42101 * 106.40425 * 214.64508 * 11 4 3 14 14 C 1.76203 * 107.21342 * 101.10920 * 11 4 3 15 15 C 1.37641 * 120.13181 * 114.96314 * 14 11 4 16 16 C 1.38605 * 120.25043 * 180.31598 * 15 14 11 17 17 C 1.38663 * 120.50173 * 359.67703 * 16 15 14 18 18 C 1.37590 * 120.24845 * 359.97438 * 17 16 15 19 19 C 1.40695 * 120.12866 * 294.65320 * 14 11 4 20 20 C 1.41395 * 120.24267 * 359.97438 * 19 14 11 21 21 H 1.07998 * 120.00091 * 323.31885 * 20 19 14 22 22 C 1.39950 * 120.00337 * 143.31775 * 20 19 14 23 23 N 1.30816 * 120.00421 * 151.37165 * 22 20 19 24 24 Si 1.86804 * 119.99489 * 331.37154 * 22 20 19 25 25 H 1.48498 * 109.47054 * 269.54485 * 24 22 20 26 26 H 1.48503 * 109.47192 * 29.54759 * 24 22 20 27 27 H 1.48501 * 109.46910 * 149.54536 * 24 22 20 28 28 H 1.07990 * 119.99746 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.99715 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.00410 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47101 * 4.99064 * 3 2 1 32 32 H 1.09005 * 109.46628 * 244.99506 * 3 2 1 33 33 H 1.08998 * 109.47049 * 300.00135 * 7 5 4 34 34 H 1.09001 * 109.47260 * 59.99924 * 7 5 4 35 35 H 1.09000 * 109.47381 * 179.97438 * 7 5 4 36 36 H 1.08996 * 109.47187 * 54.99679 * 8 5 4 37 37 H 1.08994 * 109.47534 * 175.00516 * 8 5 4 38 38 H 1.09008 * 109.47011 * 59.99772 * 10 9 8 39 39 H 1.08997 * 109.47388 * 179.97438 * 10 9 8 40 40 H 1.09000 * 109.47039 * 300.00067 * 10 9 8 41 41 H 1.08007 * 119.87341 * 0.02562 * 15 14 11 42 42 H 1.08002 * 119.74881 * 179.69162 * 16 15 14 43 43 H 1.07999 * 119.87577 * 180.02562 * 17 16 15 44 44 H 1.08002 * 120.12941 * 180.02562 * 18 17 16 45 45 H 0.97003 * 120.00361 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5826 1.9307 2.4037 6 1 3.4008 1.8589 3.1202 7 6 2.2262 3.4022 2.1832 8 6 1.3614 1.1860 2.9468 9 8 0.2547 1.3780 2.0634 10 6 -0.9430 0.7197 2.4806 11 16 4.5100 0.6855 0.9722 12 8 4.5035 -0.0597 -0.2377 13 8 4.8387 0.1180 2.2329 14 6 5.6255 2.0268 0.7245 15 6 6.5906 2.3057 1.6654 16 6 7.4651 3.3642 1.4761 17 6 7.3833 4.1496 0.3362 18 6 6.4310 3.8848 -0.6210 19 6 5.5373 2.8130 -0.4390 20 6 4.5545 2.5316 -1.4158 21 1 4.2857 1.5082 -1.6323 22 6 3.9299 3.5791 -2.1023 23 7 3.4814 3.3901 -3.3165 24 14 3.7368 5.2475 -1.2844 25 1 2.4427 5.2957 -0.5577 26 1 4.8510 5.4610 -0.3262 27 1 3.7632 6.3121 -2.3194 28 1 -0.5399 -0.9352 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3586 2.1317 0.0894 32 1 2.6214 1.4025 -0.9314 33 1 3.0961 3.9328 1.7963 34 1 1.4081 3.4745 1.4665 35 1 1.9198 3.8476 3.1297 36 1 1.5875 0.1223 3.0200 37 1 1.1095 1.5727 3.9342 38 1 -1.2429 1.0964 3.4586 39 1 -1.7354 0.9145 1.7580 40 1 -0.7644 -0.3538 2.5439 41 1 6.6637 1.7002 2.5568 42 1 8.2161 3.5789 2.2220 43 1 8.0701 4.9716 0.1989 44 1 6.3693 4.4975 -1.5083 45 1 3.0489 4.1163 -3.7924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601465566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:28 Heat of formation + Delta-G solvation = -67.077477 kcal Electronic energy + Delta-G solvation = -30167.879397 eV Core-core repulsion = 26278.521034 eV Total energy + Delta-G solvation = -3889.358363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -38.55906 -37.80774 -36.40528 -35.93770 -34.87408 -33.84705 -33.41691 -30.69933 -30.03696 -29.92117 -27.23869 -26.01629 -25.41217 -24.59599 -21.95296 -21.15097 -20.61947 -19.64570 -18.07900 -17.70588 -17.28482 -16.34077 -15.98690 -15.83269 -15.43314 -15.26949 -14.88813 -14.42128 -14.26924 -13.83557 -13.39833 -13.38479 -13.12093 -12.92607 -12.76880 -12.56850 -12.26731 -12.13958 -11.99322 -11.79943 -11.48037 -11.30653 -11.24936 -11.11463 -11.04399 -10.98865 -10.78451 -10.77121 -10.57716 -10.39905 -10.10712 -10.03405 -9.42760 -9.36095 -9.30520 -8.67501 -8.41673 -8.14535 -7.68012 -7.21844 -4.81208 1.45132 2.13133 2.54250 2.86741 2.95937 3.06202 3.12324 3.81701 3.83313 4.04036 4.23734 4.70798 4.99398 5.09735 5.27911 5.32215 5.42260 5.48401 5.53137 5.55806 5.59952 5.70645 5.77436 5.84900 5.89104 5.92604 5.98494 6.16942 6.22471 6.25373 6.39789 6.50190 6.55953 6.66080 6.77254 6.86684 6.97786 7.13063 7.14240 7.18339 7.31216 7.36097 7.49335 7.52864 7.62676 7.87086 8.19684 8.37547 8.56734 9.75616 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.006566 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.537103 B = 4263.576310 C = 5055.002770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.154 4.154 3 C 0.151 3.849 4 N -0.978 5.978 5 C 0.157 3.843 6 H 0.101 0.899 7 C -0.160 4.160 8 C 0.057 3.943 9 O -0.369 6.369 10 C 0.034 3.966 11 S 2.700 3.300 12 O -0.964 6.964 13 O -0.998 6.998 14 C -0.770 4.770 15 C 0.008 3.992 16 C -0.253 4.253 17 C -0.058 4.058 18 C -0.201 4.201 19 C 0.166 3.834 20 C -0.477 4.477 21 H 0.133 0.867 22 C 0.103 3.897 23 N -0.767 5.767 24 Si 0.864 3.136 25 H -0.259 1.259 26 H -0.222 1.222 27 H -0.277 1.277 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.031 0.969 39 H 0.081 0.919 40 H 0.038 0.962 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.336 0.729 8.415 11.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.173 4.173 3 C 0.027 3.973 4 N -0.812 5.812 5 C 0.050 3.950 6 H 0.119 0.881 7 C -0.219 4.219 8 C -0.021 4.021 9 O -0.288 6.288 10 C -0.063 4.063 11 S 2.799 3.201 12 O -0.955 6.955 13 O -0.989 6.989 14 C -0.863 4.863 15 C -0.012 4.012 16 C -0.273 4.273 17 C -0.076 4.076 18 C -0.221 4.221 19 C 0.162 3.838 20 C -0.503 4.503 21 H 0.150 0.850 22 C -0.122 4.122 23 N -0.387 5.387 24 Si 0.686 3.314 25 H -0.184 1.184 26 H -0.144 1.144 27 H -0.202 1.202 28 H 0.100 0.900 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.130 0.870 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.100 0.900 40 H 0.056 0.944 41 H 0.129 0.871 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.119 0.881 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.282 -0.030 8.008 10.824 hybrid contribution 0.038 1.365 0.312 1.400 sum -7.244 1.335 8.321 11.113 Atomic orbital electron populations 1.23660 0.95869 1.00449 1.01819 1.23338 0.96255 0.99103 0.98640 1.20596 0.92507 0.94841 0.89382 1.57453 1.29912 1.76115 1.17757 1.20782 0.95654 0.93110 0.85483 0.88072 1.22103 1.02943 0.94914 1.01899 1.22837 0.87281 0.99697 0.92330 1.88077 1.18939 1.73633 1.48132 1.22636 0.88002 0.96522 0.99106 1.01194 0.72250 0.74191 0.72505 1.93500 1.86105 1.69758 1.46115 1.93437 1.84048 1.76994 1.44434 1.30035 1.21661 1.29391 1.05250 1.20358 0.91806 0.93901 0.95167 1.20492 1.05025 1.01412 1.00410 1.20840 0.96411 0.96700 0.93677 1.21249 0.98657 1.02370 0.99833 1.17012 0.90164 0.88563 0.88111 1.20227 1.17815 0.97982 1.14312 0.85029 1.26112 0.92698 1.00648 0.92782 1.69802 1.24785 1.35668 1.08482 0.86900 0.81912 0.80563 0.82046 1.18394 1.14429 1.20184 0.90015 0.88315 0.88368 0.89860 0.86982 0.91812 0.91124 0.92459 0.92936 0.93068 0.95084 0.90025 0.94351 0.87141 0.88333 0.88502 0.88064 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 10.28 29.01 0.30 -2.23 16 2 C -0.15 -2.59 8.76 -36.02 -0.32 -2.91 16 3 C 0.15 2.80 4.46 -5.19 -0.02 2.78 16 4 N -0.98 -18.17 2.63 -108.57 -0.29 -18.45 16 5 C 0.16 2.46 3.11 -67.93 -0.21 2.25 16 6 H 0.10 1.55 7.24 -51.93 -0.38 1.17 16 7 C -0.16 -2.40 8.98 37.16 0.33 -2.07 16 8 C 0.06 0.77 5.35 37.16 0.20 0.96 16 9 O -0.37 -4.89 4.87 -35.23 -0.17 -5.06 16 10 C 0.03 0.35 8.92 101.05 0.90 1.25 16 11 S 2.70 58.65 4.99 -107.50 -0.54 58.12 16 12 O -0.96 -23.52 14.62 -57.17 -0.84 -24.36 16 13 O -1.00 -22.10 15.93 -57.17 -0.91 -23.01 16 14 C -0.77 -17.54 5.96 -38.87 -0.23 -17.77 16 15 C 0.01 0.16 9.53 -39.66 -0.38 -0.22 16 16 C -0.25 -5.12 10.05 -39.29 -0.39 -5.51 16 17 C -0.06 -1.18 10.02 -39.66 -0.40 -1.58 16 18 C -0.20 -4.56 6.77 -38.87 -0.26 -4.82 16 19 C 0.17 3.97 4.83 -106.82 -0.52 3.46 16 20 C -0.48 -11.72 6.58 -37.74 -0.25 -11.97 16 21 H 0.13 3.51 4.64 -52.49 -0.24 3.26 16 22 C 0.10 2.40 5.17 -17.34 -0.09 2.31 16 23 N -0.77 -18.32 13.93 55.55 0.77 -17.55 16 24 Si 0.86 17.66 26.57 -169.99 -4.52 13.15 16 25 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 26 H -0.22 -4.60 5.39 56.52 0.30 -4.29 16 27 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 28 H 0.08 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.10 1.34 6.39 -52.49 -0.34 1.00 16 30 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.08 1.47 5.33 -51.93 -0.28 1.19 16 32 H 0.11 2.41 4.50 -51.93 -0.23 2.18 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.10 6.08 -51.93 -0.32 0.78 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.03 0.28 8.14 -51.92 -0.42 -0.15 16 39 H 0.08 0.74 7.48 -51.93 -0.39 0.35 16 40 H 0.04 0.38 7.95 -51.93 -0.41 -0.03 16 41 H 0.11 2.16 7.33 -52.48 -0.38 1.78 16 42 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 43 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 44 H 0.10 2.22 6.48 -52.49 -0.34 1.88 16 45 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 LS Contribution 356.57 15.07 5.37 5.37 Total: -1.00 -28.05 356.57 -8.79 -36.85 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -6.34 Total: 11.02 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: -1.34 Total: -36.07 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.49 Total: -36.00 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -1.92 Total: -52.43 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -4.52 Total: 13.15 kcal Atomic # 16 Polarization: 58.65 SS G_CDS: -0.54 Total: 58.12 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.05 -8.79 -36.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601465566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.231 kcal (2) G-P(sol) polarization free energy of solvation -28.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds