Wall clock time and date at job start Tue Mar 31 2020 23:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46495 * 119.99818 * 2 1 4 4 H 1.09002 * 109.46929 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47259 * 60.00270 * 3 2 1 6 6 C 1.53005 * 109.47432 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.46838 * 59.99769 * 6 5 3 8 8 C 1.52998 * 109.47298 * 300.00314 * 7 6 5 9 9 C 1.52999 * 109.47445 * 299.99902 * 3 2 1 10 10 H 1.09002 * 109.47106 * 60.00049 * 9 3 2 11 11 O 1.42899 * 109.47102 * 300.00297 * 9 3 2 12 12 S 1.65596 * 119.99983 * 179.97438 * 2 1 3 13 13 O 1.42100 * 106.40327 * 156.45675 * 12 2 1 14 14 O 1.42109 * 106.40162 * 23.53910 * 12 2 1 15 15 C 1.76199 * 107.21986 * 270.00022 * 12 2 1 16 16 C 1.38655 * 119.87652 * 270.02279 * 15 12 2 17 17 C 1.38614 * 120.50117 * 179.97438 * 16 15 12 18 18 C 1.37633 * 120.24891 * 0.02562 * 17 16 15 19 19 C 1.40707 * 119.74749 * 359.74473 * 18 17 16 20 20 C 1.41387 * 120.24933 * 180.27694 * 19 18 17 21 21 H 1.08004 * 119.99845 * 330.44652 * 20 19 18 22 22 C 1.39944 * 120.00241 * 150.44149 * 20 19 18 23 23 N 1.30820 * 120.00163 * 161.51911 * 22 20 19 24 24 Si 1.86805 * 119.99811 * 341.51625 * 22 20 19 25 25 H 1.48498 * 109.46722 * 95.40970 * 24 22 20 26 26 H 1.48501 * 109.47136 * 215.41076 * 24 22 20 27 27 H 1.48503 * 109.47111 * 335.40752 * 24 22 20 28 28 C 1.37605 * 119.87593 * 90.00080 * 15 12 2 29 29 H 1.09006 * 109.46905 * 269.99800 * 1 2 3 30 30 H 1.08994 * 109.47175 * 29.99910 * 1 2 3 31 31 H 1.08998 * 109.47142 * 150.00390 * 1 2 3 32 32 H 1.08996 * 109.47181 * 299.99647 * 5 3 2 33 33 H 1.09004 * 109.47408 * 59.99934 * 5 3 2 34 34 H 1.08996 * 109.47381 * 179.97438 * 6 5 3 35 35 H 1.08996 * 109.46865 * 300.00105 * 6 5 3 36 36 H 1.09002 * 109.47305 * 60.00140 * 7 6 5 37 37 H 1.08996 * 109.47087 * 180.02562 * 7 6 5 38 38 H 1.08998 * 109.47261 * 180.02562 * 8 7 6 39 39 H 1.09002 * 109.46801 * 300.00135 * 8 7 6 40 40 H 0.96696 * 113.99961 * 179.97438 * 11 9 3 41 41 H 1.07994 * 119.74650 * 359.97438 * 16 15 12 42 42 H 1.07999 * 119.87412 * 179.97438 * 17 16 15 43 43 H 1.08006 * 120.12904 * 180.02562 * 18 17 16 44 44 H 0.97001 * 119.99807 * 179.97438 * 23 22 20 45 45 H 1.07999 * 120.12190 * 359.97438 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2692 1.0695 0.0005 5 6 1.8279 2.0710 1.2492 6 6 2.5934 3.3958 1.2496 7 6 2.2242 4.1983 0.0003 8 6 2.5938 3.3961 -1.2489 9 6 1.8279 2.0710 -1.2492 10 1 0.7563 2.2702 -1.2492 11 8 2.1731 1.3217 -2.4160 12 16 2.2930 -1.4341 0.0006 13 8 3.5759 -1.1570 -0.5440 14 8 1.4113 -2.4068 -0.5434 15 6 2.5538 -1.8851 1.6839 16 6 3.6971 -1.4603 2.3435 17 6 3.9150 -1.8071 3.6678 18 6 2.9968 -2.5789 4.3426 19 6 1.8306 -3.0116 3.6848 20 6 0.8774 -3.8000 4.3695 21 1 1.1929 -4.4587 5.1652 22 6 -0.4748 -3.7267 4.0165 23 7 -1.2960 -4.6814 4.3709 24 14 -1.1070 -2.2657 3.0392 25 1 -1.1225 -2.6063 1.5939 26 1 -2.4839 -1.9312 3.4838 27 1 -0.2173 -1.0979 3.2631 28 6 1.6220 -2.6571 2.3389 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 0.7563 2.2702 1.2493 33 1 2.0913 1.4994 2.1393 34 1 2.3297 3.9675 2.1394 35 1 3.6649 3.1962 1.2498 36 1 1.1526 4.3979 0.0001 37 1 2.7699 5.1419 0.0003 38 1 2.3313 3.9680 -2.1389 39 1 3.6654 3.1965 -1.2487 40 1 1.9660 1.7704 -3.2471 41 1 4.4231 -0.8548 1.8216 42 1 4.8092 -1.4711 4.1717 43 1 3.1684 -2.8476 5.3745 44 1 -2.2333 -4.6304 4.1265 45 1 0.7319 -2.9862 1.8233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601484678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:53 Heat of formation + Delta-G solvation = -114.355435 kcal Electronic energy + Delta-G solvation = -29295.046610 eV Core-core repulsion = 25403.638120 eV Total energy + Delta-G solvation = -3891.408489 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.55120 -37.91397 -36.71107 -35.79961 -35.30312 -35.03614 -33.76392 -30.70503 -30.21281 -30.18536 -29.11154 -26.10290 -25.35479 -22.84872 -22.21087 -22.03081 -21.21221 -19.86124 -18.60616 -17.87222 -17.37839 -17.09601 -16.66701 -16.22960 -15.23768 -15.01957 -14.78155 -14.64112 -14.44140 -14.12930 -13.90003 -13.65394 -13.42669 -13.22861 -12.91428 -12.86556 -12.47839 -12.39512 -12.22251 -11.96934 -11.83383 -11.62164 -11.49335 -11.47071 -11.28106 -11.18060 -10.97346 -10.90135 -10.84593 -10.82571 -10.45076 -10.29997 -10.02301 -9.98265 -9.69191 -9.29256 -8.78643 -8.30561 -7.83979 -7.07995 -4.63797 0.92398 1.91143 2.45541 3.00231 3.03677 3.13624 3.36499 3.84457 4.00297 4.19309 4.33229 4.51016 4.55644 4.76539 4.85590 4.93002 4.99997 5.12177 5.15185 5.23146 5.26630 5.27919 5.49457 5.61502 5.68458 5.72333 5.77996 5.81736 5.89856 5.92942 5.93551 5.99055 6.07462 6.15547 6.26212 6.34259 6.40059 6.55102 6.79105 6.93200 7.11056 7.16453 7.41173 7.53972 7.59170 7.87110 8.16355 8.43339 8.62343 9.93932 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014542 B = 0.004719 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.048525 B = 5931.684733 C = 6071.954719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.991 5.991 3 C 0.160 3.840 4 H 0.107 0.893 5 C -0.132 4.132 6 C -0.120 4.120 7 C -0.118 4.118 8 C -0.151 4.151 9 C 0.098 3.902 10 H 0.059 0.941 11 O -0.555 6.555 12 S 2.683 3.317 13 O -0.961 6.961 14 O -0.965 6.965 15 C -0.621 4.621 16 C -0.151 4.151 17 C -0.100 4.100 18 C -0.164 4.164 19 C 0.075 3.925 20 C -0.447 4.447 21 H 0.095 0.905 22 C 0.086 3.914 23 N -0.799 5.799 24 Si 0.879 3.121 25 H -0.252 1.252 26 H -0.281 1.281 27 H -0.239 1.239 28 C -0.139 4.139 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.373 0.627 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.288 0.712 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 17.649 -7.860 19.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.826 5.826 3 C 0.054 3.946 4 H 0.125 0.875 5 C -0.171 4.171 6 C -0.159 4.159 7 C -0.156 4.156 8 C -0.189 4.189 9 C 0.038 3.962 10 H 0.077 0.923 11 O -0.360 6.360 12 S 2.779 3.221 13 O -0.952 6.952 14 O -0.956 6.956 15 C -0.712 4.712 16 C -0.172 4.172 17 C -0.119 4.119 18 C -0.184 4.184 19 C 0.071 3.929 20 C -0.475 4.475 21 H 0.113 0.887 22 C -0.134 4.134 23 N -0.422 5.422 24 Si 0.704 3.296 25 H -0.177 1.177 26 H -0.208 1.208 27 H -0.162 1.162 28 C -0.160 4.160 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.220 0.780 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.099 0.901 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.339 16.571 -8.128 18.605 hybrid contribution -0.760 0.938 0.097 1.211 sum 1.579 17.510 -8.031 19.328 Atomic orbital electron populations 1.21594 0.79051 1.03893 1.01868 1.57392 1.14740 1.20668 1.89821 1.20859 0.97601 0.83219 0.92968 0.87517 1.21961 1.01207 0.96067 0.97899 1.21561 1.00795 0.95591 0.97905 1.21517 1.01497 0.98366 0.94188 1.22291 1.01980 0.96069 0.98610 1.22145 0.97677 0.90201 0.86223 0.92314 1.86653 1.86947 1.46961 1.15432 1.02000 0.73010 0.72140 0.74919 1.93510 1.39923 1.84265 1.77472 1.93527 1.66250 1.58120 1.77660 1.30076 1.04467 1.12957 1.23676 1.20075 0.96543 1.05167 0.95457 1.20751 0.98053 0.98763 0.94357 1.21304 0.96941 1.01406 0.98730 1.17787 0.93394 0.90813 0.90882 1.19495 0.90807 1.20110 1.17045 0.88683 1.26127 0.97091 0.96573 0.93624 1.69669 1.06283 1.29551 1.36699 0.86812 0.78368 0.83427 0.81039 1.17730 1.20818 1.16237 1.20804 0.98441 1.01678 0.95061 0.92976 0.90873 0.89795 0.91122 0.89958 0.91253 0.91339 0.91829 0.91576 0.91516 0.90639 0.78047 0.87174 0.87799 0.87448 0.90149 0.86693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 9.72 59.85 0.58 1.78 16 2 N -0.99 -16.45 2.94 -114.61 -0.34 -16.79 16 3 C 0.16 2.20 2.20 -67.93 -0.15 2.05 16 4 H 0.11 1.60 6.91 -51.93 -0.36 1.24 16 5 C -0.13 -1.53 5.20 -26.73 -0.14 -1.67 16 6 C -0.12 -1.09 5.92 -26.73 -0.16 -1.24 16 7 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 8 C -0.15 -1.29 5.55 -26.71 -0.15 -1.43 16 9 C 0.10 1.09 2.78 -26.71 -0.07 1.01 16 10 H 0.06 0.58 6.66 -51.93 -0.35 0.23 16 11 O -0.56 -6.96 13.18 -35.23 -0.46 -7.43 16 12 S 2.68 55.80 5.68 -107.50 -0.61 55.19 16 13 O -0.96 -20.85 15.83 -57.17 -0.91 -21.75 16 14 O -0.97 -22.49 15.87 -57.17 -0.91 -23.40 16 15 C -0.62 -13.90 5.97 -39.66 -0.24 -14.14 16 16 C -0.15 -3.14 9.53 -39.29 -0.37 -3.52 16 17 C -0.10 -2.02 10.02 -39.66 -0.40 -2.42 16 18 C -0.16 -3.67 9.80 -38.87 -0.38 -4.05 16 19 C 0.08 1.89 5.10 -106.83 -0.55 1.34 16 20 C -0.45 -11.87 9.57 -37.75 -0.36 -12.23 16 21 H 0.10 2.60 8.06 -52.48 -0.42 2.18 16 22 C 0.09 2.23 5.40 -17.34 -0.09 2.14 16 23 N -0.80 -21.01 13.93 55.55 0.77 -20.24 16 24 Si 0.88 19.78 23.68 -169.99 -4.03 15.75 16 25 H -0.25 -5.60 6.70 56.52 0.38 -5.22 16 26 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.24 -5.25 6.88 56.52 0.39 -4.86 16 28 C -0.14 -3.42 6.65 -38.87 -0.26 -3.68 16 29 H 0.05 0.76 7.27 -51.93 -0.38 0.39 16 30 H 0.07 0.82 6.43 -51.93 -0.33 0.48 16 31 H 0.08 1.33 7.02 -51.93 -0.36 0.96 16 32 H 0.07 0.75 7.67 -51.93 -0.40 0.36 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.37 2.82 9.08 45.56 0.41 3.23 16 41 H 0.11 2.05 7.60 -52.49 -0.40 1.65 16 42 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.11 2.20 8.06 -52.48 -0.42 1.78 16 44 H 0.29 6.84 8.30 -40.82 -0.34 6.50 16 45 H 0.12 2.90 4.29 -52.49 -0.23 2.68 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -31.95 363.52 -9.68 -41.63 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.79 Total: 8.67 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: -2.89 Total: -37.12 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.44 Total: -37.03 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -2.28 Total: -52.58 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.03 Total: 15.75 kcal Atomic # 16 Polarization: 55.80 SS G_CDS: -0.61 Total: 55.19 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.95 -9.68 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601484678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.723 kcal (2) G-P(sol) polarization free energy of solvation -31.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds