Wall clock time and date at job start Tue Mar 31 2020 23:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 117.00130 * 2 1 4 4 C 1.38763 * 120.17727 * 0.02562 * 3 2 1 5 5 C 1.37825 * 119.71311 * 180.02562 * 4 3 2 6 6 C 1.38958 * 120.63262 * 359.97438 * 5 4 3 7 7 C 1.37712 * 119.75907 * 359.81336 * 6 5 4 8 8 C 1.38425 * 120.17474 * 179.97438 * 3 2 1 9 9 C 1.50652 * 122.56432 * 180.40978 * 7 6 5 10 10 C 1.52723 * 110.60401 * 342.37104 * 9 7 6 11 11 C 1.53330 * 108.37144 * 51.07521 * 10 9 7 12 12 H 1.09000 * 109.68052 * 49.85966 * 11 10 9 13 13 N 1.46492 * 109.68199 * 170.37887 * 11 10 9 14 14 S 1.65606 * 120.00135 * 214.48309 * 13 11 10 15 15 O 1.42100 * 104.27450 * 308.93172 * 14 13 11 16 16 O 1.42093 * 104.28025 * 181.07088 * 14 13 11 17 17 C 1.81403 * 104.44724 * 64.99830 * 14 13 11 18 18 C 1.53001 * 109.47153 * 180.02562 * 17 14 13 19 19 C 1.50694 * 109.47168 * 180.02562 * 18 17 14 20 20 H 1.08000 * 120.00563 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 C 1.50649 * 117.69437 * 179.76833 * 6 5 4 28 28 H 1.09000 * 109.47386 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47464 * 300.00584 * 1 2 3 30 30 H 1.09010 * 109.46701 * 60.00557 * 1 2 3 31 31 H 1.08002 * 120.14058 * 0.05254 * 4 3 2 32 32 H 1.08002 * 119.68386 * 179.97438 * 5 4 3 33 33 H 1.08004 * 119.74862 * 359.97438 * 8 3 2 34 34 H 1.08995 * 109.25219 * 102.63811 * 9 7 6 35 35 H 1.09002 * 109.25244 * 222.06977 * 9 7 6 36 36 H 1.08998 * 109.66381 * 291.36864 * 10 9 7 37 37 H 1.09003 * 109.70792 * 170.80531 * 10 9 7 38 38 H 0.97001 * 120.00007 * 34.48122 * 13 11 10 39 39 H 1.09002 * 109.46959 * 60.00458 * 17 14 13 40 40 H 1.08998 * 109.47334 * 299.99936 * 17 14 13 41 41 H 1.09007 * 109.46922 * 59.99828 * 18 17 14 42 42 H 1.09003 * 109.46836 * 300.00583 * 18 17 14 43 43 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.25615 * 42.20064 * 27 6 5 45 45 H 1.09004 * 109.21953 * 282.76303 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2938 2.3770 0.0005 5 6 1.9295 3.5999 0.0000 6 6 3.3170 3.6766 -0.0005 7 6 4.0655 2.5207 0.0033 8 6 3.4281 1.2875 0.0005 9 6 5.5720 2.5303 0.0121 10 6 6.1033 3.8962 -0.4172 11 6 5.4058 4.9721 0.4236 12 1 5.4649 4.7083 1.4796 13 7 6.0524 6.2677 0.2018 14 16 6.1701 7.3578 1.4430 15 8 4.8461 7.4560 1.9497 16 8 6.8175 8.4815 0.8624 17 6 7.2561 6.5516 2.6519 18 6 7.4443 7.4703 3.8608 19 6 8.3469 6.8010 4.8647 20 1 8.7469 5.8187 4.6609 21 6 8.6623 7.4426 6.0438 22 7 8.1757 8.6389 6.2919 23 14 9.7807 6.6124 7.2885 24 1 9.9634 7.5042 8.4619 25 1 9.1681 5.3335 7.7289 26 1 11.1003 6.3401 6.6642 27 6 3.9423 5.0472 -0.0065 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.2150 2.3264 0.0018 32 1 1.3436 4.5072 0.0000 33 1 4.0151 0.3809 0.0014 34 1 5.9269 2.3070 1.0182 35 1 5.9402 1.7689 -0.6756 36 1 5.8874 4.0584 -1.4732 37 1 7.1796 3.9408 -0.2509 38 1 6.4117 6.4872 -0.6721 39 1 8.2244 6.3511 2.1933 40 1 6.8060 5.6132 2.9757 41 1 6.4757 7.6706 4.3191 42 1 7.8941 8.4090 3.5372 43 1 8.3973 9.0901 7.1215 44 1 3.3982 5.6936 0.6820 45 1 3.8843 5.4637 -1.0122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612143658.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:40 Heat of formation + Delta-G solvation = -107.837972 kcal Electronic energy + Delta-G solvation = -27047.409275 eV Core-core repulsion = 23156.283404 eV Total energy + Delta-G solvation = -3891.125871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.65945 -38.96849 -36.67848 -36.30533 -35.41407 -33.89120 -33.43574 -31.99660 -31.16177 -29.72097 -28.64877 -26.83947 -25.60292 -23.84354 -22.43169 -22.40936 -21.69442 -19.89470 -18.91304 -17.96427 -17.38677 -16.77666 -16.43039 -16.26602 -15.98654 -15.49623 -15.31472 -14.97506 -14.72487 -14.55183 -14.09573 -13.96495 -13.83772 -13.50477 -13.28770 -13.02876 -12.56391 -12.51132 -12.42266 -12.18194 -11.96896 -11.75921 -11.57996 -11.50883 -11.45967 -11.30396 -11.06291 -10.96812 -10.93954 -10.79436 -10.71370 -10.40925 -10.35938 -9.79067 -9.50137 -9.04060 -8.94621 -8.49774 -8.19948 -6.12139 -4.17720 0.79944 1.13073 1.25265 3.00019 3.12562 3.27407 3.32277 3.33990 3.52701 4.23039 4.37346 4.44435 4.52040 4.58688 4.63688 4.77490 4.82362 4.82708 4.86085 4.93366 5.01382 5.13134 5.15700 5.23070 5.32954 5.33775 5.36485 5.52521 5.65951 5.69252 5.73087 5.78201 5.81942 5.88026 6.03831 6.11494 6.17698 6.28337 6.47097 6.49399 6.63507 7.10606 7.17053 7.30314 7.36675 7.80609 8.17809 8.85432 9.46938 10.98871 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013366 B = 0.002670 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.308198 B =10486.035443 C =11502.496936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.207 4.207 5 C -0.077 4.077 6 C -0.103 4.103 7 C -0.040 4.040 8 C -0.153 4.153 9 C -0.081 4.081 10 C -0.125 4.125 11 C 0.155 3.845 12 H 0.090 0.910 13 N -1.122 6.122 14 S 2.591 3.409 15 O -0.965 6.965 16 O -0.968 6.968 17 C -0.590 4.590 18 C 0.028 3.972 19 C -0.521 4.521 20 H 0.061 0.939 21 C 0.058 3.942 22 N -0.891 5.891 23 Si 0.900 3.100 24 H -0.285 1.285 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.096 4.096 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.412 0.588 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.266 0.734 44 H 0.092 0.908 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.909 -15.928 -16.609 25.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.075 3.925 4 C -0.226 4.226 5 C -0.095 4.095 6 C -0.104 4.104 7 C -0.040 4.040 8 C -0.172 4.172 9 C -0.119 4.119 10 C -0.164 4.164 11 C 0.047 3.953 12 H 0.108 0.892 13 N -0.878 5.878 14 S 2.689 3.311 15 O -0.954 6.954 16 O -0.959 6.959 17 C -0.724 4.724 18 C -0.011 4.011 19 C -0.560 4.560 20 H 0.079 0.921 21 C -0.145 4.145 22 N -0.529 5.529 23 Si 0.727 3.273 24 H -0.211 1.211 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.135 4.135 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.246 0.754 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.075 0.925 44 H 0.111 0.889 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.361 -15.142 -16.298 25.450 hybrid contribution 0.703 -0.776 0.544 1.180 sum -11.658 -15.918 -15.754 25.249 Atomic orbital electron populations 1.23035 0.78502 1.03795 1.01364 1.86051 1.21287 1.27068 1.88962 1.18890 0.92341 0.84062 0.97183 1.21145 0.99906 0.92355 1.09175 1.20982 0.93942 0.97242 0.97359 1.19507 0.93217 0.94489 1.03187 1.19424 0.95557 0.91434 0.97566 1.20353 0.91315 0.98086 1.07407 1.20498 0.90479 0.97860 1.03026 1.21887 1.00737 0.93435 1.00361 1.20667 0.91547 0.82665 1.00388 0.89222 1.55900 1.73993 1.30448 1.27427 1.05603 0.76187 0.74274 0.75063 1.93544 1.35755 1.85616 1.80528 1.93552 1.77874 1.48432 1.76002 1.30457 1.14157 1.12918 1.14837 1.18952 0.99089 0.93560 0.89452 1.20964 1.29658 1.03250 1.02137 0.92099 1.25071 0.96225 0.94946 0.98249 1.69946 1.44190 1.13239 1.25482 0.86531 0.80944 0.79289 0.80516 1.21086 1.20066 1.20086 1.20986 0.95655 0.93605 1.03232 0.88363 0.92624 0.92747 0.85589 0.85618 0.85344 0.89648 0.89982 0.90842 0.90051 0.75435 0.86063 0.86395 0.94829 0.94867 0.92474 0.88943 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.82 101.05 0.99 1.16 16 2 O -0.32 -3.20 10.50 -19.42 -0.20 -3.41 16 3 C 0.12 1.28 6.68 -39.32 -0.26 1.02 16 4 C -0.21 -2.05 9.04 -39.54 -0.36 -2.41 16 5 C -0.08 -0.81 9.60 -39.47 -0.38 -1.19 16 6 C -0.10 -1.14 5.74 -104.57 -0.60 -1.74 16 7 C -0.04 -0.41 5.74 -104.62 -0.60 -1.01 16 8 C -0.15 -1.60 9.55 -39.30 -0.38 -1.98 16 9 C -0.08 -0.68 5.67 -28.05 -0.16 -0.84 16 10 C -0.13 -1.07 5.52 -26.70 -0.15 -1.21 16 11 C 0.16 1.72 2.58 -67.91 -0.17 1.55 16 12 H 0.09 1.03 7.13 -51.93 -0.37 0.66 16 13 N -1.12 -13.60 5.38 -4.87 -0.03 -13.62 16 14 S 2.59 44.74 5.38 -107.50 -0.58 44.16 16 15 O -0.96 -19.30 17.35 -57.54 -1.00 -20.30 16 16 O -0.97 -19.69 18.08 -57.54 -1.04 -20.73 16 17 C -0.59 -11.00 5.90 37.16 0.22 -10.78 16 18 C 0.03 0.72 4.98 -27.89 -0.14 0.58 16 19 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 20 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 23 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 C -0.10 -1.09 5.28 -28.05 -0.15 -1.23 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.31 7.67 -51.93 -0.40 -0.09 16 30 H 0.05 0.28 7.67 -51.92 -0.40 -0.12 16 31 H 0.13 0.97 6.33 -52.49 -0.33 0.63 16 32 H 0.13 1.14 8.05 -52.49 -0.42 0.71 16 33 H 0.13 1.17 8.05 -52.48 -0.42 0.75 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 36 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.41 4.07 8.80 -34.47 -0.30 3.76 16 39 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 40 H 0.12 1.96 7.45 -51.93 -0.39 1.57 16 41 H 0.03 0.90 8.14 -51.92 -0.42 0.47 16 42 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.09 1.20 7.66 -51.93 -0.40 0.80 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -35.69 379.57 -10.73 -46.42 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.77 Total: 2.51 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: -2.54 Total: -31.15 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.71 Total: -39.35 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -2.24 Total: -44.44 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 44.74 SS G_CDS: -0.58 Total: 44.16 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.69 -10.73 -46.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612143658.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.421 kcal (2) G-P(sol) polarization free energy of solvation -35.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds