Wall clock time and date at job start Tue Mar 31 2020 23:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 117.00130 * 2 1 4 4 C 1.38763 * 120.17727 * 0.02562 * 3 2 1 5 5 C 1.37825 * 119.71311 * 180.02562 * 4 3 2 6 6 C 1.38958 * 120.63262 * 359.97438 * 5 4 3 7 7 C 1.37712 * 119.75907 * 359.81336 * 6 5 4 8 8 C 1.38425 * 120.17474 * 179.97438 * 3 2 1 9 9 C 1.50652 * 122.56432 * 180.40978 * 7 6 5 10 10 C 1.52723 * 110.60401 * 342.37104 * 9 7 6 11 11 C 1.53330 * 108.37144 * 51.07521 * 10 9 7 12 12 H 1.09000 * 109.68052 * 49.85966 * 11 10 9 13 13 N 1.46492 * 109.68199 * 170.37887 * 11 10 9 14 14 S 1.65606 * 120.00135 * 214.48309 * 13 11 10 15 15 O 1.42100 * 104.27450 * 308.93172 * 14 13 11 16 16 O 1.42093 * 104.28025 * 181.07088 * 14 13 11 17 17 C 1.81403 * 104.44724 * 64.99830 * 14 13 11 18 18 C 1.53001 * 109.47153 * 180.02562 * 17 14 13 19 19 C 1.50694 * 109.47168 * 180.02562 * 18 17 14 20 20 H 1.08000 * 120.00563 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 C 1.50649 * 117.69437 * 179.76833 * 6 5 4 28 28 H 1.09000 * 109.47386 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47464 * 300.00584 * 1 2 3 30 30 H 1.09010 * 109.46701 * 60.00557 * 1 2 3 31 31 H 1.08002 * 120.14058 * 0.05254 * 4 3 2 32 32 H 1.08002 * 119.68386 * 179.97438 * 5 4 3 33 33 H 1.08004 * 119.74862 * 359.97438 * 8 3 2 34 34 H 1.08995 * 109.25219 * 102.63811 * 9 7 6 35 35 H 1.09002 * 109.25244 * 222.06977 * 9 7 6 36 36 H 1.08998 * 109.66381 * 291.36864 * 10 9 7 37 37 H 1.09003 * 109.70792 * 170.80531 * 10 9 7 38 38 H 0.97001 * 120.00007 * 34.48122 * 13 11 10 39 39 H 1.09002 * 109.46959 * 60.00458 * 17 14 13 40 40 H 1.08998 * 109.47334 * 299.99936 * 17 14 13 41 41 H 1.09007 * 109.46922 * 59.99828 * 18 17 14 42 42 H 1.09003 * 109.46836 * 300.00583 * 18 17 14 43 43 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.25615 * 42.20064 * 27 6 5 45 45 H 1.09004 * 109.21953 * 282.76303 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2938 2.3770 0.0005 5 6 1.9295 3.5999 0.0000 6 6 3.3170 3.6766 -0.0005 7 6 4.0655 2.5207 0.0033 8 6 3.4281 1.2875 0.0005 9 6 5.5720 2.5303 0.0121 10 6 6.1033 3.8962 -0.4172 11 6 5.4058 4.9721 0.4236 12 1 5.4649 4.7083 1.4796 13 7 6.0524 6.2677 0.2018 14 16 6.1701 7.3578 1.4430 15 8 4.8461 7.4560 1.9497 16 8 6.8175 8.4815 0.8624 17 6 7.2561 6.5516 2.6519 18 6 7.4443 7.4703 3.8608 19 6 8.3469 6.8010 4.8647 20 1 8.7469 5.8187 4.6609 21 6 8.6623 7.4426 6.0438 22 7 8.1757 8.6389 6.2919 23 14 9.7807 6.6124 7.2885 24 1 9.9634 7.5042 8.4619 25 1 9.1681 5.3335 7.7289 26 1 11.1003 6.3401 6.6642 27 6 3.9423 5.0472 -0.0065 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.2150 2.3264 0.0018 32 1 1.3436 4.5072 0.0000 33 1 4.0151 0.3809 0.0014 34 1 5.9269 2.3070 1.0182 35 1 5.9402 1.7689 -0.6756 36 1 5.8874 4.0584 -1.4732 37 1 7.1796 3.9408 -0.2509 38 1 6.4117 6.4872 -0.6721 39 1 8.2244 6.3511 2.1933 40 1 6.8060 5.6132 2.9757 41 1 6.4757 7.6706 4.3191 42 1 7.8941 8.4090 3.5372 43 1 8.3973 9.0901 7.1215 44 1 3.3982 5.6936 0.6820 45 1 3.8843 5.4637 -1.0122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612143658.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:39 Heat of formation + Delta-G solvation = -132.733581 kcal Electronic energy + Delta-G solvation = -27048.488829 eV Core-core repulsion = 23156.283404 eV Total energy + Delta-G solvation = -3892.205426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.39508 -39.70786 -38.11774 -37.25699 -36.94134 -35.87554 -34.24139 -33.10908 -32.84055 -30.44972 -29.37356 -27.58260 -27.48723 -24.59110 -23.59728 -23.21597 -23.18389 -20.71550 -20.23191 -19.09544 -18.63944 -18.12984 -17.64207 -17.15506 -16.91332 -16.63504 -16.53448 -16.48851 -15.88272 -15.63344 -15.10633 -14.87040 -14.75512 -14.56465 -14.44522 -14.12271 -13.85681 -13.71389 -13.31577 -13.18395 -13.10205 -13.08175 -13.01935 -12.89628 -12.78685 -12.74412 -12.24460 -12.22157 -12.12737 -12.03411 -11.75926 -11.64017 -11.58130 -11.49113 -11.09839 -10.62581 -10.34829 -9.68812 -8.96785 -8.24718 -6.38513 -0.64054 0.37987 0.46652 1.41640 1.45065 1.53072 1.87064 2.39073 2.39439 2.75978 2.84092 3.08742 3.30947 3.67879 3.73148 3.86920 3.94971 4.06782 4.09524 4.12367 4.17494 4.24685 4.37136 4.39124 4.39735 4.58270 4.60908 4.66714 4.73487 4.74490 4.79028 4.97773 5.06977 5.11740 5.12036 5.27075 5.29436 5.30245 5.35282 5.42385 5.48820 5.69828 5.70926 5.89214 6.07844 6.20627 6.47919 6.75244 7.31539 8.87373 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013366 B = 0.002670 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.308198 B =10486.035443 C =11502.496936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.109 3.891 4 C -0.212 4.212 5 C -0.089 4.089 6 C -0.119 4.119 7 C -0.043 4.043 8 C -0.165 4.165 9 C -0.081 4.081 10 C -0.118 4.118 11 C 0.145 3.855 12 H 0.086 0.914 13 N -1.099 6.099 14 S 2.619 3.381 15 O -0.995 6.995 16 O -1.000 7.000 17 C -0.589 4.589 18 C 0.020 3.980 19 C -0.538 4.538 20 H 0.077 0.923 21 C -0.005 4.005 22 N -0.935 5.935 23 Si 0.973 3.027 24 H -0.286 1.286 25 H -0.263 1.263 26 H -0.262 1.262 27 C -0.094 4.094 28 H 0.118 0.882 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.145 0.855 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.427 0.573 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.005 0.995 42 H 0.006 0.994 43 H 0.267 0.733 44 H 0.069 0.931 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.228 -18.529 -17.576 27.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.064 3.936 4 C -0.230 4.230 5 C -0.108 4.108 6 C -0.120 4.120 7 C -0.043 4.043 8 C -0.184 4.184 9 C -0.118 4.118 10 C -0.157 4.157 11 C 0.038 3.962 12 H 0.104 0.896 13 N -0.860 5.860 14 S 2.715 3.285 15 O -0.984 6.984 16 O -0.990 6.990 17 C -0.721 4.721 18 C -0.019 4.019 19 C -0.577 4.577 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.575 5.575 23 Si 0.797 3.203 24 H -0.211 1.211 25 H -0.188 1.188 26 H -0.187 1.187 27 C -0.133 4.133 28 H 0.136 0.864 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.162 0.838 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.264 0.736 39 H 0.163 0.837 40 H 0.158 0.842 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.675 -17.753 -17.280 27.388 hybrid contribution 0.370 -0.021 0.775 0.858 sum -11.306 -17.774 -16.506 26.762 Atomic orbital electron populations 1.23305 0.76694 1.05440 1.02062 1.86030 1.23254 1.26861 1.88870 1.19120 0.92791 0.84561 0.97089 1.21353 1.00949 0.91929 1.08789 1.21188 0.94144 0.97916 0.97505 1.19580 0.93623 0.94498 1.04320 1.19654 0.96708 0.91053 0.96915 1.20587 0.91618 0.98606 1.07564 1.20573 0.89077 0.98292 1.03864 1.21883 1.01258 0.92168 1.00403 1.20923 0.91775 0.82465 1.01004 0.89639 1.55340 1.73782 1.30264 1.26565 1.04491 0.74958 0.73981 0.75044 1.93508 1.37148 1.86221 1.81547 1.93503 1.78322 1.50616 1.76589 1.30352 1.16371 1.12460 1.12940 1.18809 0.97137 0.93967 0.91938 1.21501 1.29609 1.03928 1.02674 0.90504 1.26127 0.97924 0.95537 1.00747 1.70100 1.46002 1.15098 1.26263 0.85377 0.79091 0.78347 0.77527 1.21103 1.18752 1.18703 1.20922 0.95515 0.93660 1.03182 0.86360 0.92152 0.91781 0.83777 0.84933 0.84288 0.89267 0.87892 0.89643 0.88468 0.73590 0.83664 0.84154 0.97618 0.97609 0.92442 0.91246 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.82 113.37 1.11 1.32 16 2 O -0.34 -6.31 10.50 -92.40 -0.97 -7.28 16 3 C 0.11 2.22 6.68 22.44 0.15 2.37 16 4 C -0.21 -3.99 9.04 22.30 0.20 -3.79 16 5 C -0.09 -1.82 9.60 22.34 0.21 -1.61 16 6 C -0.12 -2.53 5.74 -19.83 -0.11 -2.64 16 7 C -0.04 -0.82 5.74 -19.86 -0.11 -0.94 16 8 C -0.17 -3.23 9.55 22.45 0.21 -3.02 16 9 C -0.08 -1.13 5.67 29.74 0.17 -0.96 16 10 C -0.12 -1.65 5.52 30.61 0.17 -1.48 16 11 C 0.15 2.97 2.58 45.01 0.12 3.08 16 12 H 0.09 1.84 7.13 -2.39 -0.02 1.82 16 13 N -1.10 -24.79 5.38 -169.32 -0.91 -25.70 16 14 S 2.62 90.05 5.38 -56.49 -0.30 89.74 16 15 O -0.99 -40.52 17.35 -127.65 -2.22 -42.74 16 16 O -1.00 -40.86 18.08 -127.65 -2.31 -43.16 16 17 C -0.59 -21.56 5.90 71.98 0.42 -21.13 16 18 C 0.02 1.06 4.98 29.85 0.15 1.21 16 19 C -0.54 -29.60 9.11 25.60 0.23 -29.36 16 20 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 21 C -0.01 -0.28 5.46 84.66 0.46 0.18 16 22 N -0.94 -57.01 13.29 21.45 0.28 -56.72 16 23 Si 0.97 43.11 29.54 68.60 2.03 45.14 16 24 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 26 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 27 C -0.09 -2.05 5.28 29.74 0.16 -1.89 16 28 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.58 7.67 -2.39 -0.02 0.56 16 30 H 0.06 0.55 7.67 -2.38 -0.02 0.53 16 31 H 0.14 2.03 6.33 -2.91 -0.02 2.01 16 32 H 0.13 2.38 8.05 -2.91 -0.02 2.36 16 33 H 0.14 2.30 8.05 -2.91 -0.02 2.28 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 1.05 8.12 -2.39 -0.02 1.03 16 36 H 0.08 1.02 8.10 -2.39 -0.02 1.00 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.43 7.43 8.80 -96.74 -0.85 6.57 16 39 H 0.15 4.57 8.14 -2.39 -0.02 4.55 16 40 H 0.14 4.45 7.45 -2.39 -0.02 4.43 16 41 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 42 H 0.01 0.31 8.14 -2.39 -0.02 0.30 16 43 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 44 H 0.07 1.82 7.66 -2.39 -0.02 1.80 16 45 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -78.58 379.57 -0.70 -79.29 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.15 Total: 20.09 kcal Atomic # 6 Polarization: -62.20 SS G_CDS: 3.54 Total: -58.65 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -0.63 Total: -82.42 kcal Atomic # 8 Polarization: -87.69 SS G_CDS: -5.49 Total: -93.18 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 90.05 SS G_CDS: -0.30 Total: 89.74 kcal Total: -78.58 -0.70 -79.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612143658.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.444 kcal (2) G-P(sol) polarization free energy of solvation -78.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds