Wall clock time and date at job start Tue Mar 31 2020 23:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99989 * 2 1 4 4 C 1.53001 * 109.47044 * 275.00220 * 3 2 1 5 5 H 1.09005 * 109.48328 * 305.02041 * 4 3 2 6 6 C 1.53091 * 109.47985 * 185.00127 * 4 3 2 7 7 C 1.53178 * 109.16405 * 182.40870 * 6 4 3 8 8 C 1.53182 * 109.03403 * 56.98315 * 7 6 4 9 9 C 1.53095 * 109.16184 * 303.01569 * 8 7 6 10 10 O 1.42903 * 109.48048 * 65.06135 * 4 3 2 11 11 S 1.65601 * 119.99976 * 180.02562 * 2 1 3 12 12 O 1.42102 * 106.40349 * 336.45378 * 11 2 1 13 13 O 1.42102 * 106.40249 * 203.53716 * 11 2 1 14 14 C 1.76202 * 107.21989 * 89.99498 * 11 2 1 15 15 C 1.38650 * 119.87673 * 270.01995 * 14 11 2 16 16 C 1.38618 * 120.50395 * 180.02562 * 15 14 11 17 17 C 1.37643 * 120.24323 * 359.67398 * 16 15 14 18 18 C 1.40699 * 119.74478 * 0.58394 * 17 16 15 19 19 C 1.41392 * 120.24263 * 179.72148 * 18 17 16 20 20 H 1.08001 * 119.99891 * 204.87276 * 19 18 17 21 21 C 1.39947 * 120.00461 * 24.85974 * 19 18 17 22 22 N 1.30824 * 119.99745 * 17.44317 * 21 19 18 23 23 Si 1.86794 * 120.00213 * 197.43543 * 21 19 18 24 24 H 1.48494 * 109.47363 * 265.18569 * 23 21 19 25 25 H 1.48501 * 109.46977 * 145.18546 * 23 21 19 26 26 H 1.48501 * 109.47079 * 25.19166 * 23 21 19 27 27 C 1.37600 * 119.87523 * 90.00179 * 14 11 2 28 28 H 1.09008 * 109.46499 * 269.99492 * 1 2 3 29 29 H 1.09000 * 109.47326 * 29.99622 * 1 2 3 30 30 H 1.08999 * 109.47120 * 150.00043 * 1 2 3 31 31 H 1.08994 * 109.47144 * 35.00864 * 3 2 1 32 32 H 1.09008 * 109.46959 * 155.00375 * 3 2 1 33 33 H 1.09006 * 109.52242 * 302.31785 * 6 4 3 34 34 H 1.08997 * 109.52460 * 62.43817 * 6 4 3 35 35 H 1.09007 * 109.54145 * 176.84275 * 7 6 4 36 36 H 1.08995 * 109.54593 * 297.02624 * 7 6 4 37 37 H 1.08996 * 109.52208 * 62.92340 * 8 7 6 38 38 H 1.08998 * 109.52151 * 183.04927 * 8 7 6 39 39 H 1.08998 * 109.48126 * 177.58986 * 9 8 7 40 40 H 1.09001 * 109.47762 * 297.61880 * 9 8 7 41 41 H 1.08004 * 119.74915 * 0.02562 * 15 14 11 42 42 H 1.08000 * 119.87748 * 179.97438 * 16 15 14 43 43 H 1.07997 * 120.12546 * 180.32303 * 17 16 15 44 44 H 0.96993 * 120.00351 * 179.97438 * 22 21 19 45 45 H 1.08004 * 120.12557 * 0.02562 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7733 -1.4370 5 1 2.8115 1.0011 -2.0477 6 6 3.2148 3.0320 -1.4501 7 6 3.3067 3.5651 -2.8831 8 6 1.8928 3.8314 -3.4088 9 6 1.0726 2.5417 -3.3201 10 8 1.0531 2.0834 -1.9667 11 16 2.2930 -1.4342 -0.0006 12 8 1.4114 -2.4068 0.5435 13 8 3.5760 -1.1570 0.5439 14 6 2.5537 -1.8852 -1.6839 15 6 1.6145 -2.6628 -2.3439 16 6 1.8067 -3.0256 -3.6679 17 6 2.9315 -2.6109 -4.3441 18 6 3.8940 -1.8261 -3.6828 19 6 5.0562 -1.3993 -4.3656 20 1 5.9526 -1.1641 -3.8110 21 6 5.0452 -1.2817 -5.7600 22 7 3.9070 -1.2285 -6.4030 23 14 6.6554 -1.2007 -6.7033 24 1 7.0213 0.2194 -6.9371 25 1 6.5002 -1.8931 -8.0079 26 1 7.7248 -1.8642 -5.9150 27 6 3.6884 -1.4641 -2.3385 28 1 -0.3632 -0.0001 1.0278 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6503 2.0042 0.5895 32 1 3.1859 1.1177 0.4343 33 1 2.7685 3.7907 -0.8071 34 1 4.2130 2.7880 -1.0865 35 1 3.8793 4.4927 -2.8911 36 1 3.7994 2.8270 -3.5159 37 1 1.4198 4.6061 -2.8054 38 1 1.9459 4.1597 -4.4468 39 1 0.0529 2.7358 -3.6529 40 1 1.5236 1.7797 -3.9557 41 1 0.7264 -2.9883 -1.8226 42 1 1.0687 -3.6319 -4.1721 43 1 3.0768 -2.8904 -5.3772 44 1 3.8993 -1.1467 -7.3694 45 1 4.4188 -0.8586 -1.8223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619478141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:20 Heat of formation + Delta-G solvation = -130.208139 kcal Electronic energy + Delta-G solvation = -29221.289990 eV Core-core repulsion = 25329.194075 eV Total energy + Delta-G solvation = -3892.095914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.40511 -39.45085 -38.34301 -37.15331 -36.90264 -35.67602 -34.48624 -32.65100 -31.92156 -31.59947 -28.72335 -27.34676 -26.23587 -24.94722 -23.70874 -23.04344 -22.81796 -21.14416 -20.26705 -19.46585 -18.56519 -17.80258 -17.32613 -17.07906 -17.00349 -16.77464 -16.52047 -15.90268 -15.56513 -15.38824 -15.14902 -15.10704 -14.66103 -14.33504 -14.07891 -13.98013 -13.70565 -13.57482 -13.39869 -13.35296 -13.21430 -13.09833 -13.05482 -12.83084 -12.64087 -12.60152 -12.48021 -12.24633 -12.09259 -11.93899 -11.77219 -11.57767 -11.37913 -11.22324 -11.15227 -10.41251 -9.95724 -9.77266 -9.55831 -8.73877 -6.45695 -0.54078 0.40012 0.83231 1.35236 1.41865 1.49852 2.02893 2.15528 2.55234 2.73632 2.83518 3.35506 3.50333 3.74016 3.83553 3.96251 3.97755 4.13379 4.27553 4.31064 4.33685 4.41040 4.53282 4.57975 4.68667 4.75186 4.81140 4.84682 4.88461 4.93170 4.99860 5.00755 5.04785 5.05806 5.13553 5.15330 5.18886 5.21597 5.39519 5.41386 5.55071 5.65368 5.87471 5.92441 6.08678 6.31033 6.51362 6.78989 6.83882 8.23730 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009606 B = 0.005706 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.067653 B = 4906.318391 C = 6556.020261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.989 5.989 3 C 0.123 3.877 4 C 0.060 3.940 5 H 0.035 0.965 6 C -0.144 4.144 7 C -0.126 4.126 8 C -0.145 4.145 9 C 0.056 3.944 10 O -0.376 6.376 11 S 2.706 3.294 12 O -0.984 6.984 13 O -0.988 6.988 14 C -0.638 4.638 15 C -0.149 4.149 16 C -0.123 4.123 17 C -0.141 4.141 18 C 0.067 3.933 19 C -0.495 4.495 20 H 0.077 0.923 21 C 0.041 3.959 22 N -0.819 5.819 23 Si 0.977 3.023 24 H -0.261 1.261 25 H -0.264 1.264 26 H -0.261 1.261 27 C -0.138 4.138 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.123 0.877 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.038 0.962 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.018 0.982 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.113 0.887 44 H 0.291 0.709 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.182 10.537 5.137 12.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.828 5.828 3 C -0.002 4.002 4 C 0.001 3.999 5 H 0.053 0.947 6 C -0.182 4.182 7 C -0.164 4.164 8 C -0.183 4.183 9 C -0.021 4.021 10 O -0.295 6.295 11 S 2.799 3.201 12 O -0.974 6.974 13 O -0.979 6.979 14 C -0.727 4.727 15 C -0.170 4.170 16 C -0.142 4.142 17 C -0.161 4.161 18 C 0.063 3.937 19 C -0.524 4.524 20 H 0.095 0.905 21 C -0.174 4.174 22 N -0.445 5.445 23 Si 0.797 3.203 24 H -0.185 1.185 25 H -0.189 1.189 26 H -0.185 1.185 27 C -0.159 4.159 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.141 0.859 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.126 0.874 40 H 0.037 0.963 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.131 0.869 44 H 0.102 0.898 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.230 10.095 5.782 12.755 hybrid contribution 0.940 -0.254 -1.951 2.181 sum -4.290 9.841 3.830 11.398 Atomic orbital electron populations 1.21691 0.76554 1.04140 1.02910 1.57131 1.16278 1.20069 1.89288 1.21695 0.98651 0.85075 0.94793 1.22762 0.84991 0.96541 0.95618 0.94688 1.22124 1.00622 0.97406 0.98045 1.21598 0.97347 1.01453 0.96000 1.22108 0.95719 0.98004 1.02446 1.22610 1.01608 0.94707 0.83132 1.87815 1.28009 1.85983 1.27671 1.01257 0.72294 0.72657 0.73845 1.93482 1.66521 1.59741 1.77706 1.93473 1.41551 1.84973 1.77862 1.30329 1.04167 1.13480 1.24738 1.20413 0.98919 1.02377 0.95261 1.21118 0.97853 1.00530 0.94694 1.21620 0.95754 0.98577 1.00113 1.17992 0.93525 0.90344 0.91792 1.19802 0.98264 1.41701 0.92674 0.90458 1.26663 1.01166 0.91189 0.98418 1.69813 1.28911 1.34785 1.10969 0.85266 0.77717 0.79610 0.77692 1.18516 1.18851 1.18466 1.20748 0.96337 1.02694 0.96125 0.90700 0.88717 0.91974 0.85930 0.87579 0.88597 0.90286 0.89586 0.94317 0.89436 0.90515 0.87434 0.96342 0.85532 0.85773 0.86942 0.89830 0.87442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.30 10.11 127.77 1.29 3.59 16 2 N -0.99 -29.98 3.17 -539.11 -1.71 -31.69 16 3 C 0.12 3.23 5.39 86.38 0.47 3.70 16 4 C 0.06 1.78 2.89 30.62 0.09 1.87 16 5 H 0.04 1.33 6.94 -2.38 -0.02 1.32 16 6 C -0.14 -3.41 5.42 30.68 0.17 -3.24 16 7 C -0.13 -3.11 6.03 30.71 0.19 -2.93 16 8 C -0.15 -3.28 6.14 30.69 0.19 -3.09 16 9 C 0.06 1.56 6.84 72.01 0.49 2.05 16 10 O -0.38 -10.89 8.78 -148.98 -1.31 -12.20 16 11 S 2.71 104.04 5.65 -56.49 -0.32 103.72 16 12 O -0.98 -40.14 16.34 -128.00 -2.09 -42.23 16 13 O -0.99 -41.30 15.82 -128.00 -2.02 -43.33 16 14 C -0.64 -28.53 5.97 22.22 0.13 -28.40 16 15 C -0.15 -6.55 9.53 22.46 0.21 -6.33 16 16 C -0.12 -5.59 10.02 22.22 0.22 -5.36 16 17 C -0.14 -7.21 8.70 22.73 0.20 -7.01 16 18 C 0.07 3.54 5.57 -21.29 -0.12 3.42 16 19 C -0.50 -25.98 9.05 23.46 0.21 -25.77 16 20 H 0.08 3.95 7.90 -2.91 -0.02 3.93 16 21 C 0.04 2.00 5.15 85.26 0.44 2.44 16 22 N -0.82 -40.62 10.96 21.83 0.24 -40.38 16 23 Si 0.98 36.81 29.59 68.60 2.03 38.84 16 24 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 25 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 26 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 27 C -0.14 -6.79 8.10 22.73 0.18 -6.60 16 28 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.09 2.17 6.67 -2.39 -0.02 2.15 16 30 H 0.06 1.64 7.79 -2.39 -0.02 1.62 16 31 H 0.12 2.38 8.11 -2.39 -0.02 2.36 16 32 H 0.11 2.78 6.92 -2.38 -0.02 2.77 16 33 H 0.10 1.78 8.14 -2.38 -0.02 1.77 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.13 4.93 7.60 -2.91 -0.02 4.90 16 42 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 43 H 0.11 5.90 6.17 -2.91 -0.02 5.88 16 44 H 0.29 12.98 8.30 -92.71 -0.77 12.21 16 45 H 0.11 5.14 7.60 -2.91 -0.02 5.12 16 Total: -1.00 -64.33 371.88 0.16 -64.17 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: 0.98 Total: 34.77 kcal Atomic # 6 Polarization: -76.03 SS G_CDS: 4.36 Total: -71.67 kcal Atomic # 7 Polarization: -70.60 SS G_CDS: -1.47 Total: -72.07 kcal Atomic # 8 Polarization: -92.34 SS G_CDS: -5.43 Total: -97.77 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.84 kcal Atomic # 16 Polarization: 104.04 SS G_CDS: -0.32 Total: 103.72 kcal Total: -64.33 0.16 -64.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619478141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.036 kcal (2) G-P(sol) polarization free energy of solvation -64.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds