Wall clock time and date at job start Tue Mar 31 2020 22:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47176 * 2 1 4 4 C 1.46507 * 119.99726 * 83.95342 * 3 2 1 5 5 C 1.53002 * 109.47073 * 65.23868 * 4 3 2 6 6 H 1.09003 * 110.27468 * 297.76732 * 5 4 3 7 7 C 1.55501 * 110.36449 * 175.66058 * 5 4 3 8 8 C 1.55302 * 100.69240 * 204.61377 * 7 5 4 9 9 C 1.54385 * 102.44238 * 34.12589 * 8 7 5 10 10 O 1.43236 * 107.58525 * 338.54587 * 9 8 7 11 11 S 1.65595 * 120.00556 * 263.95192 * 3 2 1 12 12 O 1.42103 * 106.40222 * 23.53873 * 11 3 2 13 13 O 1.42097 * 106.40740 * 156.45991 * 11 3 2 14 14 C 1.76198 * 107.21690 * 270.00132 * 11 3 2 15 15 C 1.38655 * 119.87868 * 89.99804 * 14 11 3 16 16 C 1.38616 * 120.50783 * 179.97438 * 15 14 11 17 17 C 1.37640 * 120.24298 * 359.97366 * 16 15 14 18 18 C 1.40696 * 119.74655 * 0.02948 * 17 16 15 19 19 C 1.41402 * 120.24613 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00007 * 154.77534 * 19 18 17 21 21 C 1.39941 * 119.99569 * 334.76889 * 19 18 17 22 22 N 1.30827 * 120.00384 * 343.11687 * 21 19 18 23 23 Si 1.86799 * 119.99884 * 163.11895 * 21 19 18 24 24 H 1.48507 * 109.47254 * 59.99732 * 23 21 19 25 25 H 1.48498 * 109.47277 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47208 * 300.00234 * 23 21 19 27 27 C 1.37599 * 119.87699 * 269.71989 * 14 11 3 28 28 H 1.09002 * 109.47182 * 184.62658 * 1 2 3 29 29 H 1.08994 * 109.47408 * 304.62709 * 1 2 3 30 30 H 1.09007 * 109.47045 * 64.63056 * 1 2 3 31 31 H 1.09004 * 109.47141 * 240.00140 * 2 1 3 32 32 H 1.09000 * 109.47305 * 120.00565 * 2 1 3 33 33 H 1.09006 * 109.46813 * 305.24502 * 4 3 2 34 34 H 1.08995 * 109.46866 * 185.24294 * 4 3 2 35 35 H 1.08999 * 111.33453 * 86.73583 * 7 5 4 36 36 H 1.09000 * 111.14886 * 322.40411 * 7 5 4 37 37 H 1.09010 * 110.84711 * 275.83500 * 8 7 5 38 38 H 1.09003 * 110.84906 * 152.42201 * 8 7 5 39 39 H 1.08997 * 109.82385 * 98.05409 * 9 8 7 40 40 H 1.08992 * 109.83164 * 219.02851 * 9 8 7 41 41 H 1.08006 * 119.74742 * 359.95585 * 15 14 11 42 42 H 1.07996 * 119.87784 * 180.02562 * 16 15 14 43 43 H 1.07997 * 120.12684 * 180.02562 * 17 16 15 44 44 H 0.97001 * 120.00051 * 179.97438 * 22 21 19 45 45 H 1.08000 * 120.12610 * 0.02562 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1365 2.1163 1.2618 5 6 3.2013 1.4553 2.1394 6 1 2.9074 0.4350 2.3860 7 6 3.4218 2.2819 3.4379 8 6 4.8709 1.8608 3.8049 9 6 5.5240 1.6734 2.4187 10 8 4.4723 1.4601 1.4700 11 16 2.4368 2.1116 -1.4260 12 8 1.7291 1.4267 -2.4505 13 8 2.3265 3.5113 -1.2076 14 6 4.1466 1.7837 -1.6978 15 6 4.5294 0.6524 -2.4022 16 6 5.8708 0.3821 -2.6241 17 6 6.8384 1.2365 -2.1465 18 6 6.4616 2.3874 -1.4303 19 6 7.4469 3.2727 -0.9354 20 1 7.2022 4.3100 -0.7608 21 6 8.7390 2.8046 -0.6716 22 7 8.9594 1.5198 -0.5603 23 14 10.1493 4.0142 -0.4783 24 1 9.8624 4.9324 0.6531 25 1 11.4056 3.2706 -0.2066 26 1 10.3011 4.8014 -1.7283 27 6 5.0966 2.6542 -1.2152 28 1 -0.3634 -1.0243 0.0829 29 1 -0.3634 0.5839 0.8456 30 1 -0.3633 0.4403 -0.9286 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.1782 2.1030 1.7811 34 1 2.4240 3.1473 1.0560 35 1 2.7184 1.9903 4.2178 36 1 3.3624 3.3518 3.2379 37 1 4.8730 0.9253 4.3644 38 1 5.3730 2.6482 4.3672 39 1 6.0872 2.5676 2.1515 40 1 6.1872 0.8087 2.4363 41 1 3.7768 -0.0235 -2.7808 42 1 6.1576 -0.5018 -3.1744 43 1 7.8829 1.0242 -2.3208 44 1 9.8552 1.1954 -0.3778 45 1 4.7961 3.5369 -0.6703 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619478448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:58 Heat of formation + Delta-G solvation = -103.341877 kcal Electronic energy + Delta-G solvation = -29405.271625 eV Core-core repulsion = 25514.340719 eV Total energy + Delta-G solvation = -3890.930906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.18356 -37.46808 -36.66947 -36.33373 -35.19337 -33.71306 -31.89025 -31.22096 -29.92925 -29.62218 -28.88811 -25.37007 -25.13449 -22.81221 -21.72640 -21.39193 -20.83630 -20.60770 -18.54722 -17.78728 -17.19516 -16.30607 -16.00975 -15.82782 -15.52877 -15.14571 -14.57499 -14.42253 -14.29636 -13.76344 -13.49506 -13.33709 -13.23368 -13.04346 -12.47719 -12.45300 -12.31107 -12.08770 -11.78131 -11.57112 -11.49245 -11.46663 -11.34256 -11.28255 -11.23338 -11.08612 -10.89344 -10.88304 -10.77297 -10.69101 -10.58198 -10.49235 -9.65399 -9.50269 -9.25111 -9.10271 -8.61577 -7.83528 -7.52656 -6.80429 -4.40201 1.12030 2.38606 2.77664 3.03122 3.05983 3.15263 3.51552 3.89319 4.15223 4.39697 4.55829 4.65529 4.75531 4.96658 5.02549 5.09816 5.27950 5.36360 5.44007 5.45812 5.53850 5.57238 5.60170 5.75951 5.77499 5.84686 5.89901 5.93890 6.14612 6.17464 6.27430 6.29450 6.32381 6.39864 6.46980 6.79462 6.81654 6.90957 7.06914 7.17414 7.38437 7.53061 7.55581 7.87673 7.94169 8.08709 8.53729 8.80298 8.86740 10.14878 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012273 B = 0.005230 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.807277 B = 5352.176855 C = 6649.035838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.124 3.876 3 N -0.991 5.991 4 C 0.122 3.878 5 C 0.059 3.941 6 H 0.068 0.932 7 C -0.150 4.150 8 C -0.155 4.155 9 C 0.057 3.943 10 O -0.347 6.347 11 S 2.685 3.315 12 O -0.976 6.976 13 O -0.975 6.975 14 C -0.622 4.622 15 C -0.145 4.145 16 C -0.123 4.123 17 C -0.120 4.120 18 C 0.095 3.905 19 C -0.461 4.461 20 H 0.078 0.922 21 C 0.077 3.923 22 N -0.797 5.797 23 Si 0.905 3.095 24 H -0.266 1.266 25 H -0.279 1.279 26 H -0.264 1.264 27 C -0.090 4.090 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.280 0.720 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.759 -2.698 8.770 12.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.002 4.002 3 N -0.826 5.826 4 C -0.004 4.004 5 C -0.001 4.001 6 H 0.086 0.914 7 C -0.188 4.188 8 C -0.193 4.193 9 C -0.020 4.020 10 O -0.266 6.266 11 S 2.783 3.217 12 O -0.967 6.967 13 O -0.966 6.966 14 C -0.714 4.714 15 C -0.166 4.166 16 C -0.142 4.142 17 C -0.140 4.140 18 C 0.092 3.908 19 C -0.491 4.491 20 H 0.096 0.904 21 C -0.140 4.140 22 N -0.423 5.423 23 Si 0.730 3.270 24 H -0.190 1.190 25 H -0.204 1.204 26 H -0.188 1.188 27 C -0.111 4.111 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.119 0.881 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.091 0.909 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.156 -2.418 8.089 12.454 hybrid contribution 1.585 0.026 0.703 1.734 sum -7.571 -2.392 8.792 11.846 Atomic orbital electron populations 1.22223 0.96392 1.01946 1.02547 1.21125 0.93808 0.81917 1.03349 1.57457 1.79820 1.23255 1.22053 1.21493 0.97777 0.96519 0.84591 1.23479 0.86821 0.98464 0.91315 0.91414 1.23349 0.96911 1.01260 0.97285 1.23130 0.95780 1.01834 0.98536 1.23057 0.90547 1.01971 0.86435 1.88700 1.12964 1.93625 1.31304 1.01793 0.75082 0.72872 0.71956 1.93493 1.72739 1.75403 1.55050 1.93493 1.87533 1.30336 1.85205 1.29612 1.21328 1.06215 1.14275 1.19996 0.95918 0.96757 1.03973 1.20740 0.93210 0.98963 1.01289 1.21558 0.98734 0.96162 0.97506 1.17595 0.91141 0.92339 0.89771 1.19492 0.93972 0.96943 1.38723 0.90383 1.25837 0.99960 0.95490 0.92673 1.69792 1.23331 1.14302 1.34890 0.86417 0.79621 0.81059 0.79934 1.19028 1.20418 1.18847 1.20600 0.92857 0.97799 0.99856 0.91777 0.92543 0.91915 0.89945 0.90743 0.90106 0.88264 0.90342 0.90059 0.91189 0.90429 0.90608 0.91791 0.88136 0.88825 0.86077 0.90885 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 10.23 37.16 0.38 -1.55 16 2 C 0.12 1.64 5.97 -4.04 -0.02 1.61 16 3 N -0.99 -15.59 2.78 -114.37 -0.32 -15.91 16 4 C 0.12 1.67 5.60 -4.04 -0.02 1.65 16 5 C 0.06 0.79 3.40 -25.40 -0.09 0.71 16 6 H 0.07 0.83 7.02 -51.93 -0.36 0.47 16 7 C -0.15 -1.64 6.62 -24.18 -0.16 -1.80 16 8 C -0.16 -1.83 7.00 -24.78 -0.17 -2.01 16 9 C 0.06 0.93 7.80 37.88 0.30 1.22 16 10 O -0.35 -6.23 9.76 -35.23 -0.34 -6.57 16 11 S 2.69 53.58 5.64 -107.50 -0.61 52.97 16 12 O -0.98 -20.64 16.22 -57.17 -0.93 -21.57 16 13 O -0.98 -21.21 15.78 -57.17 -0.90 -22.12 16 14 C -0.62 -14.10 5.89 -39.66 -0.23 -14.33 16 15 C -0.15 -3.28 9.53 -39.29 -0.37 -3.66 16 16 C -0.12 -2.85 10.02 -39.66 -0.40 -3.25 16 17 C -0.12 -3.04 8.69 -38.87 -0.34 -3.38 16 18 C 0.09 2.46 5.57 -106.82 -0.59 1.86 16 19 C -0.46 -11.79 9.06 -37.74 -0.34 -12.13 16 20 H 0.08 1.94 7.90 -52.49 -0.41 1.52 16 21 C 0.08 1.86 5.15 -17.34 -0.09 1.77 16 22 N -0.80 -19.64 10.95 55.55 0.61 -19.03 16 23 Si 0.91 18.14 29.59 -169.99 -5.03 13.11 16 24 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 25 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 27 C -0.09 -2.18 8.18 -38.87 -0.32 -2.50 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.56 7.98 -51.93 -0.41 0.14 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.16 7.57 -51.93 -0.39 0.77 16 32 H 0.07 0.85 6.80 -51.93 -0.35 0.50 16 33 H 0.08 0.84 7.98 -51.93 -0.41 0.42 16 34 H 0.10 1.49 6.84 -51.93 -0.36 1.14 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.89 8.06 -51.93 -0.42 0.47 16 37 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.10 2.07 7.60 -52.48 -0.40 1.67 16 42 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 43 H 0.12 3.13 6.18 -52.49 -0.32 2.81 16 44 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 45 H 0.11 2.52 7.60 -52.49 -0.40 2.12 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -30.26 375.62 -11.10 -41.37 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -6.77 Total: 7.85 kcal Atomic # 6 Polarization: -33.29 SS G_CDS: -2.48 Total: -35.77 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.29 Total: -34.94 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -2.17 Total: -50.25 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Atomic # 16 Polarization: 53.58 SS G_CDS: -0.61 Total: 52.97 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.26 -11.10 -41.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619478448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.974 kcal (2) G-P(sol) polarization free energy of solvation -30.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds