Wall clock time and date at job start Tue Mar 31 2020 22:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47176 * 2 1 4 4 C 1.46507 * 119.99726 * 83.95342 * 3 2 1 5 5 C 1.53002 * 109.47073 * 65.23868 * 4 3 2 6 6 H 1.09003 * 110.27468 * 297.76732 * 5 4 3 7 7 C 1.55501 * 110.36449 * 175.66058 * 5 4 3 8 8 C 1.55302 * 100.69240 * 204.61377 * 7 5 4 9 9 C 1.54385 * 102.44238 * 34.12589 * 8 7 5 10 10 O 1.43236 * 107.58525 * 338.54587 * 9 8 7 11 11 S 1.65595 * 120.00556 * 263.95192 * 3 2 1 12 12 O 1.42103 * 106.40222 * 23.53873 * 11 3 2 13 13 O 1.42097 * 106.40740 * 156.45991 * 11 3 2 14 14 C 1.76198 * 107.21690 * 270.00132 * 11 3 2 15 15 C 1.38655 * 119.87868 * 89.99804 * 14 11 3 16 16 C 1.38616 * 120.50783 * 179.97438 * 15 14 11 17 17 C 1.37640 * 120.24298 * 359.97366 * 16 15 14 18 18 C 1.40696 * 119.74655 * 0.02948 * 17 16 15 19 19 C 1.41402 * 120.24613 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00007 * 154.77534 * 19 18 17 21 21 C 1.39941 * 119.99569 * 334.76889 * 19 18 17 22 22 N 1.30827 * 120.00384 * 343.11687 * 21 19 18 23 23 Si 1.86799 * 119.99884 * 163.11895 * 21 19 18 24 24 H 1.48507 * 109.47254 * 59.99732 * 23 21 19 25 25 H 1.48498 * 109.47277 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47208 * 300.00234 * 23 21 19 27 27 C 1.37599 * 119.87699 * 269.71989 * 14 11 3 28 28 H 1.09002 * 109.47182 * 184.62658 * 1 2 3 29 29 H 1.08994 * 109.47408 * 304.62709 * 1 2 3 30 30 H 1.09007 * 109.47045 * 64.63056 * 1 2 3 31 31 H 1.09004 * 109.47141 * 240.00140 * 2 1 3 32 32 H 1.09000 * 109.47305 * 120.00565 * 2 1 3 33 33 H 1.09006 * 109.46813 * 305.24502 * 4 3 2 34 34 H 1.08995 * 109.46866 * 185.24294 * 4 3 2 35 35 H 1.08999 * 111.33453 * 86.73583 * 7 5 4 36 36 H 1.09000 * 111.14886 * 322.40411 * 7 5 4 37 37 H 1.09010 * 110.84711 * 275.83500 * 8 7 5 38 38 H 1.09003 * 110.84906 * 152.42201 * 8 7 5 39 39 H 1.08997 * 109.82385 * 98.05409 * 9 8 7 40 40 H 1.08992 * 109.83164 * 219.02851 * 9 8 7 41 41 H 1.08006 * 119.74742 * 359.95585 * 15 14 11 42 42 H 1.07996 * 119.87784 * 180.02562 * 16 15 14 43 43 H 1.07997 * 120.12684 * 180.02562 * 17 16 15 44 44 H 0.97001 * 120.00051 * 179.97438 * 22 21 19 45 45 H 1.08000 * 120.12610 * 0.02562 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1365 2.1163 1.2618 5 6 3.2013 1.4553 2.1394 6 1 2.9074 0.4350 2.3860 7 6 3.4218 2.2819 3.4379 8 6 4.8709 1.8608 3.8049 9 6 5.5240 1.6734 2.4187 10 8 4.4723 1.4601 1.4700 11 16 2.4368 2.1116 -1.4260 12 8 1.7291 1.4267 -2.4505 13 8 2.3265 3.5113 -1.2076 14 6 4.1466 1.7837 -1.6978 15 6 4.5294 0.6524 -2.4022 16 6 5.8708 0.3821 -2.6241 17 6 6.8384 1.2365 -2.1465 18 6 6.4616 2.3874 -1.4303 19 6 7.4469 3.2727 -0.9354 20 1 7.2022 4.3100 -0.7608 21 6 8.7390 2.8046 -0.6716 22 7 8.9594 1.5198 -0.5603 23 14 10.1493 4.0142 -0.4783 24 1 9.8624 4.9324 0.6531 25 1 11.4056 3.2706 -0.2066 26 1 10.3011 4.8014 -1.7283 27 6 5.0966 2.6542 -1.2152 28 1 -0.3634 -1.0243 0.0829 29 1 -0.3634 0.5839 0.8456 30 1 -0.3633 0.4403 -0.9286 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.1782 2.1030 1.7811 34 1 2.4240 3.1473 1.0560 35 1 2.7184 1.9903 4.2178 36 1 3.3624 3.3518 3.2379 37 1 4.8730 0.9253 4.3644 38 1 5.3730 2.6482 4.3672 39 1 6.0872 2.5676 2.1515 40 1 6.1872 0.8087 2.4363 41 1 3.7768 -0.0235 -2.7808 42 1 6.1576 -0.5018 -3.1744 43 1 7.8829 1.0242 -2.3208 44 1 9.8552 1.1954 -0.3778 45 1 4.7961 3.5369 -0.6703 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619478448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:57 Heat of formation + Delta-G solvation = -122.028231 kcal Electronic energy + Delta-G solvation = -29406.081926 eV Core-core repulsion = 25514.340719 eV Total energy + Delta-G solvation = -3891.741207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.32397 -39.33290 -38.30676 -37.53637 -36.86461 -35.58364 -32.97236 -32.25397 -31.82350 -31.47609 -30.00567 -27.26520 -26.26027 -23.88698 -23.54416 -22.70357 -22.44082 -21.74497 -20.16585 -19.32972 -18.68973 -17.70107 -17.45588 -17.27253 -16.90555 -16.68571 -16.39927 -15.92473 -15.52448 -15.14234 -15.07912 -14.81357 -14.50327 -14.25127 -14.12366 -13.64774 -13.50414 -13.44403 -13.31917 -13.23858 -13.05024 -13.00740 -12.90156 -12.74611 -12.57688 -12.48479 -12.38543 -12.22100 -12.14011 -11.97881 -11.71331 -11.59680 -11.48544 -11.23407 -11.09045 -10.41041 -9.90053 -9.65734 -9.43643 -8.64949 -6.35664 -0.44996 0.54130 0.95042 1.36825 1.46174 1.49336 2.07689 2.19167 2.63534 2.80637 3.07329 3.41315 3.62993 3.67200 3.83397 3.91634 4.06600 4.24157 4.32885 4.35463 4.42210 4.45352 4.49166 4.56442 4.65766 4.75613 4.83590 4.90015 4.91724 4.97716 4.99753 5.00947 5.08349 5.13157 5.14841 5.27078 5.28360 5.37994 5.44227 5.51143 5.66999 5.75106 5.96837 6.01697 6.19068 6.37674 6.60974 6.88364 6.94869 8.32324 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012273 B = 0.005230 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.807277 B = 5352.176855 C = 6649.035838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.113 3.887 3 N -0.982 5.982 4 C 0.115 3.885 5 C 0.050 3.950 6 H 0.088 0.912 7 C -0.139 4.139 8 C -0.143 4.143 9 C 0.054 3.946 10 O -0.384 6.384 11 S 2.705 3.295 12 O -0.988 6.988 13 O -0.996 6.996 14 C -0.630 4.630 15 C -0.151 4.151 16 C -0.126 4.126 17 C -0.144 4.144 18 C 0.071 3.929 19 C -0.494 4.494 20 H 0.072 0.928 21 C 0.043 3.957 22 N -0.821 5.821 23 Si 0.974 3.026 24 H -0.260 1.260 25 H -0.266 1.266 26 H -0.264 1.264 27 C -0.101 4.101 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.041 0.959 40 H 0.044 0.956 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.109 0.891 44 H 0.288 0.712 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.306 -3.417 10.806 15.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 N -0.820 5.820 4 C -0.010 4.010 5 C -0.009 4.009 6 H 0.105 0.895 7 C -0.177 4.177 8 C -0.181 4.181 9 C -0.023 4.023 10 O -0.304 6.304 11 S 2.800 3.200 12 O -0.978 6.978 13 O -0.986 6.986 14 C -0.719 4.719 15 C -0.172 4.172 16 C -0.145 4.145 17 C -0.164 4.164 18 C 0.068 3.932 19 C -0.524 4.524 20 H 0.090 0.910 21 C -0.172 4.172 22 N -0.447 5.447 23 Si 0.795 3.205 24 H -0.184 1.184 25 H -0.190 1.190 26 H -0.189 1.189 27 C -0.122 4.122 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.144 0.856 34 H 0.098 0.902 35 H 0.135 0.865 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.127 0.873 44 H 0.099 0.901 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.680 -3.150 10.111 15.041 hybrid contribution 1.951 0.165 0.090 1.960 sum -8.729 -2.985 10.201 13.754 Atomic orbital electron populations 1.22206 0.94373 1.03763 1.02338 1.21440 0.95449 0.80241 1.03963 1.57217 1.78977 1.24517 1.21336 1.21813 1.00100 0.95266 0.83806 1.23774 0.84926 1.00050 0.92152 0.89471 1.23359 0.96820 1.00735 0.96816 1.23078 0.96043 1.03289 0.95653 1.22961 0.90612 0.99479 0.89283 1.88666 1.14857 1.93667 1.33177 1.01180 0.73605 0.72435 0.72800 1.93470 1.72149 1.75533 1.56634 1.93460 1.87296 1.32034 1.85853 1.30157 1.23361 1.05402 1.12994 1.20314 0.96185 0.97081 1.03581 1.21038 0.93268 0.99323 1.00835 1.21538 0.98669 0.97123 0.99107 1.17906 0.92096 0.92946 0.90259 1.19685 0.95439 0.96820 1.40422 0.90981 1.26587 1.01744 0.97194 0.91686 1.69838 1.24300 1.15841 1.34736 0.85369 0.76538 0.78725 0.79827 1.18374 1.19035 1.18874 1.20536 0.92853 0.98177 1.00644 0.89306 0.90671 0.93865 0.91221 0.88326 0.85566 0.90171 0.86507 0.90364 0.89271 0.89305 0.94020 0.93731 0.85979 0.86274 0.87295 0.90121 0.88477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 10.23 71.98 0.74 -2.46 16 2 C 0.11 2.71 5.97 86.38 0.52 3.23 16 3 N -0.98 -29.30 2.78 -515.76 -1.43 -30.73 16 4 C 0.12 2.88 5.60 86.38 0.48 3.36 16 5 C 0.05 1.23 3.40 31.46 0.11 1.34 16 6 H 0.09 1.82 7.02 -2.39 -0.02 1.80 16 7 C -0.14 -2.62 6.62 32.25 0.21 -2.41 16 8 C -0.14 -3.13 7.00 31.86 0.22 -2.91 16 9 C 0.05 1.82 7.80 72.45 0.56 2.39 16 10 O -0.38 -13.97 9.76 -148.98 -1.45 -15.43 16 11 S 2.71 107.67 5.64 -56.49 -0.32 107.35 16 12 O -0.99 -41.18 16.22 -128.00 -2.08 -43.26 16 13 O -1.00 -43.82 15.78 -128.00 -2.02 -45.84 16 14 C -0.63 -29.23 5.89 22.22 0.13 -29.10 16 15 C -0.15 -6.88 9.53 22.46 0.21 -6.67 16 16 C -0.13 -5.95 10.02 22.22 0.22 -5.72 16 17 C -0.14 -7.66 8.69 22.73 0.20 -7.46 16 18 C 0.07 3.88 5.57 -21.29 -0.12 3.76 16 19 C -0.49 -26.63 9.06 23.46 0.21 -26.41 16 20 H 0.07 3.81 7.90 -2.91 -0.02 3.79 16 21 C 0.04 2.14 5.15 85.26 0.44 2.58 16 22 N -0.82 -41.84 10.95 21.83 0.24 -41.60 16 23 Si 0.97 37.88 29.59 68.60 2.03 39.91 16 24 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 25 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 26 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 27 C -0.10 -5.16 8.18 22.73 0.19 -4.98 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.07 1.15 7.98 -2.39 -0.02 1.13 16 30 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.07 1.85 7.57 -2.38 -0.02 1.83 16 32 H 0.10 1.90 6.80 -2.39 -0.02 1.88 16 33 H 0.13 2.05 7.98 -2.38 -0.02 2.03 16 34 H 0.08 2.35 6.84 -2.39 -0.02 2.33 16 35 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.08 1.54 8.06 -2.39 -0.02 1.52 16 37 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.12 4.95 7.60 -2.91 -0.02 4.93 16 42 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 43 H 0.11 5.93 6.18 -2.91 -0.02 5.91 16 44 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 45 H 0.10 4.97 7.60 -2.91 -0.02 4.95 16 Total: -1.00 -69.28 375.62 0.28 -69.01 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: 0.98 Total: 32.06 kcal Atomic # 6 Polarization: -75.80 SS G_CDS: 4.33 Total: -71.47 kcal Atomic # 7 Polarization: -71.14 SS G_CDS: -1.19 Total: -72.33 kcal Atomic # 8 Polarization: -98.98 SS G_CDS: -5.55 Total: -104.53 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Atomic # 16 Polarization: 107.67 SS G_CDS: -0.32 Total: 107.35 kcal Total: -69.28 0.28 -69.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619478448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.023 kcal (2) G-P(sol) polarization free energy of solvation -69.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds