Wall clock time and date at job start Tue Mar 31 2020 22:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42907 * 109.47036 * 2 1 4 4 C 1.42900 * 113.99961 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.49622 * 330.06682 * 4 3 2 6 6 C 1.53040 * 109.49575 * 90.16080 * 4 3 2 7 7 C 1.53044 * 109.53695 * 181.31532 * 6 4 3 8 8 C 1.53187 * 109.31429 * 298.63557 * 7 6 4 9 9 N 1.46924 * 108.77521 * 54.63195 * 8 7 6 10 10 S 1.65604 * 120.62806 * 126.41301 * 9 8 7 11 11 O 1.42099 * 106.40027 * 23.52196 * 10 9 8 12 12 O 1.42112 * 106.39941 * 156.44084 * 10 9 8 13 13 C 1.76198 * 107.21986 * 269.97814 * 10 9 8 14 14 C 1.38655 * 119.87203 * 89.99859 * 13 10 9 15 15 C 1.38621 * 120.49730 * 179.97438 * 14 13 10 16 16 C 1.37637 * 120.25124 * 359.97438 * 15 14 13 17 17 C 1.40700 * 119.74129 * 0.02660 * 16 15 14 18 18 C 1.41392 * 120.24215 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00476 * 204.38520 * 18 17 16 20 20 C 1.39949 * 120.00110 * 24.38195 * 18 17 16 21 21 N 1.30818 * 119.99786 * 17.85590 * 20 18 17 22 22 Si 1.86804 * 119.99906 * 197.85542 * 20 18 17 23 23 H 1.48500 * 109.47131 * 90.00251 * 22 20 18 24 24 H 1.48507 * 109.46905 * 209.99809 * 22 20 18 25 25 H 1.48493 * 109.47261 * 329.99809 * 22 20 18 26 26 C 1.37592 * 119.87733 * 269.73048 * 13 10 9 27 27 C 1.46922 * 118.74029 * 306.39420 * 9 8 7 28 28 H 1.09002 * 109.47137 * 300.00406 * 1 2 3 29 29 H 1.08997 * 109.46714 * 60.00324 * 1 2 3 30 30 H 1.08996 * 109.46575 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47098 * 240.00329 * 2 1 3 32 32 H 1.09001 * 109.47183 * 119.99531 * 2 1 3 33 33 H 1.09002 * 109.46113 * 301.33828 * 6 4 3 34 34 H 1.09003 * 109.46361 * 61.29691 * 6 4 3 35 35 H 1.09006 * 109.49310 * 178.68074 * 7 6 4 36 36 H 1.09000 * 109.51883 * 58.60416 * 7 6 4 37 37 H 1.09007 * 109.58472 * 294.84755 * 8 7 6 38 38 H 1.09000 * 109.70359 * 174.49105 * 8 7 6 39 39 H 1.07994 * 119.75296 * 359.96208 * 14 13 10 40 40 H 1.08001 * 119.87265 * 180.02562 * 15 14 13 41 41 H 1.07998 * 120.12818 * 180.02562 * 16 15 14 42 42 H 0.97007 * 119.99651 * 180.02562 * 21 20 18 43 43 H 1.08002 * 120.12822 * 359.97438 * 26 13 10 44 44 H 1.09004 * 109.59121 * 293.81670 * 27 9 8 45 45 H 1.09011 * 109.70762 * 173.46523 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8637 0.6014 0.5136 6 6 3.9404 1.5043 -1.4419 7 6 5.4683 1.5922 -1.4426 8 6 5.9020 2.8808 -0.7369 9 7 5.2963 2.9141 0.6012 10 16 6.2353 3.1359 1.9471 11 8 7.4158 3.7942 1.5087 12 8 5.3789 3.6628 2.9514 13 6 6.7331 1.5403 2.5046 14 6 7.9079 0.9781 2.0291 15 6 8.3121 -0.2761 2.4593 16 6 7.5496 -0.9774 3.3654 17 6 6.3555 -0.4167 3.8547 18 6 5.5643 -1.1276 4.7863 19 1 4.5076 -0.9194 4.8674 20 6 6.1503 -2.1010 5.6032 21 7 7.4478 -2.1213 5.7687 22 14 5.0797 -3.3714 6.4574 23 1 4.9237 -4.5585 5.5789 24 1 5.7198 -3.7807 7.7334 25 1 3.7448 -2.7850 6.7390 26 6 5.9573 0.8593 3.4143 27 6 3.8416 2.7474 0.7225 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.6283 0.6004 -1.9650 34 1 3.5263 2.3771 -1.9467 35 1 5.8317 1.6000 -2.4702 36 1 5.8827 0.7321 -0.9166 37 1 5.5653 3.7434 -1.3121 38 1 6.9881 2.9029 -0.6471 39 1 8.5126 1.5213 1.3180 40 1 9.2293 -0.7043 2.0826 41 1 7.8666 -1.9542 3.6996 42 1 7.8540 -2.7963 6.3347 43 1 5.0450 1.3011 3.7870 44 1 3.3368 3.5991 0.2665 45 1 3.5658 2.6799 1.7750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619478697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:33 Heat of formation + Delta-G solvation = -130.254125 kcal Electronic energy + Delta-G solvation = -28486.721664 eV Core-core repulsion = 24594.623756 eV Total energy + Delta-G solvation = -3892.097908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.21470 -39.46308 -38.39221 -37.87383 -36.95903 -35.69049 -33.27345 -32.55569 -31.93608 -31.60731 -30.43700 -27.36646 -25.67934 -24.08931 -23.69465 -23.53421 -22.81193 -21.57154 -20.16556 -19.58722 -18.64177 -17.78883 -17.54340 -17.22983 -16.84280 -16.56410 -16.55288 -16.15691 -15.68608 -15.24679 -15.13918 -14.81346 -14.71801 -14.40037 -14.32196 -14.07383 -13.75026 -13.45186 -13.31831 -13.12839 -13.10730 -13.09149 -12.97452 -12.88996 -12.88077 -12.59564 -12.54013 -12.22658 -12.09909 -11.85111 -11.78784 -11.67374 -11.56483 -11.34465 -11.16358 -10.52620 -9.99836 -9.83379 -9.58290 -8.75160 -6.47550 -0.60590 0.38487 0.82113 1.35385 1.44195 1.48719 1.92015 2.15820 2.52725 2.69932 2.74052 3.35612 3.47630 3.64589 3.81671 3.99578 4.07536 4.19297 4.24671 4.26995 4.28106 4.38934 4.41824 4.49958 4.53996 4.74844 4.77613 4.82383 4.85010 4.87808 4.92681 4.99132 5.03994 5.05638 5.13889 5.17600 5.20773 5.28393 5.38306 5.39406 5.53534 5.58857 5.86665 5.91453 6.08562 6.25755 6.50380 6.77661 6.82585 8.22965 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009278 B = 0.004832 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.195115 B = 5793.506963 C = 7695.430474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.393 6.393 4 C 0.074 3.926 5 H 0.050 0.950 6 C -0.128 4.128 7 C -0.130 4.130 8 C 0.109 3.891 9 N -0.987 5.987 10 S 2.710 3.290 11 O -0.979 6.979 12 O -0.992 6.992 13 C -0.638 4.638 14 C -0.145 4.145 15 C -0.122 4.122 16 C -0.139 4.139 17 C 0.064 3.936 18 C -0.497 4.497 19 H 0.078 0.922 20 C 0.037 3.963 21 N -0.824 5.824 22 Si 0.983 3.017 23 H -0.258 1.258 24 H -0.267 1.267 25 H -0.259 1.259 26 C -0.146 4.146 27 C 0.125 3.875 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.056 0.944 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.113 0.887 42 H 0.292 0.708 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.503 1.794 -14.771 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.028 4.028 3 O -0.312 6.312 4 C 0.015 3.985 5 H 0.068 0.932 6 C -0.166 4.166 7 C -0.169 4.169 8 C -0.015 4.015 9 N -0.827 5.827 10 S 2.804 3.196 11 O -0.969 6.969 12 O -0.983 6.983 13 C -0.727 4.727 14 C -0.165 4.165 15 C -0.141 4.141 16 C -0.159 4.159 17 C 0.061 3.939 18 C -0.527 4.527 19 H 0.096 0.904 20 C -0.178 4.178 21 N -0.449 5.449 22 Si 0.803 3.197 23 H -0.182 1.182 24 H -0.192 1.192 25 H -0.183 1.183 26 C -0.167 4.167 27 C -0.001 4.001 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.127 0.873 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.131 0.869 42 H 0.103 0.897 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.232 2.675 -14.268 16.218 hybrid contribution 0.081 -1.693 1.038 1.987 sum -7.151 0.982 -13.230 15.071 Atomic orbital electron populations 1.21741 0.92266 1.03320 1.02953 1.22693 0.96703 0.83004 1.00351 1.87813 1.20430 1.27713 1.95251 1.22420 0.81190 0.97551 0.97363 0.93209 1.21910 0.95776 1.03755 0.95132 1.21925 0.95320 0.97251 1.02427 1.21817 0.98699 0.99912 0.81041 1.57546 1.16024 1.88619 1.20507 1.01165 0.72313 0.73906 0.72232 1.93484 1.48221 1.73292 1.81916 1.93492 1.67728 1.78339 1.58710 1.30303 1.06401 1.24036 1.11942 1.20451 0.95857 0.96876 1.03346 1.21151 0.99540 0.95405 0.98005 1.21647 0.96900 1.00119 0.97249 1.18019 0.93113 0.90962 0.91804 1.19844 0.96721 1.18383 1.17707 0.90389 1.26757 0.96477 0.98709 0.95875 1.69821 1.12846 1.31247 1.31005 0.85185 0.78897 0.77766 0.77832 1.18209 1.19188 1.18324 1.20769 1.00336 0.94902 1.00711 1.21345 0.78687 0.98423 1.01634 0.92525 0.91299 0.89466 0.92195 0.94337 0.90794 0.89625 0.87318 0.92521 0.88171 0.88883 0.84962 0.85447 0.86876 0.89720 0.87766 0.88146 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 10.28 71.98 0.74 -1.79 16 2 C 0.05 1.08 6.47 71.98 0.47 1.54 16 3 O -0.39 -10.09 9.99 -148.98 -1.49 -11.58 16 4 C 0.07 1.90 2.76 30.67 0.08 1.98 16 5 H 0.05 1.48 7.79 -2.39 -0.02 1.46 16 6 C -0.13 -2.46 5.50 30.62 0.17 -2.29 16 7 C -0.13 -2.44 6.08 30.67 0.19 -2.25 16 8 C 0.11 2.36 6.38 86.36 0.55 2.91 16 9 N -0.99 -28.36 3.29 -513.07 -1.69 -30.05 16 10 S 2.71 102.33 5.69 -56.49 -0.32 102.01 16 11 O -0.98 -38.43 15.98 -128.00 -2.05 -40.48 16 12 O -0.99 -42.98 15.98 -128.00 -2.05 -45.02 16 13 C -0.64 -27.91 5.97 22.22 0.13 -27.77 16 14 C -0.14 -6.07 9.53 22.46 0.21 -5.85 16 15 C -0.12 -5.35 10.02 22.22 0.22 -5.13 16 16 C -0.14 -7.03 8.70 22.73 0.20 -6.83 16 17 C 0.06 3.41 5.58 -21.29 -0.12 3.29 16 18 C -0.50 -26.34 9.05 23.46 0.21 -26.13 16 19 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 20 C 0.04 1.83 5.14 85.26 0.44 2.27 16 21 N -0.82 -41.81 10.95 21.83 0.24 -41.57 16 22 Si 0.98 37.08 29.60 68.60 2.03 39.11 16 23 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 24 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 25 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 26 C -0.15 -7.24 9.26 22.73 0.21 -7.03 16 27 C 0.12 3.43 6.03 86.36 0.52 3.95 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.14 7.86 -2.39 -0.02 1.12 16 32 H 0.04 0.95 8.09 -2.39 -0.02 0.93 16 33 H 0.07 1.29 7.86 -2.39 -0.02 1.27 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.09 2.05 7.12 -2.39 -0.02 2.03 16 39 H 0.13 4.78 7.60 -2.91 -0.02 4.75 16 40 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 41 H 0.11 5.87 6.16 -2.91 -0.02 5.85 16 42 H 0.29 13.31 8.30 -92.70 -0.77 12.54 16 43 H 0.10 5.11 7.60 -2.91 -0.02 5.09 16 44 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.08 2.45 7.13 -2.38 -0.02 2.43 16 Total: -1.00 -65.60 376.14 -0.11 -65.72 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.98 Total: 31.00 kcal Atomic # 6 Polarization: -73.36 SS G_CDS: 4.23 Total: -69.14 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -1.45 Total: -71.62 kcal Atomic # 8 Polarization: -91.50 SS G_CDS: -5.58 Total: -97.08 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Atomic # 16 Polarization: 102.33 SS G_CDS: -0.32 Total: 102.01 kcal Total: -65.60 -0.11 -65.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619478697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.536 kcal (2) G-P(sol) polarization free energy of solvation -65.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds