Wall clock time and date at job start Tue Mar 31 2020 22:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47059 * 2 1 4 4 C 1.46492 * 120.00090 * 275.48133 * 3 2 1 5 5 C 1.53002 * 109.47171 * 295.68830 * 4 3 2 6 6 H 1.09005 * 110.45307 * 50.91557 * 5 4 3 7 7 C 1.54506 * 110.51461 * 173.51507 * 5 4 3 8 8 C 1.54480 * 104.06057 * 118.64570 * 7 5 4 9 9 O 1.44425 * 104.80183 * 23.98274 * 8 7 5 10 10 C 1.44418 * 105.27772 * 319.48482 * 9 8 7 11 11 S 1.65607 * 119.99848 * 95.75033 * 3 2 1 12 12 O 1.42096 * 106.40372 * 203.54216 * 11 3 2 13 13 O 1.42099 * 106.40337 * 336.46555 * 11 3 2 14 14 C 1.76206 * 107.21602 * 90.00119 * 11 3 2 15 15 C 1.38654 * 119.87486 * 90.00008 * 14 11 3 16 16 C 1.38608 * 120.50556 * 180.02562 * 15 14 11 17 17 C 1.37643 * 120.24285 * 359.97295 * 16 15 14 18 18 C 1.40697 * 119.74847 * 0.02562 * 17 16 15 19 19 C 1.41398 * 120.24472 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99226 * 208.50891 * 19 18 17 21 21 C 1.39939 * 120.00004 * 28.50744 * 19 18 17 22 22 N 1.30825 * 120.00147 * 9.87890 * 21 19 18 23 23 Si 1.86799 * 119.99799 * 189.87640 * 21 19 18 24 24 H 1.48504 * 109.47271 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47238 * 120.00204 * 23 21 19 26 26 H 1.48507 * 109.47032 * 240.00061 * 23 21 19 27 27 C 1.37597 * 119.87494 * 269.72539 * 14 11 3 28 28 H 1.09002 * 109.47538 * 305.00447 * 1 2 3 29 29 H 1.08998 * 109.47270 * 65.00937 * 1 2 3 30 30 H 1.09002 * 109.46901 * 185.00538 * 1 2 3 31 31 H 1.09003 * 109.47182 * 240.00264 * 2 1 3 32 32 H 1.09004 * 109.47370 * 120.00142 * 2 1 3 33 33 H 1.08994 * 109.47790 * 55.69284 * 4 3 2 34 34 H 1.09002 * 109.47256 * 175.69711 * 4 3 2 35 35 H 1.08994 * 110.51563 * 237.29249 * 7 5 4 36 36 H 1.09000 * 110.51023 * 0.02562 * 7 5 4 37 37 H 1.09006 * 110.36826 * 142.81205 * 8 7 5 38 38 H 1.09000 * 110.37588 * 265.14973 * 8 7 5 39 39 H 1.09002 * 110.37473 * 281.68337 * 10 9 8 40 40 H 1.09000 * 110.37229 * 159.34029 * 10 9 8 41 41 H 1.08007 * 119.75021 * 359.97438 * 15 14 11 42 42 H 1.07997 * 119.88080 * 180.02562 * 16 15 14 43 43 H 1.08003 * 120.12288 * 179.97438 * 17 16 15 44 44 H 0.97004 * 120.00077 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.12795 * 0.02562 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1482 2.1122 -1.2628 5 6 3.2047 1.4348 -2.1379 6 1 3.0035 0.3666 -2.2200 7 6 3.2472 2.0867 -3.5380 8 6 4.6820 2.6487 -3.6470 9 8 5.4608 1.8529 -2.7272 10 6 4.6190 1.6798 -1.5666 11 16 2.4297 2.1140 1.4270 12 8 2.3204 3.5133 1.2057 13 8 1.7171 1.4307 2.4490 14 6 4.1382 1.7865 1.7077 15 6 5.0981 2.6600 1.2197 16 6 6.4456 2.4149 1.4325 17 6 6.8452 1.2993 2.1327 18 6 5.8800 0.4060 2.6326 19 6 6.2788 -0.7435 3.3530 20 1 5.6611 -1.6293 3.3412 21 6 7.4739 -0.7334 4.0810 22 7 8.1236 0.3885 4.2563 23 14 8.1414 -2.3218 4.8025 24 1 7.2269 -3.4419 4.4644 25 1 9.4875 -2.5948 4.2379 26 1 8.2409 -2.1917 6.2785 27 6 4.5145 0.6681 2.4153 28 1 -0.3634 0.5895 0.8418 29 1 -0.3634 0.4341 -0.9314 30 1 -0.3633 -1.0238 0.0897 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.1905 2.1115 -1.7833 34 1 2.4500 3.1395 -1.0587 35 1 3.0694 1.3405 -4.3124 36 1 2.5158 2.8919 -3.6067 37 1 5.0590 2.5319 -4.6631 38 1 4.7021 3.6978 -3.3521 39 1 4.6293 2.5804 -0.9526 40 1 4.9475 0.8189 -0.9845 41 1 4.7935 3.5377 0.6688 42 1 7.1847 3.1022 1.0481 43 1 7.8958 1.1100 2.2970 44 1 8.9518 0.3956 4.7613 45 1 3.7650 -0.0088 2.7981 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619479430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:17 Heat of formation + Delta-G solvation = -104.310920 kcal Electronic energy + Delta-G solvation = -28985.962728 eV Core-core repulsion = 25094.989801 eV Total energy + Delta-G solvation = -3890.972927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.51570 -37.67837 -36.83414 -36.69809 -35.33685 -33.83372 -32.74065 -30.39868 -30.09495 -29.80315 -28.75870 -25.59454 -25.37095 -23.12014 -22.37311 -21.86293 -21.01614 -20.11653 -18.74235 -17.94707 -17.26689 -16.48170 -16.06056 -15.98925 -15.45860 -15.15635 -15.04510 -14.77649 -14.48797 -14.09532 -13.66905 -13.48833 -13.36970 -13.08647 -12.80016 -12.58495 -12.46491 -12.25826 -11.95104 -11.66239 -11.65138 -11.58304 -11.38971 -11.36538 -11.30556 -11.19957 -11.02332 -10.99025 -10.91188 -10.82898 -10.57941 -10.42389 -9.78889 -9.66262 -9.55848 -9.39099 -8.87200 -8.03202 -7.63947 -6.85483 -4.55366 0.91567 2.16705 2.61542 3.01777 3.04663 3.06806 3.38017 3.84984 4.06825 4.23497 4.41850 4.54843 4.63797 4.81331 4.91883 4.93547 5.09346 5.24543 5.31029 5.33970 5.38030 5.44391 5.50788 5.59853 5.69605 5.74363 5.79533 5.83729 5.90646 6.01821 6.08678 6.12036 6.21558 6.24238 6.32848 6.62269 6.66791 6.77231 6.90273 6.92284 7.06724 7.20987 7.34642 7.70963 7.81608 7.94611 8.40704 8.68636 8.71892 10.09043 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012044 B = 0.004400 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.323431 B = 6362.094598 C = 7319.869400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.119 3.881 3 N -0.999 5.999 4 C 0.128 3.872 5 C -0.142 4.142 6 H 0.089 0.911 7 C -0.148 4.148 8 C 0.042 3.958 9 O -0.374 6.374 10 C 0.043 3.957 11 S 2.680 3.320 12 O -0.974 6.974 13 O -0.966 6.966 14 C -0.637 4.637 15 C -0.139 4.139 16 C -0.121 4.121 17 C -0.107 4.107 18 C 0.090 3.910 19 C -0.460 4.460 20 H 0.081 0.919 21 C 0.072 3.928 22 N -0.803 5.803 23 Si 0.914 3.086 24 H -0.260 1.260 25 H -0.272 1.272 26 H -0.273 1.273 27 C -0.120 4.120 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.128 0.872 44 H 0.282 0.718 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.412 0.497 -12.744 15.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.006 4.006 3 N -0.835 5.835 4 C 0.003 3.997 5 C -0.162 4.162 6 H 0.107 0.893 7 C -0.187 4.187 8 C -0.036 4.036 9 O -0.292 6.292 10 C -0.033 4.033 11 S 2.777 3.223 12 O -0.965 6.965 13 O -0.956 6.956 14 C -0.729 4.729 15 C -0.160 4.160 16 C -0.140 4.140 17 C -0.127 4.127 18 C 0.087 3.913 19 C -0.490 4.490 20 H 0.099 0.901 21 C -0.145 4.145 22 N -0.429 5.429 23 Si 0.739 3.261 24 H -0.184 1.184 25 H -0.197 1.197 26 H -0.199 1.199 27 C -0.141 4.141 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.146 0.854 44 H 0.093 0.907 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.612 0.977 -12.122 14.902 hybrid contribution 0.935 -0.835 0.328 1.296 sum -7.676 0.142 -11.795 14.074 Atomic orbital electron populations 1.22185 0.96136 1.02323 1.02240 1.21210 0.94261 0.81558 1.03560 1.57680 1.79993 1.23751 1.22047 1.21385 0.98566 0.95716 0.84075 1.23007 0.96789 1.01743 0.94695 0.89278 1.22944 0.98097 1.00838 0.96776 1.23394 0.90263 0.95271 0.94636 1.89150 1.39438 1.72330 1.28296 1.23933 0.87815 1.03199 0.88374 1.02035 0.75118 0.72982 0.72144 1.93496 1.87478 1.30301 1.85184 1.93526 1.72107 1.75170 1.54826 1.29779 1.21309 1.06787 1.15071 1.20028 0.93034 0.98560 1.04391 1.20818 0.94659 0.98133 1.00392 1.21742 1.00552 0.94659 0.95744 1.17699 0.90294 0.93042 0.90259 1.19617 1.04642 0.99285 1.25464 0.90072 1.25908 0.95904 0.97667 0.95008 1.69740 1.14692 1.26709 1.31780 0.86152 0.79302 0.81721 0.78940 1.18360 1.19718 1.19864 1.20769 0.96710 0.95608 1.01046 0.91954 0.92643 0.91589 0.90461 0.89590 0.90630 0.88696 0.90650 0.90314 0.89518 0.92353 0.90875 0.88374 0.87765 0.88370 0.85405 0.90712 0.87154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 10.23 37.15 0.38 -1.44 16 2 C 0.12 1.45 5.97 -4.04 -0.02 1.43 16 3 N -1.00 -14.03 2.81 -114.39 -0.32 -14.35 16 4 C 0.13 1.51 5.01 -4.05 -0.02 1.49 16 5 C -0.14 -1.63 3.16 -89.05 -0.28 -1.91 16 6 H 0.09 0.97 6.62 -51.93 -0.34 0.62 16 7 C -0.15 -1.38 6.74 -25.16 -0.17 -1.55 16 8 C 0.04 0.46 7.63 37.93 0.29 0.74 16 9 O -0.37 -5.71 11.65 -35.23 -0.41 -6.12 16 10 C 0.04 0.64 6.07 37.94 0.23 0.87 16 11 S 2.68 49.74 5.64 -107.50 -0.61 49.14 16 12 O -0.97 -19.50 15.80 -57.17 -0.90 -20.40 16 13 O -0.97 -20.04 16.21 -57.17 -0.93 -20.96 16 14 C -0.64 -13.40 5.75 -39.66 -0.23 -13.63 16 15 C -0.14 -2.89 6.78 -39.29 -0.27 -3.16 16 16 C -0.12 -2.65 10.02 -39.66 -0.40 -3.04 16 17 C -0.11 -2.62 8.66 -38.87 -0.34 -2.95 16 18 C 0.09 2.28 5.56 -106.82 -0.59 1.69 16 19 C -0.46 -11.64 9.07 -37.74 -0.34 -11.98 16 20 H 0.08 1.96 7.87 -52.49 -0.41 1.55 16 21 C 0.07 1.74 5.27 -17.34 -0.09 1.65 16 22 N -0.80 -20.07 10.78 55.55 0.60 -19.47 16 23 Si 0.91 18.17 29.57 -169.99 -5.03 13.14 16 24 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 25 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 26 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 27 C -0.12 -2.78 9.26 -38.87 -0.36 -3.14 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.77 6.56 -51.93 -0.34 0.43 16 32 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.20 6.64 -51.93 -0.34 0.85 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.60 7.73 -51.93 -0.40 0.20 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 1.15 4.62 -51.93 -0.24 0.91 16 40 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 41 H 0.10 1.98 6.76 -52.48 -0.35 1.63 16 42 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 43 H 0.13 3.23 6.17 -52.48 -0.32 2.91 16 44 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 45 H 0.11 2.46 7.60 -52.49 -0.40 2.06 16 LS Contribution 368.62 15.07 5.55 5.55 Total: -1.00 -29.93 368.62 -10.75 -40.68 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.49 Total: 7.74 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: -2.21 Total: -34.94 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.28 Total: -33.82 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -2.24 Total: -47.49 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Atomic # 16 Polarization: 49.74 SS G_CDS: -0.61 Total: 49.14 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.93 -10.75 -40.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619479430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.634 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds