Wall clock time and date at job start Tue Mar 31 2020 22:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47059 * 2 1 4 4 C 1.46492 * 120.00090 * 275.48133 * 3 2 1 5 5 C 1.53002 * 109.47171 * 295.68830 * 4 3 2 6 6 H 1.09005 * 110.45307 * 50.91557 * 5 4 3 7 7 C 1.54506 * 110.51461 * 173.51507 * 5 4 3 8 8 C 1.54480 * 104.06057 * 118.64570 * 7 5 4 9 9 O 1.44425 * 104.80183 * 23.98274 * 8 7 5 10 10 C 1.44418 * 105.27772 * 319.48482 * 9 8 7 11 11 S 1.65607 * 119.99848 * 95.75033 * 3 2 1 12 12 O 1.42096 * 106.40372 * 203.54216 * 11 3 2 13 13 O 1.42099 * 106.40337 * 336.46555 * 11 3 2 14 14 C 1.76206 * 107.21602 * 90.00119 * 11 3 2 15 15 C 1.38654 * 119.87486 * 90.00008 * 14 11 3 16 16 C 1.38608 * 120.50556 * 180.02562 * 15 14 11 17 17 C 1.37643 * 120.24285 * 359.97295 * 16 15 14 18 18 C 1.40697 * 119.74847 * 0.02562 * 17 16 15 19 19 C 1.41398 * 120.24472 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99226 * 208.50891 * 19 18 17 21 21 C 1.39939 * 120.00004 * 28.50744 * 19 18 17 22 22 N 1.30825 * 120.00147 * 9.87890 * 21 19 18 23 23 Si 1.86799 * 119.99799 * 189.87640 * 21 19 18 24 24 H 1.48504 * 109.47271 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47238 * 120.00204 * 23 21 19 26 26 H 1.48507 * 109.47032 * 240.00061 * 23 21 19 27 27 C 1.37597 * 119.87494 * 269.72539 * 14 11 3 28 28 H 1.09002 * 109.47538 * 305.00447 * 1 2 3 29 29 H 1.08998 * 109.47270 * 65.00937 * 1 2 3 30 30 H 1.09002 * 109.46901 * 185.00538 * 1 2 3 31 31 H 1.09003 * 109.47182 * 240.00264 * 2 1 3 32 32 H 1.09004 * 109.47370 * 120.00142 * 2 1 3 33 33 H 1.08994 * 109.47790 * 55.69284 * 4 3 2 34 34 H 1.09002 * 109.47256 * 175.69711 * 4 3 2 35 35 H 1.08994 * 110.51563 * 237.29249 * 7 5 4 36 36 H 1.09000 * 110.51023 * 0.02562 * 7 5 4 37 37 H 1.09006 * 110.36826 * 142.81205 * 8 7 5 38 38 H 1.09000 * 110.37588 * 265.14973 * 8 7 5 39 39 H 1.09002 * 110.37473 * 281.68337 * 10 9 8 40 40 H 1.09000 * 110.37229 * 159.34029 * 10 9 8 41 41 H 1.08007 * 119.75021 * 359.97438 * 15 14 11 42 42 H 1.07997 * 119.88080 * 180.02562 * 16 15 14 43 43 H 1.08003 * 120.12288 * 179.97438 * 17 16 15 44 44 H 0.97004 * 120.00077 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.12795 * 0.02562 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1482 2.1122 -1.2628 5 6 3.2047 1.4348 -2.1379 6 1 3.0035 0.3666 -2.2200 7 6 3.2472 2.0867 -3.5380 8 6 4.6820 2.6487 -3.6470 9 8 5.4608 1.8529 -2.7272 10 6 4.6190 1.6798 -1.5666 11 16 2.4297 2.1140 1.4270 12 8 2.3204 3.5133 1.2057 13 8 1.7171 1.4307 2.4490 14 6 4.1382 1.7865 1.7077 15 6 5.0981 2.6600 1.2197 16 6 6.4456 2.4149 1.4325 17 6 6.8452 1.2993 2.1327 18 6 5.8800 0.4060 2.6326 19 6 6.2788 -0.7435 3.3530 20 1 5.6611 -1.6293 3.3412 21 6 7.4739 -0.7334 4.0810 22 7 8.1236 0.3885 4.2563 23 14 8.1414 -2.3218 4.8025 24 1 7.2269 -3.4419 4.4644 25 1 9.4875 -2.5948 4.2379 26 1 8.2409 -2.1917 6.2785 27 6 4.5145 0.6681 2.4153 28 1 -0.3634 0.5895 0.8418 29 1 -0.3634 0.4341 -0.9314 30 1 -0.3633 -1.0238 0.0897 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.1905 2.1115 -1.7833 34 1 2.4500 3.1395 -1.0587 35 1 3.0694 1.3405 -4.3124 36 1 2.5158 2.8919 -3.6067 37 1 5.0590 2.5319 -4.6631 38 1 4.7021 3.6978 -3.3521 39 1 4.6293 2.5804 -0.9526 40 1 4.9475 0.8189 -0.9845 41 1 4.7935 3.5377 0.6688 42 1 7.1847 3.1022 1.0481 43 1 7.8958 1.1100 2.2970 44 1 8.9518 0.3956 4.7613 45 1 3.7650 -0.0088 2.7981 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619479430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:16 Heat of formation + Delta-G solvation = -123.267317 kcal Electronic energy + Delta-G solvation = -28986.784739 eV Core-core repulsion = 25094.989801 eV Total energy + Delta-G solvation = -3891.794938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.52044 -39.45890 -38.36805 -37.79901 -36.91927 -35.65324 -33.70594 -31.95708 -31.62091 -31.23624 -29.74836 -27.38233 -26.45410 -24.12575 -23.67827 -23.23622 -22.78782 -21.11469 -20.23986 -19.42596 -18.70965 -17.78826 -17.57795 -17.10516 -16.92448 -16.62615 -16.36959 -16.04472 -15.87272 -15.23423 -15.15186 -15.02606 -14.60885 -14.31972 -14.09548 -13.81188 -13.64181 -13.59476 -13.31692 -13.26955 -13.09278 -13.06418 -12.94198 -12.81824 -12.64249 -12.47960 -12.37842 -12.19598 -12.10672 -11.94327 -11.82739 -11.54880 -11.44440 -11.22332 -11.17768 -10.66430 -10.03243 -9.80777 -9.47419 -8.66739 -6.46770 -0.55945 0.40397 0.83204 1.37015 1.43931 1.51772 2.02726 2.18271 2.58315 2.75376 3.12384 3.35274 3.47661 3.59919 3.79573 3.95090 4.03768 4.23210 4.27941 4.33198 4.34078 4.43420 4.45995 4.50249 4.63505 4.71999 4.82073 4.83671 4.88354 4.91022 4.94225 4.98062 5.04154 5.06491 5.16953 5.21717 5.22434 5.35291 5.40961 5.43010 5.53961 5.70306 5.88236 5.94046 5.95818 6.10028 6.53571 6.82366 6.84975 8.30110 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012044 B = 0.004400 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.323431 B = 6362.094598 C = 7319.869400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.110 3.890 3 N -0.987 5.987 4 C 0.121 3.879 5 C -0.135 4.135 6 H 0.099 0.901 7 C -0.137 4.137 8 C 0.030 3.970 9 O -0.404 6.404 10 C 0.040 3.960 11 S 2.702 3.298 12 O -0.986 6.986 13 O -0.989 6.989 14 C -0.643 4.643 15 C -0.130 4.130 16 C -0.124 4.124 17 C -0.129 4.129 18 C 0.062 3.938 19 C -0.496 4.496 20 H 0.080 0.920 21 C 0.031 3.969 22 N -0.836 5.836 23 Si 0.986 3.014 24 H -0.256 1.256 25 H -0.264 1.264 26 H -0.268 1.268 27 C -0.134 4.134 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.126 0.874 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.289 0.711 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.181 0.351 -15.014 18.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.015 4.015 3 N -0.826 5.826 4 C -0.003 4.003 5 C -0.155 4.155 6 H 0.117 0.883 7 C -0.176 4.176 8 C -0.047 4.047 9 O -0.324 6.324 10 C -0.036 4.036 11 S 2.796 3.204 12 O -0.976 6.976 13 O -0.980 6.980 14 C -0.731 4.731 15 C -0.151 4.151 16 C -0.143 4.143 17 C -0.149 4.149 18 C 0.059 3.941 19 C -0.526 4.526 20 H 0.098 0.902 21 C -0.182 4.182 22 N -0.463 5.463 23 Si 0.807 3.193 24 H -0.180 1.180 25 H -0.188 1.188 26 H -0.193 1.193 27 C -0.155 4.155 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.086 0.914 33 H 0.134 0.866 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.131 0.869 44 H 0.099 0.901 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.353 0.844 -14.393 17.749 hybrid contribution 1.406 -0.686 0.878 1.794 sum -8.947 0.158 -13.515 16.209 Atomic orbital electron populations 1.22181 0.94506 1.03358 1.02552 1.21487 0.95590 0.80260 1.04119 1.57400 1.79085 1.24738 1.21397 1.21719 1.00640 0.95010 0.82938 1.22969 0.94137 1.02651 0.95751 0.88301 1.22944 0.97323 1.01852 0.95440 1.23699 0.91199 0.95109 0.94647 1.89117 1.40993 1.73282 1.28969 1.23806 0.90143 1.01208 0.88466 1.01380 0.73585 0.72625 0.72859 1.93473 1.87121 1.31308 1.85726 1.93492 1.71873 1.75610 1.56983 1.30297 1.23719 1.05515 1.13582 1.20302 0.92550 0.98851 1.03394 1.21073 0.95911 0.97672 0.99672 1.21689 0.99809 0.96002 0.97424 1.18026 0.91406 0.93695 0.90951 1.19875 1.06067 0.99638 1.26999 0.90171 1.26754 0.95612 1.00935 0.94921 1.69803 1.15281 1.28620 1.32571 0.85091 0.78701 0.77416 0.78126 1.17982 1.18822 1.19306 1.20827 0.96046 0.96667 1.01920 0.94051 0.90313 0.89825 0.87654 0.91411 0.86613 0.89333 0.88794 0.87840 0.87711 0.91964 0.92218 0.91452 0.85608 0.86289 0.86949 0.90063 0.87201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 10.23 71.98 0.74 -2.35 16 2 C 0.11 2.44 5.97 86.38 0.52 2.95 16 3 N -0.99 -25.83 2.81 -515.81 -1.45 -27.28 16 4 C 0.12 2.45 5.01 86.38 0.43 2.88 16 5 C -0.13 -2.70 3.16 -9.78 -0.03 -2.73 16 6 H 0.10 1.81 6.62 -2.38 -0.02 1.79 16 7 C -0.14 -1.99 6.74 31.61 0.21 -1.78 16 8 C 0.03 0.58 7.63 72.49 0.55 1.13 16 9 O -0.40 -12.08 11.65 -148.98 -1.74 -13.82 16 10 C 0.04 1.18 6.07 72.49 0.44 1.62 16 11 S 2.70 98.94 5.64 -56.49 -0.32 98.62 16 12 O -0.99 -38.29 15.80 -128.00 -2.02 -40.31 16 13 O -0.99 -41.20 16.21 -128.00 -2.08 -43.28 16 14 C -0.64 -27.52 5.75 22.22 0.13 -27.39 16 15 C -0.13 -5.48 6.78 22.46 0.15 -5.33 16 16 C -0.12 -5.60 10.02 22.22 0.22 -5.38 16 17 C -0.13 -6.65 8.66 22.73 0.20 -6.45 16 18 C 0.06 3.30 5.56 -21.29 -0.12 3.19 16 19 C -0.50 -26.32 9.07 23.46 0.21 -26.10 16 20 H 0.08 4.08 7.87 -2.91 -0.02 4.06 16 21 C 0.03 1.56 5.27 85.26 0.45 2.01 16 22 N -0.84 -43.41 10.78 21.82 0.24 -43.17 16 23 Si 0.99 38.02 29.57 68.60 2.03 40.05 16 24 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 25 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 26 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 27 C -0.13 -6.46 9.26 22.73 0.21 -6.25 16 28 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.11 1.77 6.56 -2.39 -0.02 1.75 16 32 H 0.07 1.77 7.58 -2.38 -0.02 1.75 16 33 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 1.96 6.64 -2.39 -0.02 1.95 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.10 1.03 7.73 -2.39 -0.02 1.01 16 37 H 0.10 1.62 8.14 -2.38 -0.02 1.61 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 1.86 4.62 -2.39 -0.01 1.85 16 40 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.13 4.70 6.76 -2.91 -0.02 4.68 16 42 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 43 H 0.11 6.03 6.17 -2.91 -0.02 6.02 16 44 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 45 H 0.11 5.17 7.60 -2.91 -0.02 5.14 16 Total: -1.00 -68.05 368.62 -0.03 -68.08 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 1.00 Total: 31.09 kcal Atomic # 6 Polarization: -74.30 SS G_CDS: 4.31 Total: -69.98 kcal Atomic # 7 Polarization: -69.23 SS G_CDS: -1.21 Total: -70.45 kcal Atomic # 8 Polarization: -91.58 SS G_CDS: -5.83 Total: -97.41 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Atomic # 16 Polarization: 98.94 SS G_CDS: -0.32 Total: 98.62 kcal Total: -68.05 -0.03 -68.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619479430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.187 kcal (2) G-P(sol) polarization free energy of solvation -68.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds