Wall clock time and date at job start Tue Mar 31 2020 23:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99976 * 2 1 4 4 C 1.52998 * 109.47299 * 275.85198 * 3 2 1 5 5 O 1.42901 * 109.47125 * 64.68648 * 4 3 2 6 6 C 1.42903 * 114.00200 * 184.59651 * 5 4 3 7 7 C 1.52995 * 109.47007 * 184.63416 * 6 5 4 8 8 C 1.53005 * 117.49702 * 245.52171 * 7 6 5 9 9 C 1.53006 * 117.49845 * 176.89821 * 7 6 5 10 10 S 1.65596 * 119.99922 * 180.02562 * 2 1 3 11 11 O 1.42107 * 106.40138 * 28.50004 * 10 2 1 12 12 O 1.42102 * 106.40232 * 161.41563 * 10 2 1 13 13 C 1.76200 * 107.21907 * 274.95745 * 10 2 1 14 14 C 1.38647 * 119.87710 * 274.88372 * 13 10 2 15 15 C 1.38617 * 120.50351 * 179.72254 * 14 13 10 16 16 C 1.37641 * 120.24245 * 0.54936 * 15 14 13 17 17 C 1.40696 * 119.74598 * 359.72913 * 16 15 14 18 18 C 1.41396 * 120.24231 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99837 * 152.57151 * 18 17 16 20 20 C 1.39942 * 120.00431 * 332.57567 * 18 17 16 21 21 N 1.30820 * 120.00364 * 159.02337 * 20 18 17 22 22 Si 1.86804 * 119.99854 * 339.02352 * 20 18 17 23 23 H 1.48496 * 109.46904 * 94.12100 * 22 20 18 24 24 H 1.48497 * 109.47276 * 214.12063 * 22 20 18 25 25 H 1.48500 * 109.47091 * 334.12243 * 22 20 18 26 26 C 1.37598 * 119.87346 * 95.15966 * 13 10 2 27 27 H 1.08990 * 109.47506 * 89.99689 * 1 2 3 28 28 H 1.08993 * 109.46937 * 210.00217 * 1 2 3 29 29 H 1.09003 * 109.46780 * 329.99875 * 1 2 3 30 30 H 1.09001 * 109.47093 * 155.85425 * 3 2 1 31 31 H 1.08999 * 109.47576 * 35.85345 * 3 2 1 32 32 H 1.08996 * 109.47282 * 304.68381 * 4 3 2 33 33 H 1.08997 * 109.47383 * 184.68292 * 4 3 2 34 34 H 1.08994 * 109.47186 * 64.62918 * 6 5 4 35 35 H 1.08997 * 109.46938 * 304.63268 * 6 5 4 36 36 H 1.08998 * 115.55375 * 31.22938 * 7 6 5 37 37 H 1.09001 * 117.49816 * 359.97438 * 8 7 6 38 38 H 1.08993 * 117.49702 * 145.02471 * 8 7 6 39 39 H 1.08998 * 117.50314 * 214.97609 * 9 7 6 40 40 H 1.09002 * 117.49451 * 0.02562 * 9 7 6 41 41 H 1.07998 * 119.75065 * 0.02562 * 14 13 10 42 42 H 1.07996 * 119.87624 * 180.25881 * 15 14 13 43 43 H 1.08003 * 120.12634 * 179.74587 * 16 15 14 44 44 H 0.97006 * 120.00493 * 180.02562 * 21 20 18 45 45 H 1.08003 * 120.12509 * 359.97386 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3252 1.7840 -1.4349 5 8 1.0271 2.0896 -1.9486 6 6 1.0234 2.4825 -3.3225 7 6 -0.3922 2.8946 -3.7312 8 6 -1.1066 2.0307 -4.7726 9 6 -0.5920 3.4202 -5.1542 10 16 2.2930 -1.4341 -0.0006 11 8 1.4561 -2.3803 -0.6515 12 8 3.6126 -1.1354 -0.4350 13 6 2.4278 -1.9593 1.6759 14 6 3.4630 -1.4852 2.4670 15 6 3.5782 -1.8853 3.7892 16 6 2.6701 -2.7683 4.3278 17 6 1.6189 -3.2604 3.5327 18 6 0.6798 -4.1675 4.0755 19 1 -0.3232 -4.2093 3.6771 20 6 1.0498 -5.0110 5.1290 21 7 0.1322 -5.5391 5.8975 22 14 2.8542 -5.3831 5.4380 23 1 3.3878 -4.4381 6.4516 24 1 2.9944 -6.7748 5.9365 25 1 3.6147 -5.2319 4.1715 26 6 1.5086 -2.8428 2.1933 27 1 -0.3634 0.0001 -1.0275 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 3.1913 1.1145 0.4204 31 1 1.6579 1.9999 0.6019 32 1 2.7906 1.0185 -2.0558 33 1 2.9407 2.6834 -1.4447 34 1 1.3511 1.6465 -3.9403 35 1 1.7013 3.3246 -3.4614 36 1 -0.9996 3.3368 -2.9415 37 1 -0.5678 1.1690 -5.1668 38 1 -2.1841 1.9044 -4.6680 39 1 -1.3310 4.2079 -5.3007 40 1 0.2852 3.4720 -5.7992 41 1 4.1824 -0.7951 2.0514 42 1 4.3861 -1.5065 4.3975 43 1 2.7640 -3.0820 5.3570 44 1 0.3887 -6.1235 6.6280 45 1 0.7054 -3.2140 1.5741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619490434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:01 Heat of formation + Delta-G solvation = -74.461190 kcal Electronic energy + Delta-G solvation = -27310.386381 eV Core-core repulsion = 23420.707836 eV Total energy + Delta-G solvation = -3889.678545 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -38.73889 -37.91457 -37.18102 -36.77590 -35.58019 -35.35781 -33.82014 -30.74084 -30.23442 -30.03884 -27.14341 -25.51072 -25.32702 -22.72461 -22.57749 -22.31351 -20.92527 -20.86761 -18.83504 -17.97303 -17.35925 -16.69205 -16.51947 -16.30015 -15.85652 -15.42642 -15.27178 -14.81674 -14.79260 -14.35417 -13.94088 -13.77645 -13.23782 -13.01211 -12.93529 -12.86514 -12.61312 -12.29010 -12.18025 -11.87199 -11.83990 -11.73222 -11.71169 -11.48833 -11.44754 -11.21244 -11.12322 -11.06487 -10.78391 -10.71807 -10.45603 -10.35768 -10.04108 -9.75582 -9.66050 -9.30545 -8.83138 -8.28143 -7.91029 -7.13258 -4.65411 0.86246 1.91303 2.40782 2.97580 3.09879 3.18783 3.24606 3.38112 3.66186 3.83142 4.12378 4.27783 4.51785 4.59628 4.73050 4.74864 4.86014 5.02112 5.05906 5.16247 5.19884 5.29569 5.31385 5.33730 5.39883 5.53995 5.60613 5.74361 5.80499 5.82309 5.83007 5.92117 5.98869 6.11010 6.17031 6.20388 6.45779 6.52381 6.75682 6.85576 7.07417 7.08551 7.19228 7.38706 7.60583 7.76779 8.15750 8.41677 8.59174 9.88174 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023905 B = 0.002672 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.042237 B =10475.939933 C =10985.654301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.997 5.997 3 C 0.129 3.871 4 C 0.042 3.958 5 O -0.377 6.377 6 C 0.091 3.909 7 C -0.151 4.151 8 C -0.177 4.177 9 C -0.177 4.177 10 S 2.685 3.315 11 O -0.964 6.964 12 O -0.972 6.972 13 C -0.624 4.624 14 C -0.161 4.161 15 C -0.090 4.090 16 C -0.203 4.203 17 C 0.073 3.927 18 C -0.441 4.441 19 H 0.096 0.904 20 C 0.084 3.916 21 N -0.795 5.795 22 Si 0.908 3.092 23 H -0.267 1.267 24 H -0.286 1.286 25 H -0.244 1.244 26 C -0.107 4.107 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.288 0.712 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.216 15.419 -12.865 20.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.834 5.834 3 C 0.003 3.997 4 C -0.036 4.036 5 O -0.296 6.296 6 C 0.014 3.986 7 C -0.170 4.170 8 C -0.214 4.214 9 C -0.214 4.214 10 S 2.781 3.219 11 O -0.954 6.954 12 O -0.962 6.962 13 C -0.715 4.715 14 C -0.182 4.182 15 C -0.109 4.109 16 C -0.223 4.223 17 C 0.069 3.931 18 C -0.469 4.469 19 H 0.114 0.886 20 C -0.136 4.136 21 N -0.418 5.418 22 Si 0.733 3.267 23 H -0.193 1.193 24 H -0.213 1.213 25 H -0.167 1.167 26 C -0.128 4.128 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.132 0.868 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.099 0.901 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.185 14.818 -13.315 19.957 hybrid contribution 0.818 -0.209 1.013 1.319 sum 2.003 14.609 -12.302 19.203 Atomic orbital electron populations 1.21393 0.77798 1.02704 1.02143 1.57386 1.15593 1.20539 1.89883 1.21312 0.97726 0.85728 0.94909 1.23088 0.85008 0.99351 0.96179 1.87901 1.28648 1.88098 1.24977 1.21986 0.95029 0.98123 0.83433 1.22137 0.97230 1.04649 0.92950 1.23077 1.00918 0.94335 1.03035 1.22968 1.03458 0.97823 0.97110 1.01963 0.72756 0.72160 0.75062 1.93539 1.68399 1.59849 1.73639 1.93504 1.37232 1.84258 1.81243 1.30028 1.06067 1.12122 1.23248 1.19987 0.98688 1.04982 0.94549 1.20693 0.97849 0.97565 0.94836 1.21312 0.99757 1.02059 0.99157 1.17783 0.91860 0.92567 0.90852 1.19530 0.99337 1.15602 1.12409 0.88628 1.26184 1.00424 0.94074 0.92946 1.69696 1.36561 1.23335 1.12172 0.86382 0.82420 0.77010 0.80850 1.19345 1.21303 1.16749 1.20849 0.98343 0.98462 0.95134 0.92219 0.91306 0.91209 0.88190 0.89466 0.92682 0.92226 0.93282 0.93100 0.86847 0.88589 0.88539 0.88483 0.88784 0.87358 0.87943 0.87539 0.90109 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.41 9.63 59.85 0.58 1.98 16 2 N -1.00 -14.63 3.17 -121.76 -0.39 -15.02 16 3 C 0.13 1.54 5.84 -4.04 -0.02 1.51 16 4 C 0.04 0.47 6.28 37.16 0.23 0.70 16 5 O -0.38 -4.38 9.47 -35.23 -0.33 -4.71 16 6 C 0.09 0.87 6.22 37.15 0.23 1.10 16 7 C -0.15 -1.32 6.06 -90.62 -0.55 -1.87 16 8 C -0.18 -1.43 10.18 -26.72 -0.27 -1.70 16 9 C -0.18 -1.23 10.25 -26.72 -0.27 -1.50 16 10 S 2.69 49.53 5.59 -107.50 -0.60 48.93 16 11 O -0.96 -20.12 16.40 -57.17 -0.94 -21.06 16 12 O -0.97 -18.73 16.19 -57.17 -0.93 -19.66 16 13 C -0.62 -13.07 5.96 -39.66 -0.24 -13.31 16 14 C -0.16 -3.27 9.53 -39.29 -0.37 -3.65 16 15 C -0.09 -1.89 10.02 -39.66 -0.40 -2.28 16 16 C -0.20 -4.74 7.31 -38.87 -0.28 -5.03 16 17 C 0.07 1.83 5.14 -106.83 -0.55 1.28 16 18 C -0.44 -11.57 9.56 -37.74 -0.36 -11.93 16 19 H 0.10 2.59 8.06 -52.48 -0.42 2.17 16 20 C 0.08 2.14 5.38 -17.34 -0.09 2.05 16 21 N -0.79 -20.39 13.93 55.55 0.77 -19.62 16 22 Si 0.91 20.12 24.56 -169.99 -4.18 15.94 16 23 H -0.27 -5.67 6.59 56.52 0.37 -5.29 16 24 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.24 -5.62 7.00 56.52 0.40 -5.23 16 26 C -0.11 -2.48 9.27 -38.87 -0.36 -2.84 16 27 H 0.06 0.78 8.01 -51.93 -0.42 0.36 16 28 H 0.07 0.96 7.92 -51.93 -0.41 0.55 16 29 H 0.07 0.79 7.95 -51.93 -0.41 0.38 16 30 H 0.10 1.12 7.44 -51.93 -0.39 0.74 16 31 H 0.09 0.88 7.98 -51.93 -0.41 0.46 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.47 7.88 -51.93 -0.41 0.07 16 35 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.10 0.79 8.04 -51.93 -0.42 0.37 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.11 1.91 7.72 -52.49 -0.41 1.51 16 42 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 43 H 0.11 2.44 4.57 -52.48 -0.24 2.20 16 44 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16 45 H 0.12 2.68 7.50 -52.48 -0.39 2.29 16 LS Contribution 383.04 15.07 5.77 5.77 Total: -1.00 -30.34 383.04 -10.43 -40.77 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.88 Total: 4.13 kcal Atomic # 6 Polarization: -32.75 SS G_CDS: -2.73 Total: -35.48 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.39 Total: -34.63 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -2.20 Total: -45.43 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.18 Total: 15.94 kcal Atomic # 16 Polarization: 49.53 SS G_CDS: -0.60 Total: 48.93 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.34 -10.43 -40.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619490434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.693 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds