Wall clock time and date at job start Tue Mar 31 2020 23:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99582 * 2 1 4 4 C 1.53003 * 109.47025 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47211 * 185.38338 * 4 3 2 6 6 C 1.52993 * 115.55131 * 293.33729 * 5 4 3 7 7 N 1.46508 * 109.47293 * 280.10726 * 6 5 4 8 8 S 1.65599 * 120.00132 * 164.21311 * 7 6 5 9 9 O 1.42099 * 106.40514 * 311.46709 * 8 7 6 10 10 O 1.42096 * 106.40355 * 178.54281 * 8 7 6 11 11 C 1.76203 * 107.21755 * 65.00334 * 8 7 6 12 12 C 1.38652 * 119.87657 * 269.98073 * 11 8 7 13 13 C 1.38617 * 120.50372 * 180.02562 * 12 11 8 14 14 C 1.37638 * 120.24581 * 359.97438 * 13 12 11 15 15 C 1.40700 * 119.74336 * 359.97438 * 14 13 12 16 16 C 1.41401 * 120.24084 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99937 * 333.01553 * 16 15 14 18 18 C 1.39944 * 119.99551 * 153.02017 * 16 15 14 19 19 N 1.30817 * 120.00549 * 347.27185 * 18 16 15 20 20 Si 1.86802 * 119.99551 * 167.26764 * 18 16 15 21 21 H 1.48503 * 109.47211 * 60.00069 * 20 18 16 22 22 H 1.48505 * 109.46886 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47402 * 299.99713 * 20 18 16 24 24 C 1.37598 * 119.87623 * 89.99564 * 11 8 7 25 25 C 1.53001 * 117.51682 * 79.04009 * 5 4 3 26 26 C 1.52996 * 60.00274 * 107.48127 * 25 5 4 27 27 H 1.09004 * 109.46705 * 60.00109 * 1 2 3 28 28 H 1.08999 * 109.46600 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47026 * 299.99981 * 1 2 3 30 30 H 1.09001 * 109.47244 * 59.99936 * 3 2 1 31 31 H 1.08999 * 109.47026 * 299.99440 * 3 2 1 32 32 H 1.09007 * 109.47008 * 65.38442 * 4 3 2 33 33 H 1.08995 * 109.47087 * 305.38714 * 4 3 2 34 34 H 1.09005 * 109.47273 * 160.11004 * 6 5 4 35 35 H 1.09003 * 109.47399 * 40.10586 * 6 5 4 36 36 H 0.96995 * 119.99569 * 344.22112 * 7 6 5 37 37 H 1.08003 * 119.75026 * 359.97438 * 12 11 8 38 38 H 1.07995 * 119.87642 * 179.97438 * 13 12 11 39 39 H 1.07996 * 120.12553 * 180.02562 * 14 13 12 40 40 H 0.97003 * 120.00677 * 180.02562 * 19 18 16 41 41 H 1.08005 * 120.12264 * 0.25978 * 24 11 8 42 42 H 1.08999 * 117.49931 * 214.97108 * 25 5 4 43 43 H 1.08997 * 117.49886 * 359.97438 * 25 5 4 44 44 H 1.09002 * 117.49711 * 252.51612 * 26 25 5 45 45 H 1.09000 * 117.52305 * 107.47829 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 6 4.1571 2.5762 0.1360 6 6 3.9356 3.5162 -1.0506 7 7 4.8839 3.1875 -2.1179 8 16 4.6348 3.7591 -3.6520 9 8 3.2796 3.4749 -3.9710 10 8 5.7297 3.3013 -4.4335 11 6 4.7721 5.5144 -3.5832 12 6 3.6472 6.2859 -3.3342 13 6 3.7403 7.6678 -3.2778 14 6 4.9534 8.2894 -3.4685 15 6 6.1017 7.5165 -3.7208 16 6 7.3534 8.1441 -3.9177 17 1 7.3975 9.1515 -4.3043 18 6 8.5351 7.4596 -3.6116 19 7 8.4882 6.3511 -2.9185 20 14 10.1794 8.1290 -4.1928 21 1 10.3916 9.4838 -3.6230 22 1 11.2687 7.2263 -3.7412 23 1 10.1850 8.2090 -5.6756 24 6 5.9951 6.1144 -3.7771 25 6 4.1982 3.1992 1.5328 26 6 5.4863 2.6862 0.8858 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6885 1.8465 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8643 0.7292 -0.9335 33 1 3.8503 0.5631 0.8387 34 1 4.0907 4.5469 -0.7316 35 1 2.9170 3.3999 -1.4211 36 1 5.6576 2.6349 -1.9258 37 1 2.6912 5.8066 -3.1838 38 1 2.8575 8.2589 -3.0836 39 1 5.0237 9.3661 -3.4237 40 1 9.3073 5.8768 -2.7060 41 1 6.8691 5.5117 -3.9754 42 1 4.0674 4.2788 1.6064 43 1 3.7819 2.6181 2.3555 44 1 5.9176 1.7673 1.2830 45 1 6.2030 3.4280 0.5334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619492043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:28 Heat of formation + Delta-G solvation = -89.928948 kcal Electronic energy + Delta-G solvation = -27663.663481 eV Core-core repulsion = 23773.314203 eV Total energy + Delta-G solvation = -3890.349278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.08801 -37.65852 -37.57219 -36.53811 -35.19739 -33.86669 -33.79653 -31.09400 -30.26769 -29.60257 -26.83114 -25.93637 -25.48308 -23.55334 -22.28020 -21.81442 -21.16456 -19.28250 -18.82226 -17.85917 -16.97251 -16.53073 -16.35762 -16.05914 -15.86816 -15.09710 -15.05066 -14.87053 -14.79672 -14.48701 -14.11915 -13.43441 -13.31896 -13.29389 -12.89771 -12.69870 -12.35189 -11.95506 -11.91293 -11.54388 -11.51168 -11.48483 -11.47059 -11.41711 -11.32055 -11.20716 -11.11685 -11.00714 -10.79666 -10.65127 -10.24935 -9.92735 -9.90400 -9.78546 -9.59208 -9.39286 -9.01661 -8.13050 -7.62364 -6.91579 -4.55678 1.13445 2.17246 2.69461 3.00738 3.02408 3.08015 3.37848 3.63307 3.83122 3.90414 4.29190 4.47886 4.58376 4.63455 4.83991 4.89867 5.06547 5.13676 5.15279 5.22543 5.33785 5.36219 5.38418 5.48753 5.59373 5.61507 5.64921 5.86682 5.90937 5.99855 6.03936 6.11619 6.16150 6.19295 6.23809 6.48101 6.83019 6.84339 7.01703 7.07167 7.20098 7.34653 7.44819 7.61657 7.76226 7.98844 8.31798 8.66481 8.69670 10.04738 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015172 B = 0.003286 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.068870 B = 8519.392797 C = 9039.827502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.059 3.941 4 C -0.078 4.078 5 C -0.134 4.134 6 C 0.157 3.843 7 N -1.115 6.115 8 S 2.690 3.310 9 O -0.979 6.979 10 O -0.970 6.970 11 C -0.644 4.644 12 C -0.157 4.157 13 C -0.108 4.108 14 C -0.184 4.184 15 C 0.090 3.910 16 C -0.459 4.459 17 H 0.081 0.919 18 C 0.072 3.928 19 N -0.798 5.798 20 Si 0.915 3.085 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.262 1.262 24 C -0.050 4.050 25 C -0.166 4.166 26 C -0.164 4.164 27 H 0.043 0.957 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.415 0.585 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.286 0.714 41 H 0.140 0.860 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.611 -7.800 9.186 14.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.116 4.116 5 C -0.136 4.136 6 C 0.031 3.969 7 N -0.873 5.873 8 S 2.786 3.214 9 O -0.969 6.969 10 O -0.960 6.960 11 C -0.736 4.736 12 C -0.178 4.178 13 C -0.128 4.128 14 C -0.205 4.205 15 C 0.086 3.914 16 C -0.489 4.489 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.423 5.423 20 Si 0.740 3.260 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.187 1.187 24 C -0.071 4.071 25 C -0.204 4.204 26 C -0.201 4.201 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.249 0.751 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.157 0.843 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.686 -8.585 8.512 14.326 hybrid contribution 0.991 1.103 0.303 1.513 sum -6.695 -7.482 8.815 13.360 Atomic orbital electron populations 1.22727 0.81109 1.02550 1.00099 1.87839 1.19680 1.28388 1.95485 1.22585 0.93992 0.84425 1.00736 1.20968 0.92840 0.94220 1.03556 1.21502 1.02525 0.96461 0.93120 1.20736 0.92720 0.97372 0.86104 1.55484 1.36831 1.67423 1.27597 1.01597 0.73042 0.74839 0.71965 1.93497 1.36330 1.84826 1.82261 1.93547 1.54545 1.81292 1.66640 1.29951 1.01163 1.22847 1.19614 1.20024 0.95267 0.93973 1.08586 1.20629 0.96619 0.94157 1.01349 1.21257 0.93537 0.98303 1.07362 1.17708 0.92739 0.91612 0.89324 1.19571 0.89839 1.01296 1.38168 0.90061 1.25940 1.01765 0.94267 0.92594 1.69677 1.31185 1.14395 1.27064 0.86241 0.79875 0.79548 0.80386 1.18976 1.20099 1.18667 1.21301 0.93975 0.96207 0.95664 1.23070 1.01680 1.01244 0.94357 1.23068 0.90753 1.03501 1.02796 0.93854 0.89813 0.94202 0.93127 0.92564 0.90336 0.90884 0.91080 0.90188 0.75083 0.87702 0.88479 0.88274 0.90308 0.84279 0.88219 0.88610 0.88573 0.87717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.72 10.70 -35.23 -0.38 -5.09 16 3 C 0.06 0.65 5.72 37.16 0.21 0.86 16 4 C -0.08 -0.86 5.47 -26.73 -0.15 -1.00 16 5 C -0.13 -1.49 1.57 -154.51 -0.24 -1.73 16 6 C 0.16 2.14 6.09 -4.04 -0.02 2.12 16 7 N -1.12 -17.45 5.97 -10.61 -0.06 -17.51 16 8 S 2.69 53.57 5.73 -107.50 -0.62 52.96 16 9 O -0.98 -20.57 16.73 -57.17 -0.96 -21.53 16 10 O -0.97 -22.02 17.26 -57.17 -0.99 -23.01 16 11 C -0.64 -14.49 5.94 -39.66 -0.24 -14.73 16 12 C -0.16 -3.36 9.53 -39.29 -0.37 -3.74 16 13 C -0.11 -2.30 10.02 -39.66 -0.40 -2.69 16 14 C -0.18 -4.28 9.80 -38.87 -0.38 -4.66 16 15 C 0.09 2.30 5.56 -106.82 -0.59 1.70 16 16 C -0.46 -11.67 9.07 -37.74 -0.34 -12.01 16 17 H 0.08 1.96 7.88 -52.49 -0.41 1.55 16 18 C 0.07 1.74 5.23 -17.35 -0.09 1.65 16 19 N -0.80 -19.70 10.84 55.55 0.60 -19.10 16 20 Si 0.92 18.17 29.58 -169.99 -5.03 13.15 16 21 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 22 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 23 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 24 C -0.05 -1.27 8.13 -38.88 -0.32 -1.59 16 25 C -0.17 -1.60 9.90 -26.73 -0.26 -1.87 16 26 C -0.16 -1.72 9.72 -26.73 -0.26 -1.98 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.66 7.03 -51.93 -0.37 0.29 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 34 H 0.07 0.99 7.95 -51.93 -0.41 0.58 16 35 H 0.08 1.08 6.40 -51.93 -0.33 0.75 16 36 H 0.42 5.81 8.49 -34.47 -0.29 5.51 16 37 H 0.10 2.02 7.60 -52.48 -0.40 1.62 16 38 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 40 H 0.29 6.45 8.30 -40.82 -0.34 6.11 16 41 H 0.14 3.68 5.72 -52.48 -0.30 3.38 16 42 H 0.10 0.97 8.09 -51.93 -0.42 0.55 16 43 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 387.65 15.07 5.84 5.84 Total: -1.00 -30.56 387.65 -10.64 -41.21 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -6.72 Total: 11.37 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: -2.34 Total: -38.27 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.54 Total: -36.61 kcal Atomic # 8 Polarization: -47.31 SS G_CDS: -2.32 Total: -49.63 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.15 kcal Atomic # 16 Polarization: 53.57 SS G_CDS: -0.62 Total: 52.96 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.56 -10.64 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619492043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.724 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds