Wall clock time and date at job start Tue Mar 31 2020 22:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47302 * 2 1 4 4 O 1.42897 * 109.46962 * 240.00710 * 2 1 3 5 5 C 1.53001 * 109.47618 * 120.00364 * 2 1 3 6 6 H 1.08998 * 109.49379 * 60.06412 * 5 2 1 7 7 C 1.53038 * 109.49677 * 300.00113 * 5 2 1 8 8 C 1.53041 * 109.53949 * 178.64952 * 7 5 2 9 9 C 1.53190 * 109.31045 * 61.36028 * 8 7 5 10 10 N 1.46923 * 108.89838 * 305.29466 * 9 8 7 11 11 S 1.65598 * 120.63569 * 233.68043 * 10 9 8 12 12 O 1.42101 * 106.40495 * 203.53808 * 11 10 9 13 13 O 1.42097 * 106.40150 * 336.46158 * 11 10 9 14 14 C 1.76206 * 107.21487 * 89.99939 * 11 10 9 15 15 C 1.38656 * 119.87456 * 90.00553 * 14 11 10 16 16 C 1.38618 * 120.49825 * 179.97438 * 15 14 11 17 17 C 1.37634 * 120.24900 * 359.97438 * 16 15 14 18 18 C 1.40700 * 119.74817 * 0.02562 * 17 16 15 19 19 C 1.41392 * 120.24474 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99739 * 204.38691 * 19 18 17 21 21 C 1.39937 * 120.00241 * 24.38405 * 19 18 17 22 22 N 1.30825 * 120.00156 * 17.85837 * 21 19 18 23 23 Si 1.86810 * 119.99983 * 197.85818 * 21 19 18 24 24 H 1.48496 * 109.47071 * 94.69607 * 23 21 19 25 25 H 1.48501 * 109.46942 * 214.69057 * 23 21 19 26 26 H 1.48493 * 109.47011 * 334.69466 * 23 21 19 27 27 C 1.37597 * 119.87496 * 269.72483 * 14 11 10 28 28 C 1.47215 * 118.55119 * 53.53905 * 10 9 8 29 29 H 1.09005 * 109.47011 * 299.99564 * 1 2 3 30 30 H 1.09001 * 109.47435 * 59.99151 * 1 2 3 31 31 H 1.08993 * 109.47311 * 180.02562 * 1 2 3 32 32 H 0.96706 * 114.00099 * 299.99972 * 4 2 1 33 33 H 1.08997 * 109.46007 * 58.62713 * 7 5 2 34 34 H 1.09007 * 109.44617 * 298.66358 * 7 5 2 35 35 H 1.09000 * 109.49418 * 301.41633 * 8 7 5 36 36 H 1.08995 * 109.52586 * 181.32700 * 8 7 5 37 37 H 1.09007 * 109.58960 * 65.15848 * 9 8 7 38 38 H 1.09001 * 109.58559 * 185.43875 * 9 8 7 39 39 H 1.08000 * 119.74978 * 359.97438 * 15 14 11 40 40 H 1.08001 * 119.87106 * 179.97438 * 16 15 14 41 41 H 1.08002 * 120.12598 * 180.02562 * 17 16 15 42 42 H 0.97004 * 119.99961 * 179.97438 * 22 21 19 43 43 H 1.08002 * 120.12862 * 0.02562 * 27 14 11 44 44 H 1.09004 * 109.52666 * 186.67342 * 28 10 9 45 45 H 1.08999 * 109.55808 * 66.30291 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6735 -1.1668 5 6 2.0401 -0.7213 1.2492 6 1 1.6779 -1.7494 1.2489 7 6 1.5303 -0.0005 2.4992 8 6 2.0121 -0.7406 3.7491 9 6 3.5437 -0.7383 3.7803 10 7 4.0462 -1.2996 2.5190 11 16 5.1199 -2.5603 2.5248 12 8 5.8114 -2.5043 1.2846 13 8 5.7775 -2.5214 3.7838 14 6 4.1768 -4.0486 2.5018 15 6 3.8235 -4.6237 1.2906 16 6 3.0823 -5.7946 1.2574 17 6 2.6891 -6.3997 2.4294 18 6 3.0419 -5.8251 3.6643 19 6 2.6441 -6.4382 4.8746 20 1 2.5527 -5.8479 5.7744 21 6 2.3686 -7.8098 4.9067 22 7 2.8003 -8.5864 3.9465 23 14 1.3844 -8.5321 6.3208 24 1 -0.0487 -8.6070 5.9390 25 1 1.8867 -9.8954 6.6279 26 1 1.5329 -7.6681 7.5193 27 6 3.7987 -4.6387 3.6858 28 6 3.5719 -0.7188 1.2521 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.7209 -1.5951 -1.2331 33 1 0.4406 0.0208 2.4871 34 1 1.9133 1.0201 2.5112 35 1 1.6503 -1.7685 3.7253 36 1 1.6294 -0.2405 4.6388 37 1 3.9054 0.2835 3.8954 38 1 3.8930 -1.3457 4.6153 39 1 4.1281 -4.1558 0.3661 40 1 2.8123 -6.2336 0.3083 41 1 2.1120 -7.3122 2.4012 42 1 2.6097 -9.5372 3.9689 43 1 4.0785 -4.1913 4.6282 44 1 3.9400 -1.3155 0.4174 45 1 3.9359 0.3046 1.1609 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619492361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:07 Heat of formation + Delta-G solvation = -143.359127 kcal Electronic energy + Delta-G solvation = -28650.315473 eV Core-core repulsion = 24757.649289 eV Total energy + Delta-G solvation = -3892.666184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.20096 -39.45303 -38.37239 -37.65770 -36.94359 -35.68024 -33.91782 -32.35737 -31.92608 -31.59485 -30.13318 -27.35698 -25.70067 -24.62241 -23.66454 -22.81111 -22.56117 -21.24073 -20.15613 -19.50915 -18.56930 -17.76940 -17.33916 -17.13614 -16.86317 -16.50833 -16.34028 -15.70549 -15.50106 -15.21997 -15.14072 -15.11653 -14.62046 -14.36254 -14.25776 -13.90312 -13.73967 -13.32955 -13.31407 -13.20541 -13.10010 -13.08278 -12.99640 -12.86806 -12.64939 -12.59040 -12.42197 -12.20930 -11.94878 -11.84948 -11.56354 -11.53182 -11.43096 -11.17769 -11.15481 -10.73555 -9.95305 -9.80737 -9.57434 -8.74145 -6.46542 -0.55783 0.39805 0.82876 1.36635 1.45139 1.50494 2.02954 2.16931 2.54885 2.75989 3.31154 3.48671 3.52567 3.65613 3.84580 3.96702 4.12169 4.17431 4.28607 4.41549 4.41753 4.43980 4.47840 4.58388 4.65826 4.81350 4.85958 4.88291 4.89610 4.95754 4.98471 5.04346 5.07538 5.16761 5.19374 5.28697 5.35826 5.40019 5.43263 5.53961 5.55477 5.68150 5.87489 5.92388 6.09151 6.51347 6.78783 6.83570 6.87275 8.24004 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012546 B = 0.003934 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.302620 B = 7116.179043 C = 7544.253872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.112 3.888 3 H 0.108 0.892 4 O -0.581 6.581 5 C -0.132 4.132 6 H 0.065 0.935 7 C -0.105 4.105 8 C -0.134 4.134 9 C 0.112 3.888 10 N -0.991 5.991 11 S 2.706 3.294 12 O -0.987 6.987 13 O -0.994 6.994 14 C -0.636 4.636 15 C -0.147 4.147 16 C -0.121 4.121 17 C -0.141 4.141 18 C 0.065 3.935 19 C -0.497 4.497 20 H 0.080 0.920 21 C 0.037 3.963 22 N -0.825 5.825 23 Si 0.984 3.016 24 H -0.259 1.259 25 H -0.269 1.269 26 H -0.258 1.258 27 C -0.144 4.144 28 C 0.127 3.873 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.385 0.615 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.292 0.708 43 H 0.107 0.893 44 H 0.080 0.920 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.622 15.354 -3.630 17.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.053 3.947 3 H 0.126 0.874 4 O -0.388 6.388 5 C -0.152 4.152 6 H 0.084 0.916 7 C -0.143 4.143 8 C -0.173 4.173 9 C -0.013 4.013 10 N -0.830 5.830 11 S 2.801 3.199 12 O -0.978 6.978 13 O -0.984 6.984 14 C -0.725 4.725 15 C -0.167 4.167 16 C -0.140 4.140 17 C -0.161 4.161 18 C 0.062 3.938 19 C -0.526 4.526 20 H 0.098 0.902 21 C -0.179 4.179 22 N -0.450 5.450 23 Si 0.805 3.195 24 H -0.183 1.183 25 H -0.193 1.193 26 H -0.182 1.182 27 C -0.165 4.165 28 C 0.002 3.998 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.234 0.766 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.131 0.869 42 H 0.102 0.898 43 H 0.125 0.875 44 H 0.099 0.901 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.377 15.774 -3.793 17.433 hybrid contribution -0.946 -2.048 0.728 2.371 sum -7.323 13.726 -3.065 15.856 Atomic orbital electron populations 1.22502 0.95273 1.02741 1.03390 1.21943 0.93669 0.96508 0.82609 0.87375 1.86540 1.77761 1.30214 1.44311 1.22257 0.94848 1.00975 0.97159 0.91643 1.21534 1.01467 0.99415 0.91845 1.21921 0.94215 1.01167 1.00035 1.21681 0.95526 1.00502 0.83581 1.57632 1.63862 1.48100 1.13426 1.01177 0.73690 0.73040 0.71995 1.93478 1.71563 1.87211 1.45519 1.93479 1.73087 1.87290 1.44554 1.30306 1.20222 1.22373 0.99630 1.20404 1.03084 0.98187 0.95055 1.21119 0.99153 0.95845 0.97850 1.21643 1.01538 1.00627 0.92256 1.18020 0.89877 0.91699 0.94223 1.19868 1.42153 0.94358 0.96216 0.90168 1.26774 0.94031 0.97033 1.00028 1.69829 1.34510 1.07006 1.33701 0.85150 0.78716 0.77823 0.77835 1.18298 1.19336 1.18154 1.20776 1.00992 0.99624 0.95095 1.21609 0.94733 1.00121 0.83310 0.89963 0.91663 0.92659 0.76615 0.89873 0.89670 0.93381 0.88437 0.88442 0.90714 0.85464 0.85571 0.86897 0.89757 0.87517 0.90135 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 9.18 71.98 0.66 -1.75 16 2 C 0.11 1.81 3.17 30.59 0.10 1.91 16 3 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 4 O -0.58 -11.62 12.79 -148.98 -1.91 -13.53 16 5 C -0.13 -2.55 2.11 -10.72 -0.02 -2.57 16 6 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 7 C -0.11 -1.64 4.85 30.62 0.15 -1.50 16 8 C -0.13 -2.70 6.08 30.67 0.19 -2.51 16 9 C 0.11 2.67 6.37 86.36 0.55 3.22 16 10 N -0.99 -28.44 3.30 -512.39 -1.69 -30.13 16 11 S 2.71 104.25 5.69 -56.49 -0.32 103.93 16 12 O -0.99 -40.86 16.01 -128.00 -2.05 -42.91 16 13 O -0.99 -43.07 15.97 -128.00 -2.04 -45.12 16 14 C -0.64 -28.09 5.97 22.22 0.13 -27.96 16 15 C -0.15 -6.26 9.53 22.46 0.21 -6.04 16 16 C -0.12 -5.33 10.02 22.22 0.22 -5.11 16 17 C -0.14 -7.12 8.70 22.73 0.20 -6.92 16 18 C 0.06 3.44 5.58 -21.29 -0.12 3.32 16 19 C -0.50 -26.11 9.05 23.46 0.21 -25.90 16 20 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 21 C 0.04 1.79 5.14 85.25 0.44 2.23 16 22 N -0.82 -41.85 10.95 21.82 0.24 -41.61 16 23 Si 0.98 36.83 29.60 68.60 2.03 38.86 16 24 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 25 H -0.27 -9.64 7.11 99.48 0.71 -8.94 16 26 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 27 C -0.14 -7.09 9.26 22.73 0.21 -6.87 16 28 C 0.13 3.03 5.45 86.30 0.47 3.50 16 29 H 0.08 0.88 6.40 -2.38 -0.02 0.86 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.38 6.11 9.05 -74.05 -0.67 5.44 16 33 H 0.08 1.08 6.36 -2.39 -0.02 1.07 16 34 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.07 2.05 7.12 -2.39 -0.02 2.03 16 39 H 0.13 4.80 7.60 -2.91 -0.02 4.78 16 40 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 41 H 0.11 5.86 6.16 -2.91 -0.02 5.84 16 42 H 0.29 13.29 8.30 -92.71 -0.77 12.52 16 43 H 0.11 5.14 7.60 -2.91 -0.02 5.12 16 44 H 0.08 2.18 6.88 -2.38 -0.02 2.16 16 45 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -67.45 370.79 -1.81 -69.26 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: 0.33 Total: 34.20 kcal Atomic # 6 Polarization: -76.55 SS G_CDS: 3.60 Total: -72.95 kcal Atomic # 7 Polarization: -70.29 SS G_CDS: -1.45 Total: -71.74 kcal Atomic # 8 Polarization: -95.56 SS G_CDS: -6.00 Total: -101.55 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Atomic # 16 Polarization: 104.25 SS G_CDS: -0.32 Total: 103.93 kcal Total: -67.45 -1.81 -69.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619492361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.096 kcal (2) G-P(sol) polarization free energy of solvation -67.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds