Wall clock time and date at job start Tue Mar 31 2020 23:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99748 * 2 1 4 4 C 1.52999 * 109.47292 * 273.40312 * 3 2 1 5 5 H 1.09007 * 110.43549 * 307.86536 * 4 3 2 6 6 C 1.54263 * 110.48699 * 185.32460 * 4 3 2 7 7 C 1.53881 * 106.59548 * 217.71189 * 6 4 3 8 8 C 1.54265 * 106.60157 * 359.97438 * 7 6 4 9 9 C 1.54890 * 110.48441 * 70.40291 * 4 3 2 10 10 H 1.09005 * 110.75219 * 38.31313 * 9 4 3 11 11 O 1.42895 * 110.75998 * 274.93752 * 9 4 3 12 12 S 1.65599 * 119.99970 * 179.97438 * 2 1 3 13 13 O 1.42100 * 106.40364 * 28.54427 * 12 2 1 14 14 O 1.42105 * 106.40164 * 161.46181 * 12 2 1 15 15 C 1.76197 * 107.21920 * 274.99991 * 12 2 1 16 16 C 1.38652 * 119.87919 * 269.73061 * 15 12 2 17 17 C 1.38610 * 120.50532 * 179.72546 * 16 15 12 18 18 C 1.37648 * 120.24339 * 0.54425 * 17 16 15 19 19 C 1.40696 * 119.74527 * 359.73201 * 18 17 16 20 20 C 1.41392 * 120.24130 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00157 * 207.57569 * 20 19 18 22 22 C 1.39944 * 120.00247 * 27.58482 * 20 19 18 23 23 N 1.30823 * 120.00203 * 11.94717 * 22 20 19 24 24 Si 1.86796 * 120.00039 * 191.94690 * 22 20 19 25 25 H 1.48503 * 109.47289 * 89.99958 * 24 22 20 26 26 H 1.48502 * 109.47291 * 209.99664 * 24 22 20 27 27 H 1.48501 * 109.47237 * 329.99682 * 24 22 20 28 28 C 1.37599 * 119.87496 * 90.00052 * 15 12 2 29 29 H 1.09004 * 109.46960 * 90.00435 * 1 2 3 30 30 H 1.08998 * 109.47489 * 209.99465 * 1 2 3 31 31 H 1.09001 * 109.47104 * 330.00411 * 1 2 3 32 32 H 1.09000 * 109.46697 * 153.40948 * 3 2 1 33 33 H 1.08995 * 109.47379 * 33.41066 * 3 2 1 34 34 H 1.08994 * 110.03359 * 336.99854 * 6 4 3 35 35 H 1.08995 * 110.03285 * 98.38302 * 6 4 3 36 36 H 1.08999 * 110.02658 * 119.28900 * 7 6 4 37 37 H 1.09002 * 110.03211 * 240.71415 * 7 6 4 38 38 H 1.09000 * 110.48593 * 142.28352 * 8 7 6 39 39 H 1.08992 * 110.48645 * 264.80290 * 8 7 6 40 40 H 0.96704 * 114.00082 * 180.02562 * 11 9 4 41 41 H 1.08008 * 119.74879 * 359.97438 * 16 15 12 42 42 H 1.08002 * 119.88065 * 180.25526 * 17 16 15 43 43 H 1.07999 * 120.12492 * 179.75528 * 18 17 16 44 44 H 0.96997 * 120.00444 * 180.02562 * 23 22 20 45 45 H 1.07998 * 120.12751 * 359.97438 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3783 1.7533 -1.4399 5 1 2.8141 0.9656 -2.0546 6 6 3.2609 3.0179 -1.4772 7 6 2.6746 3.9311 -2.5682 8 6 1.4565 3.1892 -3.1563 9 6 1.0229 2.2146 -2.0309 10 1 0.4301 2.7342 -1.2780 11 8 0.3009 1.1050 -2.5688 12 16 2.2930 -1.4341 0.0006 13 8 1.4566 -2.3807 -0.6503 14 8 3.6129 -1.1356 -0.4329 15 6 2.4267 -1.9584 1.6775 16 6 3.5192 -1.5697 2.4377 17 6 3.6347 -1.9700 3.7597 18 6 2.6690 -2.7687 4.3291 19 6 1.5589 -3.1740 3.5656 20 6 0.5605 -3.9939 4.1401 21 1 -0.0203 -4.6560 3.5150 22 6 0.3247 -3.9475 5.5188 23 7 0.8521 -2.9925 6.2408 24 14 -0.7430 -5.2491 6.3281 25 1 0.1071 -6.3864 6.7630 26 1 -1.4282 -4.6637 7.5083 27 1 -1.7568 -5.7321 5.3563 28 6 1.4494 -2.7567 2.2260 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5138 32 1 3.1749 1.1239 0.4600 33 1 1.6362 2.0123 0.5658 34 1 3.2308 3.5229 -0.5118 35 1 4.2875 2.7495 -1.7260 36 1 2.3600 4.8792 -2.1321 37 1 3.4166 4.1059 -3.3473 38 1 0.6546 3.8919 -3.3826 39 1 1.7421 2.6364 -4.0511 40 1 -0.5552 1.3410 -2.9516 41 1 4.2840 -0.9470 1.9975 42 1 4.4878 -1.6579 4.3438 43 1 2.7629 -3.0827 5.3582 44 1 0.6890 -2.9605 7.1964 45 1 0.6013 -3.0616 1.6310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619493466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:58 Heat of formation + Delta-G solvation = -115.770896 kcal Electronic energy + Delta-G solvation = -28160.821868 eV Core-core repulsion = 24269.352000 eV Total energy + Delta-G solvation = -3891.469868 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.24209 -37.61038 -36.59820 -35.71763 -35.17972 -35.12553 -33.79493 -30.23532 -30.03498 -29.72530 -27.75926 -26.27739 -25.44669 -23.57349 -21.78299 -20.97338 -20.90983 -20.12203 -18.59946 -17.75850 -17.47551 -16.87205 -15.97693 -15.86710 -15.44413 -15.14136 -14.99962 -14.64376 -14.28180 -14.14248 -13.47589 -13.40271 -13.30930 -13.16743 -12.60175 -12.55082 -12.38791 -11.91933 -11.88832 -11.86218 -11.57317 -11.50724 -11.37626 -11.33958 -11.31647 -11.23431 -10.93805 -10.88832 -10.81874 -10.63239 -10.57858 -10.35572 -9.89382 -9.71947 -9.55448 -9.37598 -8.58900 -7.98859 -7.64310 -6.85652 -4.52925 1.09824 2.23919 2.64959 3.01639 3.05620 3.08302 3.59151 3.85677 4.05662 4.34483 4.39787 4.45231 4.49800 4.78198 4.97359 5.00435 5.13244 5.23357 5.27501 5.36462 5.42662 5.44846 5.59275 5.68603 5.74348 5.77375 5.89373 5.95209 5.95769 6.05630 6.07292 6.18425 6.26355 6.32738 6.37239 6.67181 6.77648 6.82093 7.01573 7.09742 7.25340 7.40834 7.61185 7.74802 7.84739 7.97302 8.43574 8.70533 8.74801 10.09217 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020545 B = 0.003059 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.524895 B = 9151.367383 C = 9475.625647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.993 5.993 3 C 0.136 3.864 4 C -0.106 4.106 5 H 0.090 0.910 6 C -0.118 4.118 7 C -0.121 4.121 8 C -0.158 4.158 9 C 0.104 3.896 10 H 0.064 0.936 11 O -0.549 6.549 12 S 2.689 3.311 13 O -0.968 6.968 14 O -0.975 6.975 15 C -0.637 4.637 16 C -0.143 4.143 17 C -0.124 4.124 18 C -0.113 4.113 19 C 0.090 3.910 20 C -0.461 4.461 21 H 0.082 0.918 22 C 0.073 3.927 23 N -0.803 5.803 24 Si 0.914 3.086 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.261 1.261 28 C -0.122 4.122 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.372 0.628 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.127 0.873 44 H 0.282 0.718 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.882 13.290 -10.503 16.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.829 5.829 3 C 0.010 3.990 4 C -0.127 4.127 5 H 0.108 0.892 6 C -0.157 4.157 7 C -0.159 4.159 8 C -0.196 4.196 9 C 0.045 3.955 10 H 0.082 0.918 11 O -0.354 6.354 12 S 2.785 3.215 13 O -0.959 6.959 14 O -0.966 6.966 15 C -0.728 4.728 16 C -0.165 4.165 17 C -0.143 4.143 18 C -0.133 4.133 19 C 0.087 3.913 20 C -0.491 4.491 21 H 0.100 0.900 22 C -0.144 4.144 23 N -0.429 5.429 24 Si 0.739 3.261 25 H -0.192 1.192 26 H -0.202 1.202 27 H -0.185 1.185 28 C -0.143 4.143 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.219 0.781 41 H 0.123 0.877 42 H 0.116 0.884 43 H 0.145 0.855 44 H 0.093 0.907 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.070 12.650 -10.807 16.638 hybrid contribution -1.061 -0.040 1.170 1.580 sum -1.132 12.610 -9.637 15.911 Atomic orbital electron populations 1.21642 0.78458 1.02176 1.03102 1.57279 1.15153 1.20584 1.89904 1.21257 0.96950 0.85610 0.95193 1.22481 0.94157 0.98362 0.97662 0.89181 1.22091 0.99495 0.94790 0.99276 1.22015 0.97227 0.98370 0.98255 1.23087 0.98238 0.98735 0.99542 1.22863 0.92610 0.86314 0.93706 0.91842 1.86645 1.35307 1.33838 1.79626 1.01786 0.72606 0.72096 0.74984 1.93515 1.68531 1.59999 1.73829 1.93486 1.37375 1.84307 1.81398 1.29946 1.04957 1.14698 1.23236 1.20096 0.97215 1.04477 0.94662 1.20837 0.98825 1.00110 0.94572 1.21705 0.92436 0.98442 1.00714 1.17703 0.91959 0.90993 0.90639 1.19616 1.16543 1.20462 0.92499 0.90007 1.25912 0.95659 0.95346 0.97485 1.69747 1.37400 1.27671 1.08093 0.86202 0.80161 0.80829 0.78923 1.19245 1.20248 1.18478 1.20829 0.97178 0.99279 0.97059 0.90443 0.91582 0.92225 0.89726 0.90560 0.91109 0.90861 0.91739 0.91665 0.91774 0.90782 0.78127 0.87676 0.88380 0.85499 0.90722 0.87106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.29 9.29 59.85 0.56 1.85 16 2 N -0.99 -15.85 3.09 -121.76 -0.38 -16.22 16 3 C 0.14 1.80 4.73 -4.04 -0.02 1.78 16 4 C -0.11 -1.27 2.81 -88.96 -0.25 -1.52 16 5 H 0.09 1.32 8.14 -51.92 -0.42 0.90 16 6 C -0.12 -1.10 6.38 -25.61 -0.16 -1.26 16 7 C -0.12 -0.95 6.80 -25.61 -0.17 -1.12 16 8 C -0.16 -1.30 6.56 -24.98 -0.16 -1.46 16 9 C 0.10 1.03 3.13 -24.64 -0.08 0.95 16 10 H 0.06 0.56 7.96 -51.93 -0.41 0.14 16 11 O -0.55 -5.96 10.32 -35.23 -0.36 -6.32 16 12 S 2.69 54.02 5.59 -107.50 -0.60 53.42 16 13 O -0.97 -21.73 16.52 -57.17 -0.94 -22.68 16 14 O -0.98 -20.56 16.10 -57.17 -0.92 -21.48 16 15 C -0.64 -14.43 5.97 -39.66 -0.24 -14.67 16 16 C -0.14 -3.20 9.53 -39.29 -0.37 -3.57 16 17 C -0.12 -2.84 10.02 -39.66 -0.40 -3.23 16 18 C -0.11 -2.86 8.67 -38.87 -0.34 -3.20 16 19 C 0.09 2.37 5.56 -106.83 -0.59 1.78 16 20 C -0.46 -11.98 9.07 -37.74 -0.34 -12.32 16 21 H 0.08 2.05 7.87 -52.48 -0.41 1.64 16 22 C 0.07 1.77 5.24 -17.34 -0.09 1.68 16 23 N -0.80 -20.02 10.83 55.55 0.60 -19.42 16 24 Si 0.91 18.29 29.58 -169.99 -5.03 13.26 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 26 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 27 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 28 C -0.12 -3.01 9.26 -38.87 -0.36 -3.37 16 29 H 0.08 1.02 5.45 -51.93 -0.28 0.74 16 30 H 0.07 1.02 7.92 -51.93 -0.41 0.60 16 31 H 0.06 0.69 7.92 -51.93 -0.41 0.28 16 32 H 0.08 1.15 7.53 -51.93 -0.39 0.76 16 33 H 0.08 0.83 7.81 -51.93 -0.41 0.43 16 34 H 0.07 0.58 7.84 -51.93 -0.41 0.17 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.37 2.39 9.12 45.56 0.42 2.81 16 41 H 0.11 2.10 7.59 -52.48 -0.40 1.70 16 42 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 43 H 0.13 3.26 6.17 -52.49 -0.32 2.93 16 44 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 45 H 0.11 2.62 7.60 -52.49 -0.40 2.22 16 LS Contribution 372.35 15.07 5.61 5.61 Total: -1.00 -31.74 372.35 -10.98 -42.72 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -5.94 Total: 8.80 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: -3.02 Total: -37.69 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.23 Total: -35.65 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -2.23 Total: -50.48 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Atomic # 16 Polarization: 54.02 SS G_CDS: -0.60 Total: 53.42 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.74 -10.98 -42.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.050 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds