Wall clock time and date at job start Tue Mar 31 2020 23:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99748 * 2 1 4 4 C 1.52999 * 109.47292 * 273.40312 * 3 2 1 5 5 H 1.09007 * 110.43549 * 307.86536 * 4 3 2 6 6 C 1.54263 * 110.48699 * 185.32460 * 4 3 2 7 7 C 1.53881 * 106.59548 * 217.71189 * 6 4 3 8 8 C 1.54265 * 106.60157 * 359.97438 * 7 6 4 9 9 C 1.54890 * 110.48441 * 70.40291 * 4 3 2 10 10 H 1.09005 * 110.75219 * 38.31313 * 9 4 3 11 11 O 1.42895 * 110.75998 * 274.93752 * 9 4 3 12 12 S 1.65599 * 119.99970 * 179.97438 * 2 1 3 13 13 O 1.42100 * 106.40364 * 28.54427 * 12 2 1 14 14 O 1.42105 * 106.40164 * 161.46181 * 12 2 1 15 15 C 1.76197 * 107.21920 * 274.99991 * 12 2 1 16 16 C 1.38652 * 119.87919 * 269.73061 * 15 12 2 17 17 C 1.38610 * 120.50532 * 179.72546 * 16 15 12 18 18 C 1.37648 * 120.24339 * 0.54425 * 17 16 15 19 19 C 1.40696 * 119.74527 * 359.73201 * 18 17 16 20 20 C 1.41392 * 120.24130 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00157 * 207.57569 * 20 19 18 22 22 C 1.39944 * 120.00247 * 27.58482 * 20 19 18 23 23 N 1.30823 * 120.00203 * 11.94717 * 22 20 19 24 24 Si 1.86796 * 120.00039 * 191.94690 * 22 20 19 25 25 H 1.48503 * 109.47289 * 89.99958 * 24 22 20 26 26 H 1.48502 * 109.47291 * 209.99664 * 24 22 20 27 27 H 1.48501 * 109.47237 * 329.99682 * 24 22 20 28 28 C 1.37599 * 119.87496 * 90.00052 * 15 12 2 29 29 H 1.09004 * 109.46960 * 90.00435 * 1 2 3 30 30 H 1.08998 * 109.47489 * 209.99465 * 1 2 3 31 31 H 1.09001 * 109.47104 * 330.00411 * 1 2 3 32 32 H 1.09000 * 109.46697 * 153.40948 * 3 2 1 33 33 H 1.08995 * 109.47379 * 33.41066 * 3 2 1 34 34 H 1.08994 * 110.03359 * 336.99854 * 6 4 3 35 35 H 1.08995 * 110.03285 * 98.38302 * 6 4 3 36 36 H 1.08999 * 110.02658 * 119.28900 * 7 6 4 37 37 H 1.09002 * 110.03211 * 240.71415 * 7 6 4 38 38 H 1.09000 * 110.48593 * 142.28352 * 8 7 6 39 39 H 1.08992 * 110.48645 * 264.80290 * 8 7 6 40 40 H 0.96704 * 114.00082 * 180.02562 * 11 9 4 41 41 H 1.08008 * 119.74879 * 359.97438 * 16 15 12 42 42 H 1.08002 * 119.88065 * 180.25526 * 17 16 15 43 43 H 1.07999 * 120.12492 * 179.75528 * 18 17 16 44 44 H 0.96997 * 120.00444 * 180.02562 * 23 22 20 45 45 H 1.07998 * 120.12751 * 359.97438 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3783 1.7533 -1.4399 5 1 2.8141 0.9656 -2.0546 6 6 3.2609 3.0179 -1.4772 7 6 2.6746 3.9311 -2.5682 8 6 1.4565 3.1892 -3.1563 9 6 1.0229 2.2146 -2.0309 10 1 0.4301 2.7342 -1.2780 11 8 0.3009 1.1050 -2.5688 12 16 2.2930 -1.4341 0.0006 13 8 1.4566 -2.3807 -0.6503 14 8 3.6129 -1.1356 -0.4329 15 6 2.4267 -1.9584 1.6775 16 6 3.5192 -1.5697 2.4377 17 6 3.6347 -1.9700 3.7597 18 6 2.6690 -2.7687 4.3291 19 6 1.5589 -3.1740 3.5656 20 6 0.5605 -3.9939 4.1401 21 1 -0.0203 -4.6560 3.5150 22 6 0.3247 -3.9475 5.5188 23 7 0.8521 -2.9925 6.2408 24 14 -0.7430 -5.2491 6.3281 25 1 0.1071 -6.3864 6.7630 26 1 -1.4282 -4.6637 7.5083 27 1 -1.7568 -5.7321 5.3563 28 6 1.4494 -2.7567 2.2260 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5138 32 1 3.1749 1.1239 0.4600 33 1 1.6362 2.0123 0.5658 34 1 3.2308 3.5229 -0.5118 35 1 4.2875 2.7495 -1.7260 36 1 2.3600 4.8792 -2.1321 37 1 3.4166 4.1059 -3.3473 38 1 0.6546 3.8919 -3.3826 39 1 1.7421 2.6364 -4.0511 40 1 -0.5552 1.3410 -2.9516 41 1 4.2840 -0.9470 1.9975 42 1 4.4878 -1.6579 4.3438 43 1 2.7629 -3.0827 5.3582 44 1 0.6890 -2.9605 7.1964 45 1 0.6013 -3.0616 1.6310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619493466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:57 Heat of formation + Delta-G solvation = -137.203310 kcal Electronic energy + Delta-G solvation = -28161.751247 eV Core-core repulsion = 24269.352000 eV Total energy + Delta-G solvation = -3892.399248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.05055 -39.46502 -38.28099 -36.91124 -36.75283 -35.95796 -35.65423 -31.92021 -31.61398 -31.09221 -28.46737 -27.42180 -27.25466 -24.66958 -23.60128 -22.81955 -21.61889 -20.93672 -20.27399 -19.32397 -18.38451 -18.28923 -17.76926 -17.20101 -16.92067 -16.53951 -16.15977 -15.99971 -15.50741 -15.16176 -15.10122 -15.00721 -14.36276 -14.27451 -14.22164 -13.75498 -13.68908 -13.38276 -13.30846 -13.17233 -13.06277 -13.01872 -12.80331 -12.73759 -12.65499 -12.62372 -12.43904 -12.21418 -12.08752 -11.88701 -11.55277 -11.35353 -11.26765 -11.18467 -11.17828 -10.62142 -9.94238 -9.75178 -9.54018 -8.69211 -6.48192 -0.49904 0.39176 0.81952 1.37515 1.45718 1.50627 2.12137 2.18268 2.59213 2.80135 3.34934 3.41369 3.50296 3.66632 3.70536 3.88446 4.10068 4.27945 4.38611 4.40337 4.45991 4.52623 4.55783 4.61651 4.77420 4.81366 4.82879 4.85306 4.89199 4.91936 5.04918 5.09208 5.13151 5.19880 5.21303 5.24983 5.29499 5.39498 5.42684 5.51319 5.54319 5.77108 5.86390 5.93837 6.09134 6.51699 6.79589 6.83566 7.06139 8.27874 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020545 B = 0.003059 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.524895 B = 9151.367383 C = 9475.625647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.985 5.985 3 C 0.125 3.875 4 C -0.112 4.112 5 H 0.055 0.945 6 C -0.117 4.117 7 C -0.118 4.118 8 C -0.153 4.153 9 C 0.104 3.896 10 H 0.083 0.917 11 O -0.574 6.574 12 S 2.709 3.291 13 O -0.996 6.996 14 O -0.986 6.986 15 C -0.643 4.643 16 C -0.145 4.145 17 C -0.124 4.124 18 C -0.135 4.135 19 C 0.062 3.938 20 C -0.498 4.498 21 H 0.077 0.923 22 C 0.036 3.964 23 N -0.828 5.828 24 Si 0.986 3.014 25 H -0.262 1.262 26 H -0.265 1.265 27 H -0.260 1.260 28 C -0.143 4.143 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.390 0.610 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.117 0.883 44 H 0.291 0.709 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.447 15.406 -10.476 18.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.824 5.824 3 C 0.000 4.000 4 C -0.133 4.133 5 H 0.073 0.927 6 C -0.155 4.155 7 C -0.156 4.156 8 C -0.191 4.191 9 C 0.045 3.955 10 H 0.101 0.899 11 O -0.382 6.382 12 S 2.802 3.198 13 O -0.986 6.986 14 O -0.976 6.976 15 C -0.732 4.732 16 C -0.166 4.166 17 C -0.143 4.143 18 C -0.155 4.155 19 C 0.059 3.941 20 C -0.528 4.528 21 H 0.095 0.905 22 C -0.179 4.179 23 N -0.454 5.454 24 Si 0.806 3.194 25 H -0.187 1.187 26 H -0.189 1.189 27 H -0.184 1.184 28 C -0.164 4.164 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.240 0.760 41 H 0.149 0.851 42 H 0.147 0.853 43 H 0.135 0.865 44 H 0.102 0.898 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.623 14.769 -10.768 18.289 hybrid contribution -0.840 -0.587 1.073 1.484 sum -1.463 14.182 -9.695 17.242 Atomic orbital electron populations 1.21860 0.77130 1.02832 1.04168 1.57014 1.15901 1.20064 1.89377 1.21618 0.96893 0.84728 0.96730 1.22483 0.96134 0.98523 0.96145 0.92680 1.22107 0.98652 0.93954 1.00804 1.22028 0.97046 0.98640 0.97859 1.23039 0.99032 0.98604 0.98403 1.22923 0.91676 0.86219 0.94643 0.89917 1.86587 1.36706 1.34945 1.79976 1.01161 0.72307 0.72624 0.73688 1.93472 1.69114 1.62053 1.73952 1.93461 1.38414 1.84679 1.81071 1.30413 1.04308 1.13656 1.24789 1.20477 0.97451 1.04132 0.94529 1.21176 0.99026 0.98948 0.95151 1.21716 0.93294 1.00049 1.00468 1.18056 0.92670 0.91717 0.91621 1.19844 1.17524 1.21560 0.93847 0.90518 1.26724 0.96734 0.97102 0.97305 1.69783 1.38099 1.28741 1.08777 0.85137 0.78302 0.77935 0.77978 1.18678 1.18892 1.18404 1.20883 0.98111 1.00519 0.96914 0.89287 0.93463 0.89019 0.90334 0.87419 0.89504 0.91582 0.89896 0.91394 0.89676 0.92152 0.76024 0.85137 0.85311 0.86519 0.89819 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.28 9.29 127.77 1.19 3.47 16 2 N -0.98 -30.47 3.09 -539.13 -1.67 -32.14 16 3 C 0.13 3.07 4.73 86.38 0.41 3.47 16 4 C -0.11 -2.51 2.81 -9.72 -0.03 -2.54 16 5 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 6 C -0.12 -1.92 6.38 31.32 0.20 -1.72 16 7 C -0.12 -1.51 6.80 31.32 0.21 -1.30 16 8 C -0.15 -2.12 6.56 31.73 0.21 -1.91 16 9 C 0.10 1.79 3.13 31.95 0.10 1.89 16 10 H 0.08 1.12 7.96 -2.38 -0.02 1.10 16 11 O -0.57 -11.50 10.32 -148.98 -1.54 -13.03 16 12 S 2.71 109.39 5.59 -56.49 -0.32 109.07 16 13 O -1.00 -45.65 16.52 -128.00 -2.11 -47.77 16 14 O -0.99 -41.48 16.10 -128.00 -2.06 -43.54 16 15 C -0.64 -29.47 5.97 22.22 0.13 -29.33 16 16 C -0.15 -6.39 9.53 22.46 0.21 -6.18 16 17 C -0.12 -5.63 10.02 22.22 0.22 -5.41 16 18 C -0.14 -7.01 8.67 22.73 0.20 -6.81 16 19 C 0.06 3.40 5.56 -21.29 -0.12 3.28 16 20 C -0.50 -26.82 9.07 23.46 0.21 -26.61 16 21 H 0.08 4.03 7.87 -2.91 -0.02 4.01 16 22 C 0.04 1.77 5.24 85.26 0.45 2.22 16 23 N -0.83 -41.77 10.83 21.83 0.24 -41.53 16 24 Si 0.99 37.58 29.58 68.60 2.03 39.61 16 25 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 26 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 27 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 28 C -0.14 -7.30 9.26 22.73 0.21 -7.09 16 29 H 0.09 2.22 5.45 -2.38 -0.01 2.21 16 30 H 0.05 1.46 7.92 -2.39 -0.02 1.44 16 31 H 0.09 1.87 7.92 -2.39 -0.02 1.85 16 32 H 0.08 2.01 7.53 -2.39 -0.02 1.99 16 33 H 0.11 1.97 7.81 -2.39 -0.02 1.95 16 34 H 0.09 1.15 7.84 -2.39 -0.02 1.13 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.39 4.22 9.12 -74.05 -0.68 3.55 16 41 H 0.13 5.01 7.59 -2.91 -0.02 4.99 16 42 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16 43 H 0.12 6.17 6.17 -2.91 -0.02 6.15 16 44 H 0.29 13.18 8.30 -92.71 -0.77 12.42 16 45 H 0.11 5.36 7.60 -2.91 -0.02 5.34 16 Total: -1.00 -70.30 372.35 -1.30 -71.60 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: 0.33 Total: 32.31 kcal Atomic # 6 Polarization: -78.39 SS G_CDS: 3.81 Total: -74.58 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -1.43 Total: -73.67 kcal Atomic # 8 Polarization: -98.63 SS G_CDS: -5.71 Total: -104.34 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Atomic # 16 Polarization: 109.39 SS G_CDS: -0.32 Total: 109.07 kcal Total: -70.30 -1.30 -71.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.605 kcal (2) G-P(sol) polarization free energy of solvation -70.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds