Wall clock time and date at job start Tue Mar 31 2020 23:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46498 * 119.99660 * 2 1 4 4 C 1.52996 * 109.47621 * 278.49057 * 3 2 1 5 5 H 1.09004 * 110.43226 * 304.51207 * 4 3 2 6 6 C 1.54890 * 110.48690 * 67.19043 * 4 3 2 7 7 C 1.54890 * 102.74676 * 156.62051 * 6 4 3 8 8 C 1.54270 * 104.19910 * 322.06191 * 7 6 4 9 9 C 1.53874 * 106.59511 * 23.60924 * 8 7 6 10 10 H 1.09004 * 110.02979 * 240.71942 * 9 8 7 11 11 O 1.42897 * 110.07370 * 119.30934 * 9 8 7 12 12 S 1.65597 * 120.00009 * 180.02562 * 2 1 3 13 13 O 1.42103 * 106.40409 * 27.49405 * 12 2 1 14 14 O 1.42094 * 106.40393 * 160.41460 * 12 2 1 15 15 C 1.76202 * 107.21628 * 273.95560 * 12 2 1 16 16 C 1.38653 * 119.87341 * 265.39297 * 15 12 2 17 17 C 1.38617 * 120.49972 * 179.72386 * 16 15 12 18 18 C 1.37633 * 120.24675 * 0.54628 * 17 16 15 19 19 C 1.40692 * 119.74538 * 359.73091 * 18 17 16 20 20 C 1.41393 * 120.24392 * 179.97438 * 19 18 17 21 21 H 1.08004 * 120.00196 * 156.71663 * 20 19 18 22 22 C 1.39952 * 120.00369 * 336.71397 * 20 19 18 23 23 N 1.30823 * 119.99335 * 332.08217 * 22 20 19 24 24 Si 1.86790 * 120.00151 * 152.08118 * 22 20 19 25 25 H 1.48503 * 109.47036 * 94.98792 * 24 22 20 26 26 H 1.48504 * 109.47386 * 214.98229 * 24 22 20 27 27 H 1.48501 * 109.47440 * 334.98537 * 24 22 20 28 28 C 1.37595 * 119.87657 * 85.66283 * 15 12 2 29 29 H 1.09000 * 109.47485 * 89.99414 * 1 2 3 30 30 H 1.09005 * 109.46712 * 209.99513 * 1 2 3 31 31 H 1.09006 * 109.46952 * 329.99228 * 1 2 3 32 32 H 1.09004 * 109.47023 * 38.49252 * 3 2 1 33 33 H 1.09002 * 109.46560 * 158.48988 * 3 2 1 34 34 H 1.08991 * 110.75890 * 274.94024 * 6 4 3 35 35 H 1.08997 * 110.75106 * 38.30981 * 6 4 3 36 36 H 1.08999 * 110.48272 * 203.38299 * 7 6 4 37 37 H 1.08995 * 110.59682 * 80.79655 * 7 6 4 38 38 H 1.08997 * 110.02905 * 264.32611 * 8 7 6 39 39 H 1.08993 * 110.07137 * 142.91627 * 8 7 6 40 40 H 0.96703 * 113.99909 * 62.80727 * 11 9 8 41 41 H 1.08001 * 119.75108 * 359.97438 * 16 15 12 42 42 H 1.08003 * 119.87623 * 180.27836 * 17 16 15 43 43 H 1.08008 * 120.12433 * 179.74635 * 18 17 16 44 44 H 0.97004 * 119.99212 * 179.97438 * 23 22 20 45 45 H 1.07995 * 120.12828 * 359.97438 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.2681 1.8170 -1.4266 5 1 2.7091 1.0789 -2.0966 6 6 0.8584 2.2272 -1.9201 7 6 1.1721 3.2635 -3.0277 8 6 2.3810 4.0493 -2.4792 9 6 3.0778 3.1296 -1.4612 10 1 3.0767 3.5950 -0.4755 11 8 4.4196 2.8662 -1.8762 12 16 2.2931 -1.4341 -0.0006 13 8 1.4465 -2.3860 -0.6304 14 8 3.6059 -1.1393 -0.4574 15 6 2.4533 -1.9446 1.6782 16 6 3.5993 -1.6258 2.3906 17 6 3.7365 -2.0159 3.7136 18 6 2.7388 -2.7350 4.3315 19 6 1.5740 -3.0691 3.6166 20 6 0.5427 -3.8080 4.2408 21 1 -0.4677 -3.7496 3.8638 22 6 0.8311 -4.6152 5.3471 23 7 2.0254 -5.1305 5.4871 24 14 -0.4891 -4.9565 6.6237 25 1 -1.1624 -6.2419 6.3079 26 1 0.1336 -5.0415 7.9693 27 1 -1.4879 -3.8577 6.6090 28 6 1.4431 -2.6628 2.2756 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 1.6825 1.9856 0.6397 33 1 3.2072 1.1053 0.3768 34 1 0.3287 1.3688 -2.3330 35 1 0.2851 2.6850 -1.1140 36 1 0.3220 3.9285 -3.1797 37 1 1.4341 2.7617 -3.9591 38 1 2.0417 4.9610 -1.9876 39 1 3.0663 4.2955 -3.2902 40 1 4.9801 3.6532 -1.9180 41 1 4.3893 -1.0658 1.9123 42 1 4.6316 -1.7582 4.2604 43 1 2.8496 -3.0415 5.3612 44 1 2.2253 -5.6897 6.2541 45 1 0.5530 -2.9134 1.7177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619493467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:02 Heat of formation + Delta-G solvation = -118.004307 kcal Electronic energy + Delta-G solvation = -27894.951868 eV Core-core repulsion = 24003.385151 eV Total energy + Delta-G solvation = -3891.566716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.30120 -37.61575 -36.65295 -36.24121 -35.22637 -34.72136 -33.86528 -30.27307 -30.09477 -29.78436 -27.92914 -26.46784 -25.46414 -23.55927 -21.84787 -21.03026 -20.95083 -20.13184 -18.68528 -17.82397 -17.35790 -16.92849 -16.06323 -15.96157 -15.61782 -15.30547 -15.13272 -14.69457 -14.25963 -13.72199 -13.57452 -13.44174 -13.36413 -13.30548 -12.73067 -12.63611 -12.59777 -12.34663 -11.92717 -11.75615 -11.54853 -11.46888 -11.42106 -11.30594 -11.27803 -11.18657 -11.09534 -10.86626 -10.83516 -10.63502 -10.61449 -10.54529 -10.05669 -9.81589 -9.63035 -9.24371 -8.77385 -8.04188 -7.73749 -7.01921 -4.50751 1.01153 2.21085 2.64110 2.98288 2.99668 3.09142 3.48066 3.80946 4.07255 4.26936 4.33379 4.41042 4.45715 4.74107 4.90638 4.93258 5.15328 5.15786 5.25795 5.37432 5.39689 5.41407 5.49892 5.62423 5.67283 5.72564 5.78108 5.86545 5.90034 5.98232 6.03572 6.04787 6.19185 6.25380 6.28693 6.64238 6.69244 6.74869 6.93225 7.02796 7.22446 7.40474 7.58022 7.72049 7.78031 7.93107 8.37816 8.64428 8.71888 9.95735 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021531 B = 0.002924 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.115934 B = 9574.099163 C = 9955.255037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -1.001 6.001 3 C 0.134 3.866 4 C -0.105 4.105 5 H 0.092 0.908 6 C -0.118 4.118 7 C -0.123 4.123 8 C -0.157 4.157 9 C 0.105 3.895 10 H 0.061 0.939 11 O -0.559 6.559 12 S 2.684 3.316 13 O -0.969 6.969 14 O -0.967 6.967 15 C -0.627 4.627 16 C -0.154 4.154 17 C -0.115 4.115 18 C -0.129 4.129 19 C 0.096 3.904 20 C -0.467 4.467 21 H 0.084 0.916 22 C 0.083 3.917 23 N -0.778 5.778 24 Si 0.904 3.096 25 H -0.268 1.268 26 H -0.274 1.274 27 H -0.258 1.258 28 C -0.130 4.130 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.373 0.627 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.285 0.715 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 16.378 -8.410 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.837 5.837 3 C 0.008 3.992 4 C -0.125 4.125 5 H 0.110 0.890 6 C -0.156 4.156 7 C -0.161 4.161 8 C -0.195 4.195 9 C 0.045 3.955 10 H 0.079 0.921 11 O -0.364 6.364 12 S 2.780 3.220 13 O -0.959 6.959 14 O -0.957 6.957 15 C -0.719 4.719 16 C -0.175 4.175 17 C -0.135 4.135 18 C -0.148 4.148 19 C 0.093 3.907 20 C -0.495 4.495 21 H 0.102 0.898 22 C -0.138 4.138 23 N -0.401 5.401 24 Si 0.727 3.273 25 H -0.193 1.193 26 H -0.199 1.199 27 H -0.181 1.181 28 C -0.152 4.152 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.220 0.780 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.132 0.868 44 H 0.096 0.904 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.856 15.178 -9.063 17.775 hybrid contribution -0.348 0.341 1.514 1.590 sum -2.204 15.519 -7.549 17.398 Atomic orbital electron populations 1.21516 0.78622 1.03247 1.01685 1.57494 1.14990 1.21134 1.90064 1.21285 0.97275 0.85165 0.95443 1.22459 0.94983 0.96656 0.98433 0.88971 1.22620 0.96091 0.98793 0.98090 1.22308 0.97299 0.97719 0.98743 1.22900 0.98503 0.98670 0.99390 1.22447 0.82160 0.94938 0.95958 0.92148 1.86655 1.21804 1.37157 1.90804 1.01981 0.72734 0.72032 0.75235 1.93526 1.68184 1.59404 1.74809 1.93524 1.37508 1.84088 1.80613 1.29849 1.03728 1.15240 1.23036 1.20063 0.96263 1.05942 0.95274 1.20767 0.98207 0.99757 0.94732 1.21409 0.95007 0.98843 0.99585 1.17621 0.92512 0.90451 0.90147 1.19549 0.96126 1.22871 1.10987 0.89755 1.25948 0.96300 0.93372 0.98206 1.69873 1.22258 1.21145 1.26839 0.86377 0.81556 0.79768 0.79609 1.19342 1.19873 1.18120 1.20677 0.97355 1.02085 0.95047 0.92636 0.90826 0.91224 0.90566 0.89259 0.90694 0.90997 0.91663 0.91484 0.91454 0.91017 0.77997 0.87502 0.88420 0.86821 0.90410 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.18 9.16 59.85 0.55 1.73 16 2 N -1.00 -15.03 3.18 -121.75 -0.39 -15.41 16 3 C 0.13 1.73 4.85 -4.04 -0.02 1.71 16 4 C -0.11 -1.26 2.84 -88.96 -0.25 -1.51 16 5 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 6 C -0.12 -1.12 5.05 -24.74 -0.12 -1.25 16 7 C -0.12 -1.02 6.83 -25.07 -0.17 -1.19 16 8 C -0.16 -1.24 6.61 -25.61 -0.17 -1.41 16 9 C 0.10 1.04 3.83 -25.61 -0.10 0.94 16 10 H 0.06 0.52 7.84 -51.93 -0.41 0.11 16 11 O -0.56 -6.33 13.22 -35.23 -0.47 -6.80 16 12 S 2.68 52.89 5.60 -107.50 -0.60 52.29 16 13 O -0.97 -21.20 16.60 -57.17 -0.95 -22.15 16 14 O -0.97 -20.66 15.93 -57.17 -0.91 -21.57 16 15 C -0.63 -14.07 5.96 -39.66 -0.24 -14.30 16 16 C -0.15 -3.45 9.53 -39.29 -0.37 -3.83 16 17 C -0.12 -2.63 10.02 -39.66 -0.40 -3.03 16 18 C -0.13 -3.22 8.75 -38.88 -0.34 -3.56 16 19 C 0.10 2.49 5.56 -106.83 -0.59 1.90 16 20 C -0.47 -11.95 8.99 -37.74 -0.34 -12.29 16 21 H 0.08 2.05 7.98 -52.48 -0.42 1.64 16 22 C 0.08 1.99 4.89 -17.34 -0.08 1.91 16 23 N -0.78 -19.45 11.55 55.55 0.64 -18.81 16 24 Si 0.90 17.76 29.64 -169.99 -5.04 12.72 16 25 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 26 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 27 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 28 C -0.13 -3.16 9.26 -38.87 -0.36 -3.52 16 29 H 0.06 0.61 6.80 -51.93 -0.35 0.26 16 30 H 0.07 0.99 7.89 -51.93 -0.41 0.58 16 31 H 0.07 0.68 7.98 -51.93 -0.41 0.26 16 32 H 0.08 0.78 7.96 -51.93 -0.41 0.37 16 33 H 0.09 1.27 7.37 -51.93 -0.38 0.89 16 34 H 0.07 0.74 6.87 -51.93 -0.36 0.38 16 35 H 0.07 0.59 8.01 -51.93 -0.42 0.17 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.54 7.96 -51.93 -0.41 0.13 16 40 H 0.37 2.42 9.11 45.56 0.42 2.83 16 41 H 0.11 2.19 7.50 -52.49 -0.39 1.79 16 42 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 43 H 0.11 2.86 6.46 -52.48 -0.34 2.52 16 44 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 45 H 0.11 2.50 7.71 -52.49 -0.40 2.10 16 LS Contribution 375.45 15.07 5.66 5.66 Total: -1.00 -32.25 375.45 -11.02 -43.27 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.95 Total: 8.49 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: -3.01 Total: -37.68 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.26 Total: -34.22 kcal Atomic # 8 Polarization: -48.20 SS G_CDS: -2.33 Total: -50.52 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.04 Total: 12.72 kcal Atomic # 16 Polarization: 52.89 SS G_CDS: -0.60 Total: 52.29 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.25 -11.02 -43.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.734 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds