Wall clock time and date at job start Tue Mar 31 2020 23:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46498 * 119.99660 * 2 1 4 4 C 1.52996 * 109.47621 * 278.49057 * 3 2 1 5 5 H 1.09004 * 110.43226 * 304.51207 * 4 3 2 6 6 C 1.54890 * 110.48690 * 67.19043 * 4 3 2 7 7 C 1.54890 * 102.74676 * 156.62051 * 6 4 3 8 8 C 1.54270 * 104.19910 * 322.06191 * 7 6 4 9 9 C 1.53874 * 106.59511 * 23.60924 * 8 7 6 10 10 H 1.09004 * 110.02979 * 240.71942 * 9 8 7 11 11 O 1.42897 * 110.07370 * 119.30934 * 9 8 7 12 12 S 1.65597 * 120.00009 * 180.02562 * 2 1 3 13 13 O 1.42103 * 106.40409 * 27.49405 * 12 2 1 14 14 O 1.42094 * 106.40393 * 160.41460 * 12 2 1 15 15 C 1.76202 * 107.21628 * 273.95560 * 12 2 1 16 16 C 1.38653 * 119.87341 * 265.39297 * 15 12 2 17 17 C 1.38617 * 120.49972 * 179.72386 * 16 15 12 18 18 C 1.37633 * 120.24675 * 0.54628 * 17 16 15 19 19 C 1.40692 * 119.74538 * 359.73091 * 18 17 16 20 20 C 1.41393 * 120.24392 * 179.97438 * 19 18 17 21 21 H 1.08004 * 120.00196 * 156.71663 * 20 19 18 22 22 C 1.39952 * 120.00369 * 336.71397 * 20 19 18 23 23 N 1.30823 * 119.99335 * 332.08217 * 22 20 19 24 24 Si 1.86790 * 120.00151 * 152.08118 * 22 20 19 25 25 H 1.48503 * 109.47036 * 94.98792 * 24 22 20 26 26 H 1.48504 * 109.47386 * 214.98229 * 24 22 20 27 27 H 1.48501 * 109.47440 * 334.98537 * 24 22 20 28 28 C 1.37595 * 119.87657 * 85.66283 * 15 12 2 29 29 H 1.09000 * 109.47485 * 89.99414 * 1 2 3 30 30 H 1.09005 * 109.46712 * 209.99513 * 1 2 3 31 31 H 1.09006 * 109.46952 * 329.99228 * 1 2 3 32 32 H 1.09004 * 109.47023 * 38.49252 * 3 2 1 33 33 H 1.09002 * 109.46560 * 158.48988 * 3 2 1 34 34 H 1.08991 * 110.75890 * 274.94024 * 6 4 3 35 35 H 1.08997 * 110.75106 * 38.30981 * 6 4 3 36 36 H 1.08999 * 110.48272 * 203.38299 * 7 6 4 37 37 H 1.08995 * 110.59682 * 80.79655 * 7 6 4 38 38 H 1.08997 * 110.02905 * 264.32611 * 8 7 6 39 39 H 1.08993 * 110.07137 * 142.91627 * 8 7 6 40 40 H 0.96703 * 113.99909 * 62.80727 * 11 9 8 41 41 H 1.08001 * 119.75108 * 359.97438 * 16 15 12 42 42 H 1.08003 * 119.87623 * 180.27836 * 17 16 15 43 43 H 1.08008 * 120.12433 * 179.74635 * 18 17 16 44 44 H 0.97004 * 119.99212 * 179.97438 * 23 22 20 45 45 H 1.07995 * 120.12828 * 359.97438 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.2681 1.8170 -1.4266 5 1 2.7091 1.0789 -2.0966 6 6 0.8584 2.2272 -1.9201 7 6 1.1721 3.2635 -3.0277 8 6 2.3810 4.0493 -2.4792 9 6 3.0778 3.1296 -1.4612 10 1 3.0767 3.5950 -0.4755 11 8 4.4196 2.8662 -1.8762 12 16 2.2931 -1.4341 -0.0006 13 8 1.4465 -2.3860 -0.6304 14 8 3.6059 -1.1393 -0.4574 15 6 2.4533 -1.9446 1.6782 16 6 3.5993 -1.6258 2.3906 17 6 3.7365 -2.0159 3.7136 18 6 2.7388 -2.7350 4.3315 19 6 1.5740 -3.0691 3.6166 20 6 0.5427 -3.8080 4.2408 21 1 -0.4677 -3.7496 3.8638 22 6 0.8311 -4.6152 5.3471 23 7 2.0254 -5.1305 5.4871 24 14 -0.4891 -4.9565 6.6237 25 1 -1.1624 -6.2419 6.3079 26 1 0.1336 -5.0415 7.9693 27 1 -1.4879 -3.8577 6.6090 28 6 1.4431 -2.6628 2.2756 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 1.6825 1.9856 0.6397 33 1 3.2072 1.1053 0.3768 34 1 0.3287 1.3688 -2.3330 35 1 0.2851 2.6850 -1.1140 36 1 0.3220 3.9285 -3.1797 37 1 1.4341 2.7617 -3.9591 38 1 2.0417 4.9610 -1.9876 39 1 3.0663 4.2955 -3.2902 40 1 4.9801 3.6532 -1.9180 41 1 4.3893 -1.0658 1.9123 42 1 4.6316 -1.7582 4.2604 43 1 2.8496 -3.0415 5.3612 44 1 2.2253 -5.6897 6.2541 45 1 0.5530 -2.9134 1.7177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619493467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:01 Heat of formation + Delta-G solvation = -140.514930 kcal Electronic energy + Delta-G solvation = -27895.928001 eV Core-core repulsion = 24003.385151 eV Total energy + Delta-G solvation = -3892.542850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.10250 -39.45222 -38.32311 -37.27229 -36.90223 -35.70680 -35.56141 -31.96498 -31.65814 -31.11671 -28.64854 -27.45986 -27.30400 -24.62567 -23.64511 -22.80782 -21.70549 -20.95669 -20.32133 -19.37899 -18.48973 -18.14650 -17.78753 -17.13997 -16.93650 -16.61350 -16.33251 -16.24963 -15.59324 -15.17490 -15.11517 -14.65172 -14.52392 -14.35210 -14.13233 -13.77135 -13.72409 -13.50661 -13.33526 -13.27998 -13.13322 -13.03869 -13.00194 -12.93500 -12.67267 -12.56811 -12.31185 -12.19720 -11.94413 -11.65694 -11.61312 -11.51243 -11.36605 -11.25262 -11.05596 -10.77605 -10.01879 -9.85540 -9.62060 -8.83400 -6.43471 -0.55273 0.38171 0.83481 1.36600 1.43470 1.54215 2.05308 2.16747 2.50721 2.74605 3.33245 3.41428 3.47497 3.65012 3.68565 3.84413 4.07344 4.27009 4.35481 4.39937 4.42613 4.49386 4.55174 4.63785 4.69328 4.76242 4.80696 4.84378 4.87328 4.91657 4.96908 5.04755 5.05536 5.12069 5.17049 5.21761 5.31050 5.35902 5.38644 5.48272 5.55589 5.69790 5.85386 5.89031 6.07574 6.48744 6.75813 6.82962 7.01903 8.17508 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021531 B = 0.002924 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.115934 B = 9574.099163 C = 9955.255037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.990 5.990 3 C 0.127 3.873 4 C -0.111 4.111 5 H 0.054 0.946 6 C -0.116 4.116 7 C -0.124 4.124 8 C -0.150 4.150 9 C 0.101 3.899 10 H 0.078 0.922 11 O -0.589 6.589 12 S 2.705 3.295 13 O -0.994 6.994 14 O -0.985 6.985 15 C -0.633 4.633 16 C -0.161 4.161 17 C -0.116 4.116 18 C -0.152 4.152 19 C 0.069 3.931 20 C -0.502 4.502 21 H 0.084 0.916 22 C 0.044 3.956 23 N -0.811 5.811 24 Si 0.980 3.020 25 H -0.262 1.262 26 H -0.263 1.263 27 H -0.254 1.254 28 C -0.149 4.149 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.392 0.608 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.105 0.895 44 H 0.295 0.705 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.180 18.715 -8.099 20.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.829 5.829 3 C 0.002 3.998 4 C -0.132 4.132 5 H 0.073 0.927 6 C -0.153 4.153 7 C -0.161 4.161 8 C -0.187 4.187 9 C 0.042 3.958 10 H 0.096 0.904 11 O -0.397 6.397 12 S 2.799 3.201 13 O -0.984 6.984 14 O -0.976 6.976 15 C -0.722 4.722 16 C -0.181 4.181 17 C -0.135 4.135 18 C -0.171 4.171 19 C 0.066 3.934 20 C -0.530 4.530 21 H 0.103 0.897 22 C -0.174 4.174 23 N -0.435 5.435 24 Si 0.800 3.200 25 H -0.187 1.187 26 H -0.188 1.188 27 H -0.178 1.178 28 C -0.170 4.170 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.130 0.870 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.242 0.758 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.123 0.877 44 H 0.105 0.895 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.963 17.515 -8.739 19.797 hybrid contribution 0.073 -0.311 1.306 1.344 sum -2.890 17.203 -7.433 18.962 Atomic orbital electron populations 1.21834 0.76688 1.04358 1.03208 1.57162 1.16073 1.20168 1.89536 1.21577 0.96696 0.84516 0.96989 1.22464 0.97024 0.96894 0.96787 0.92698 1.22641 0.94573 0.99031 0.99085 1.22326 0.98258 0.97708 0.97816 1.22856 0.98043 0.98844 0.99004 1.22554 0.81556 0.94106 0.97583 0.90366 1.86603 1.22921 1.39152 1.91030 1.01275 0.72323 0.72663 0.73843 1.93484 1.68631 1.61488 1.74819 1.93491 1.39072 1.84619 1.80392 1.30327 1.03080 1.14175 1.24586 1.20390 0.96685 1.05762 0.95298 1.21091 0.98585 0.98644 0.95158 1.21430 0.95848 1.00405 0.99464 1.17991 0.93244 0.91141 0.91064 1.19837 0.96216 1.24155 1.12781 0.89745 1.26828 0.98638 0.92461 0.99510 1.69897 1.24194 1.21634 1.27796 0.85231 0.78375 0.79647 0.76767 1.18679 1.18773 1.17765 1.20775 0.98226 1.03156 0.94866 0.90984 0.92286 0.87572 0.86974 0.90919 0.91418 0.88793 0.89705 0.92703 0.89219 0.90907 0.75825 0.85609 0.85562 0.87728 0.89452 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.93 9.16 127.77 1.17 3.10 16 2 N -0.99 -28.71 3.18 -539.10 -1.71 -30.42 16 3 C 0.13 3.06 4.85 86.38 0.42 3.48 16 4 C -0.11 -2.50 2.84 -9.72 -0.03 -2.53 16 5 H 0.05 1.64 8.08 -2.38 -0.02 1.62 16 6 C -0.12 -1.90 5.05 31.89 0.16 -1.74 16 7 C -0.12 -1.73 6.83 31.67 0.22 -1.52 16 8 C -0.15 -1.93 6.61 31.32 0.21 -1.72 16 9 C 0.10 1.80 3.83 31.32 0.12 1.92 16 10 H 0.08 1.10 7.84 -2.38 -0.02 1.08 16 11 O -0.59 -12.74 13.22 -148.98 -1.97 -14.71 16 12 S 2.71 107.52 5.60 -56.49 -0.32 107.20 16 13 O -0.99 -44.30 16.60 -128.00 -2.12 -46.42 16 14 O -0.99 -42.55 15.93 -128.00 -2.04 -44.58 16 15 C -0.63 -28.80 5.96 22.22 0.13 -28.67 16 16 C -0.16 -7.18 9.53 22.46 0.21 -6.97 16 17 C -0.12 -5.29 10.02 22.22 0.22 -5.07 16 18 C -0.15 -7.79 8.75 22.73 0.20 -7.59 16 19 C 0.07 3.69 5.56 -21.29 -0.12 3.57 16 20 C -0.50 -26.43 8.99 23.46 0.21 -26.22 16 21 H 0.08 4.26 7.98 -2.91 -0.02 4.23 16 22 C 0.04 2.13 4.89 85.26 0.42 2.55 16 23 N -0.81 -41.28 11.55 21.83 0.25 -41.03 16 24 Si 0.98 36.37 29.64 68.60 2.03 38.41 16 25 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 26 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 27 H -0.25 -9.20 7.11 99.48 0.71 -8.50 16 28 C -0.15 -7.46 9.26 22.73 0.21 -7.25 16 29 H 0.07 1.45 6.80 -2.39 -0.02 1.43 16 30 H 0.06 1.56 7.89 -2.38 -0.02 1.54 16 31 H 0.11 1.69 7.98 -2.38 -0.02 1.67 16 32 H 0.11 1.90 7.96 -2.39 -0.02 1.88 16 33 H 0.07 2.00 7.37 -2.39 -0.02 1.98 16 34 H 0.07 1.20 6.87 -2.39 -0.02 1.18 16 35 H 0.09 1.13 8.01 -2.39 -0.02 1.11 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 0.93 7.96 -2.39 -0.02 0.91 16 40 H 0.39 4.54 9.11 -74.06 -0.67 3.87 16 41 H 0.13 5.07 7.50 -2.91 -0.02 5.05 16 42 H 0.13 4.90 8.06 -2.91 -0.02 4.87 16 43 H 0.10 5.44 6.46 -2.91 -0.02 5.42 16 44 H 0.29 13.35 8.30 -92.71 -0.77 12.59 16 45 H 0.11 5.28 7.71 -2.91 -0.02 5.26 16 Total: -1.00 -71.96 375.45 -1.80 -73.75 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 0.33 Total: 32.45 kcal Atomic # 6 Polarization: -78.40 SS G_CDS: 3.75 Total: -74.65 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: -1.46 Total: -71.45 kcal Atomic # 8 Polarization: -99.58 SS G_CDS: -6.13 Total: -105.72 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.41 kcal Atomic # 16 Polarization: 107.52 SS G_CDS: -0.32 Total: 107.20 kcal Total: -71.96 -1.80 -73.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.760 kcal (2) G-P(sol) polarization free energy of solvation -71.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds