Wall clock time and date at job start Tue Mar 31 2020 23:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46504 * 119.99418 * 2 1 4 4 C 1.53001 * 109.47389 * 66.56383 * 3 2 1 5 5 O 1.42894 * 110.01873 * 56.98710 * 4 3 2 6 6 C 1.54259 * 110.02790 * 295.59784 * 4 3 2 7 7 C 1.54968 * 104.16141 * 217.13755 * 6 4 3 8 8 C 1.54882 * 102.77472 * 37.88854 * 7 6 4 9 9 C 1.53870 * 110.03089 * 178.38290 * 4 3 2 10 10 S 1.65596 * 120.00166 * 179.97438 * 2 1 3 11 11 O 1.42094 * 106.40393 * 18.77772 * 10 2 1 12 12 O 1.42103 * 106.40267 * 151.70125 * 10 2 1 13 13 C 1.76202 * 107.21731 * 265.23989 * 10 2 1 14 14 C 1.38661 * 119.87413 * 269.72934 * 13 10 2 15 15 C 1.38616 * 120.49841 * 179.72250 * 14 13 10 16 16 C 1.37640 * 120.24632 * 0.55129 * 15 14 13 17 17 C 1.40692 * 119.74761 * 359.72684 * 16 15 14 18 18 C 1.41399 * 120.24509 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99981 * 206.52473 * 18 17 16 20 20 C 1.39942 * 119.99727 * 26.52513 * 18 17 16 21 21 N 1.30821 * 120.00190 * 13.16317 * 20 18 17 22 22 Si 1.86806 * 119.99711 * 193.16800 * 20 18 17 23 23 H 1.48499 * 109.46939 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47132 * 119.99567 * 22 20 18 25 25 H 1.48495 * 109.46933 * 239.99772 * 22 20 18 26 26 C 1.37593 * 119.87748 * 90.00330 * 13 10 2 27 27 H 1.08990 * 109.46967 * 272.16704 * 1 2 3 28 28 H 1.08998 * 109.47067 * 32.16677 * 1 2 3 29 29 H 1.08997 * 109.46826 * 152.16325 * 1 2 3 30 30 H 1.09012 * 109.46720 * 186.55911 * 3 2 1 31 31 H 1.08999 * 109.47553 * 306.55486 * 3 2 1 32 32 H 0.96696 * 114.00320 * 300.70931 * 5 4 3 33 33 H 1.09005 * 110.49320 * 335.78759 * 6 4 3 34 34 H 1.09004 * 110.48702 * 98.43212 * 6 4 3 35 35 H 1.08994 * 110.71719 * 279.57372 * 7 6 4 36 36 H 1.09002 * 110.76372 * 156.22447 * 7 6 4 37 37 H 1.08996 * 110.48961 * 203.40389 * 8 7 6 38 38 H 1.09000 * 110.48591 * 80.76417 * 8 7 6 39 39 H 1.08994 * 110.03292 * 238.56324 * 9 4 3 40 40 H 1.09005 * 110.03677 * 359.97438 * 9 4 3 41 41 H 1.07997 * 119.74799 * 359.97438 * 14 13 10 42 42 H 1.07996 * 119.87200 * 180.25020 * 15 14 13 43 43 H 1.07997 * 120.12405 * 179.74601 * 16 15 14 44 44 H 0.97002 * 119.99457 * 180.02562 * 21 20 18 45 45 H 1.08003 * 120.12771 * 359.97313 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 1.9555 1.9974 1.3235 5 8 2.3441 1.1652 2.4181 6 6 0.4664 2.3787 1.4522 7 6 0.4884 3.7652 2.1441 8 6 1.7186 4.4503 1.4991 9 6 2.7517 3.3138 1.3536 10 16 2.2931 -1.4341 0.0006 11 8 1.3761 -2.4271 -0.4377 12 8 3.5332 -1.1817 -0.6457 13 6 2.6748 -1.8152 1.6781 14 6 3.8647 -1.3702 2.2339 15 6 4.1754 -1.6576 3.5538 16 6 3.3089 -2.3991 4.3244 17 6 2.1014 -2.8607 3.7693 18 6 1.2032 -3.6227 4.5517 19 1 0.5293 -4.3194 4.0754 20 6 1.1877 -3.4742 5.9431 21 7 1.8052 -2.4643 6.5001 22 14 0.2851 -4.7180 7.0051 23 1 -0.3271 -5.7570 6.1386 24 1 1.2435 -5.3565 7.9426 25 1 -0.7791 -4.0289 7.7783 26 6 1.7937 -2.5579 2.4298 27 1 -0.3633 0.0389 1.0268 28 1 -0.3633 0.8699 -0.5471 29 1 -0.3633 -0.9087 -0.4799 30 1 3.2634 1.0730 -0.1174 31 1 1.8490 1.8895 -0.8255 32 1 1.8695 0.3237 2.4603 33 1 0.0046 2.4513 0.4674 34 1 -0.0616 1.6518 2.0695 35 1 0.6263 3.6571 3.2199 36 1 -0.4229 4.3213 1.9243 37 1 2.1037 5.2347 2.1506 38 1 1.4596 4.8577 0.5218 39 1 3.4337 3.3183 2.2037 40 1 3.3107 3.4335 0.4255 41 1 4.5526 -0.7919 1.6350 42 1 5.1032 -1.3026 3.9776 43 1 3.5549 -2.6253 5.3514 44 1 1.7947 -2.3616 7.4646 45 1 0.8693 -2.9069 1.9938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619494304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:33 Heat of formation + Delta-G solvation = -129.693228 kcal Electronic energy + Delta-G solvation = -29224.986833 eV Core-core repulsion = 25332.913247 eV Total energy + Delta-G solvation = -3892.073586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.51305 -39.43495 -38.35080 -36.96825 -36.55681 -35.73147 -35.46855 -31.87006 -31.56745 -30.59568 -29.43531 -27.68274 -27.29337 -24.58558 -23.55199 -22.77478 -21.76822 -20.70153 -20.25614 -19.48206 -18.55837 -17.92086 -17.76434 -17.13559 -16.73327 -16.70079 -16.37111 -16.26446 -15.48102 -15.12790 -15.04832 -14.62929 -14.51259 -14.29380 -14.00775 -13.72579 -13.56026 -13.50183 -13.37972 -13.31594 -13.09017 -13.02253 -12.78541 -12.71321 -12.63319 -12.56701 -12.27470 -12.20107 -11.93828 -11.82432 -11.59844 -11.50052 -11.37458 -11.26300 -11.15738 -10.88182 -9.96456 -9.75541 -9.47693 -8.66370 -6.43067 -0.56282 0.42237 0.88112 1.38198 1.45343 1.52384 2.01656 2.19004 2.60037 2.74319 3.30434 3.35692 3.53841 3.65967 3.74184 3.90258 3.96646 4.31198 4.32408 4.38405 4.46209 4.53018 4.59753 4.70164 4.74789 4.81731 4.86179 4.87824 4.93437 4.96151 5.01152 5.06361 5.07708 5.10550 5.19596 5.23352 5.26196 5.40139 5.43118 5.52582 5.58703 5.64809 5.93512 5.97970 6.12694 6.56178 6.80450 6.84584 6.88070 8.30101 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011892 B = 0.004544 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.878306 B = 6160.839619 C = 7143.786088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.994 5.994 3 C 0.092 3.908 4 C 0.099 3.901 5 O -0.569 6.569 6 C -0.149 4.149 7 C -0.124 4.124 8 C -0.114 4.114 9 C -0.114 4.114 10 S 2.708 3.292 11 O -0.989 6.989 12 O -0.986 6.986 13 C -0.645 4.645 14 C -0.116 4.116 15 C -0.123 4.123 16 C -0.129 4.129 17 C 0.064 3.936 18 C -0.497 4.497 19 H 0.077 0.923 20 C 0.037 3.963 21 N -0.828 5.828 22 Si 0.981 3.019 23 H -0.260 1.260 24 H -0.265 1.265 25 H -0.266 1.266 26 C -0.137 4.137 27 H 0.058 0.942 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.371 0.629 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.289 0.711 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.541 12.771 -8.648 15.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.833 5.833 3 C -0.033 4.033 4 C 0.057 3.943 5 O -0.376 6.376 6 C -0.187 4.187 7 C -0.161 4.161 8 C -0.152 4.152 9 C -0.152 4.152 10 S 2.802 3.198 11 O -0.979 6.979 12 O -0.976 6.976 13 C -0.734 4.734 14 C -0.136 4.136 15 C -0.143 4.143 16 C -0.149 4.149 17 C 0.061 3.939 18 C -0.527 4.527 19 H 0.095 0.905 20 C -0.178 4.178 21 N -0.454 5.454 22 Si 0.802 3.198 23 H -0.183 1.183 24 H -0.190 1.190 25 H -0.190 1.190 26 C -0.159 4.159 27 H 0.076 0.924 28 H 0.132 0.868 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.139 0.861 32 H 0.220 0.780 33 H 0.120 0.880 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.112 0.888 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.130 0.870 44 H 0.099 0.901 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.914 12.897 -9.078 16.039 hybrid contribution -0.482 -1.201 1.702 2.138 sum -3.396 11.696 -7.376 14.239 Atomic orbital electron populations 1.22034 0.76819 1.05364 1.03149 1.57213 1.16105 1.20395 1.89603 1.22440 0.97318 0.84434 0.99135 1.22570 0.95022 0.90976 0.85718 1.86600 1.67444 1.33403 1.50202 1.23281 0.95366 0.97734 1.02280 1.22486 0.99091 0.95568 0.99002 1.22337 0.94371 0.96611 1.01861 1.22174 0.98347 0.91492 1.03178 1.01193 0.72298 0.72504 0.73852 1.93480 1.64755 1.58526 1.81150 1.93479 1.44815 1.85262 1.74080 1.30216 1.04721 1.14229 1.24276 1.20255 0.95646 1.02367 0.95376 1.21046 0.99340 0.99496 0.94375 1.21666 0.93519 0.99868 0.99833 1.17970 0.92259 0.91701 0.91968 1.19844 1.18900 1.21601 0.92332 0.90456 1.26675 0.95245 0.96414 0.99433 1.69814 1.35936 1.26214 1.13450 0.85163 0.78437 0.78408 0.77781 1.18319 1.19009 1.19040 1.20822 0.98395 1.01185 0.95452 0.92351 0.86836 0.90388 0.89379 0.86147 0.77972 0.88037 0.92339 0.93567 0.89857 0.91186 0.89210 0.92148 0.88849 0.86138 0.86462 0.87030 0.90067 0.87066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.53 8.93 127.77 1.14 2.67 16 2 N -0.99 -26.70 2.62 -539.11 -1.41 -28.11 16 3 C 0.09 2.10 4.77 86.38 0.41 2.52 16 4 C 0.10 2.42 1.12 -10.07 -0.01 2.41 16 5 O -0.57 -19.62 11.91 -148.98 -1.78 -21.40 16 6 C -0.15 -3.02 4.37 31.69 0.14 -2.88 16 7 C -0.12 -2.31 6.91 31.91 0.22 -2.09 16 8 C -0.11 -1.82 6.83 31.67 0.22 -1.60 16 9 C -0.11 -2.33 6.27 31.32 0.20 -2.13 16 10 S 2.71 98.44 5.68 -56.49 -0.32 98.11 16 11 O -0.99 -40.12 15.77 -128.00 -2.02 -42.13 16 12 O -0.99 -38.73 15.92 -128.00 -2.04 -40.76 16 13 C -0.65 -27.38 4.18 22.22 0.09 -27.28 16 14 C -0.12 -4.94 8.21 22.46 0.18 -4.75 16 15 C -0.12 -5.59 10.02 22.22 0.22 -5.36 16 16 C -0.13 -6.57 8.68 22.73 0.20 -6.37 16 17 C 0.06 3.35 5.57 -21.29 -0.12 3.23 16 18 C -0.50 -26.07 9.07 23.46 0.21 -25.86 16 19 H 0.08 3.95 7.88 -2.91 -0.02 3.93 16 20 C 0.04 1.80 5.22 85.26 0.45 2.24 16 21 N -0.83 -41.89 10.82 21.83 0.24 -41.65 16 22 Si 0.98 37.49 29.58 68.60 2.03 39.52 16 23 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 24 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 25 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 26 C -0.14 -6.52 9.26 22.73 0.21 -6.31 16 27 H 0.06 1.29 6.62 -2.39 -0.02 1.28 16 28 H 0.11 1.56 6.78 -2.39 -0.02 1.54 16 29 H 0.08 1.82 6.95 -2.39 -0.02 1.80 16 30 H 0.09 2.25 6.95 -2.38 -0.02 2.24 16 31 H 0.12 1.84 8.09 -2.39 -0.02 1.82 16 32 H 0.37 13.90 6.08 -74.06 -0.45 13.45 16 33 H 0.10 1.46 6.20 -2.38 -0.01 1.45 16 34 H 0.06 1.39 6.82 -2.38 -0.02 1.38 16 35 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 1.50 7.95 -2.39 -0.02 1.48 16 40 H 0.09 1.50 7.67 -2.38 -0.02 1.48 16 41 H 0.12 4.72 7.59 -2.91 -0.02 4.70 16 42 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 43 H 0.11 5.92 6.14 -2.91 -0.02 5.90 16 44 H 0.29 13.23 8.30 -92.71 -0.77 12.46 16 45 H 0.11 5.11 7.60 -2.91 -0.02 5.08 16 Total: -1.00 -65.26 361.27 -0.97 -66.23 By element: Atomic # 1 Polarization: 41.21 SS G_CDS: 0.56 Total: 41.77 kcal Atomic # 6 Polarization: -75.34 SS G_CDS: 3.76 Total: -71.58 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: -1.18 Total: -69.76 kcal Atomic # 8 Polarization: -98.47 SS G_CDS: -5.83 Total: -104.30 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.52 kcal Atomic # 16 Polarization: 98.44 SS G_CDS: -0.32 Total: 98.11 kcal Total: -65.26 -0.97 -66.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619494304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.462 kcal (2) G-P(sol) polarization free energy of solvation -65.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds