Wall clock time and date at job start Tue Mar 31 2020 22:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46851 * 2 1 4 4 N 1.46493 * 109.47232 * 119.99856 * 2 1 3 5 5 S 1.65602 * 120.00335 * 265.00024 * 4 2 1 6 6 O 1.42099 * 106.40675 * 178.54361 * 5 4 2 7 7 O 1.42105 * 106.40092 * 311.46085 * 5 4 2 8 8 C 1.76203 * 107.21840 * 64.99710 * 5 4 2 9 9 C 1.38655 * 119.87254 * 90.00532 * 8 5 4 10 10 C 1.38604 * 120.50189 * 179.97438 * 9 8 5 11 11 C 1.37647 * 120.24738 * 0.02562 * 10 9 8 12 12 C 1.40690 * 119.74244 * 359.97438 * 11 10 9 13 13 C 1.41401 * 120.24102 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99585 * 155.22994 * 13 12 11 15 15 C 1.39946 * 120.00221 * 335.23544 * 13 12 11 16 16 N 1.30828 * 119.99650 * 342.28311 * 15 13 12 17 17 Si 1.86798 * 120.00061 * 162.28474 * 15 13 12 18 18 H 1.48499 * 109.47214 * 89.99939 * 17 15 13 19 19 H 1.48503 * 109.47043 * 209.99661 * 17 15 13 20 20 H 1.48499 * 109.47036 * 330.00046 * 17 15 13 21 21 C 1.37589 * 119.87729 * 269.72694 * 8 5 4 22 22 C 1.52997 * 109.46927 * 240.00174 * 2 1 3 23 23 H 1.09001 * 109.48135 * 64.99556 * 22 2 1 24 24 C 1.53091 * 109.47980 * 185.02114 * 22 2 1 25 25 C 1.53186 * 109.16331 * 177.57708 * 24 22 2 26 26 C 1.53172 * 109.04447 * 303.04047 * 25 24 22 27 27 C 1.53086 * 109.16800 * 56.96959 * 26 25 24 28 28 O 1.42904 * 109.41981 * 302.39480 * 27 26 25 29 29 H 1.08999 * 109.47404 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46895 * 299.99689 * 1 2 3 31 31 H 1.09003 * 109.47599 * 59.99627 * 1 2 3 32 32 H 0.97003 * 120.00205 * 85.00076 * 4 2 1 33 33 H 1.08006 * 119.74854 * 359.97438 * 9 8 5 34 34 H 1.08000 * 119.87875 * 179.97438 * 10 9 8 35 35 H 1.08007 * 120.12459 * 180.02562 * 11 10 9 36 36 H 0.96994 * 119.99358 * 180.02562 * 16 15 13 37 37 H 1.08007 * 120.13211 * 0.02562 * 21 8 5 38 38 H 1.08996 * 109.52551 * 297.49533 * 24 22 2 39 39 H 1.09001 * 109.52323 * 57.68290 * 24 22 2 40 40 H 1.08994 * 109.54301 * 183.16607 * 25 24 22 41 41 H 1.09005 * 109.53043 * 62.90033 * 25 24 22 42 42 H 1.09009 * 109.52344 * 297.06359 * 26 25 24 43 43 H 1.08998 * 109.52674 * 176.88088 * 26 25 24 44 44 H 1.09000 * 109.48453 * 182.40902 * 27 26 25 45 45 H 1.09001 * 109.47909 * 62.37473 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1961 5 16 2.4122 0.1772 2.5505 6 8 2.8125 -0.7697 3.5315 7 8 3.2437 1.2444 2.1155 8 6 0.9275 0.9148 3.1474 9 6 0.1382 0.2352 4.0626 10 6 -1.0320 0.8033 4.5411 11 6 -1.4234 2.0509 4.1111 12 6 -0.6303 2.7498 3.1827 13 6 -1.0226 4.0319 2.7335 14 1 -0.2810 4.7251 2.3649 15 6 -2.3717 4.4024 2.7665 16 7 -3.2992 3.4860 2.8739 17 14 -2.8481 6.2053 2.6573 18 1 -3.0362 6.5822 1.2333 19 1 -4.1146 6.4285 3.3998 20 1 -1.7721 7.0385 3.2518 21 6 0.5588 2.1655 2.7081 22 6 2.0399 -0.7212 -1.2493 23 1 1.7516 -0.1584 -2.1371 24 6 3.5656 -0.8317 -1.1879 25 6 4.0632 -1.6076 -2.4115 26 6 3.3816 -2.9789 -2.4448 27 6 1.8631 -2.7853 -2.4576 28 8 1.4706 -2.0306 -1.3093 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 2.1110 -1.6561 1.1949 33 1 0.4374 -0.7445 4.4051 34 1 -1.6394 0.2648 5.2534 35 1 -2.3354 2.4920 4.4857 36 1 -4.2343 3.7429 2.8965 37 1 1.1772 2.6950 1.9983 38 1 4.0034 0.1665 -1.1867 39 1 3.8564 -1.3590 -0.2794 40 1 5.1432 -1.7386 -2.3456 41 1 3.8161 -1.0555 -3.3183 42 1 3.6686 -3.5499 -1.5616 43 1 3.6879 -3.5163 -3.3422 44 1 1.3724 -3.7584 -2.4381 45 1 1.5726 -2.2496 -3.3613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619495362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:18 Heat of formation + Delta-G solvation = -121.373494 kcal Electronic energy + Delta-G solvation = -28383.863891 eV Core-core repulsion = 24492.151075 eV Total energy + Delta-G solvation = -3891.712815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.72381 -37.65025 -36.67467 -35.81405 -35.26285 -33.83475 -33.74088 -30.93187 -30.07006 -29.84316 -29.10945 -25.46825 -25.36014 -23.64549 -21.86111 -21.28339 -20.93316 -20.31517 -19.11722 -17.98433 -17.17943 -16.61001 -16.11229 -15.87584 -15.30219 -15.07850 -14.77303 -14.70003 -14.62536 -14.18735 -13.89099 -13.45667 -13.34637 -13.17163 -12.75607 -12.62533 -12.54374 -12.00058 -11.81994 -11.66421 -11.55773 -11.48869 -11.37905 -11.34100 -11.32116 -11.17558 -11.11879 -10.98194 -10.88426 -10.63504 -10.56822 -10.31824 -9.77921 -9.65268 -9.49497 -9.33639 -9.07010 -8.00253 -7.68443 -6.92076 -4.52538 1.08410 2.21853 2.64591 3.00296 3.02206 3.09259 3.55350 3.73014 3.83211 4.28088 4.45238 4.54127 4.65275 4.72261 4.82042 4.99154 5.04538 5.14016 5.32020 5.39901 5.41100 5.45639 5.53840 5.65279 5.69073 5.76196 5.84312 5.90214 5.98568 6.07460 6.18459 6.21018 6.25452 6.46407 6.66401 6.76764 6.77831 6.87534 7.04645 7.16504 7.22340 7.35829 7.40628 7.74793 7.81781 7.95326 8.41201 8.68102 8.72974 10.03374 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014444 B = 0.003577 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.087579 B = 7825.993903 C = 8660.890258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.163 3.837 3 H 0.103 0.897 4 N -1.110 6.110 5 S 2.687 3.313 6 O -0.978 6.978 7 O -0.974 6.974 8 C -0.629 4.629 9 C -0.143 4.143 10 C -0.121 4.121 11 C -0.117 4.117 12 C 0.093 3.907 13 C -0.461 4.461 14 H 0.082 0.918 15 C 0.076 3.924 16 N -0.794 5.794 17 Si 0.909 3.091 18 H -0.268 1.268 19 H -0.276 1.276 20 H -0.259 1.259 21 C -0.126 4.126 22 C 0.090 3.910 23 H 0.069 0.931 24 C -0.154 4.154 25 C -0.122 4.122 26 C -0.157 4.157 27 C 0.061 3.939 28 O -0.370 6.370 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.416 0.584 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.283 0.717 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.328 -8.544 -10.375 14.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.055 3.945 3 H 0.120 0.880 4 N -0.868 5.868 5 S 2.782 3.218 6 O -0.969 6.969 7 O -0.964 6.964 8 C -0.721 4.721 9 C -0.164 4.164 10 C -0.141 4.141 11 C -0.137 4.137 12 C 0.090 3.910 13 C -0.490 4.490 14 H 0.100 0.900 15 C -0.142 4.142 16 N -0.419 5.419 17 Si 0.733 3.267 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.148 4.148 22 C 0.030 3.970 23 H 0.087 0.913 24 C -0.192 4.192 25 C -0.160 4.160 26 C -0.195 4.195 27 C -0.016 4.016 28 O -0.289 6.289 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.251 0.749 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.141 0.859 36 H 0.094 0.906 37 H 0.128 0.872 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.109 0.891 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.799 -8.377 -9.896 14.640 hybrid contribution -0.979 0.553 -0.302 1.164 sum 5.820 -7.824 -10.198 14.110 Atomic orbital electron populations 1.22292 0.94007 1.03277 1.03575 1.20818 0.95288 0.95529 0.82850 0.87964 1.55536 1.83969 1.19685 1.27632 1.01689 0.74827 0.73080 0.72168 1.93517 1.82263 1.62612 1.58464 1.93522 1.65327 1.55797 1.81739 1.29726 1.21749 1.07349 1.13306 1.20068 0.96262 0.99247 1.00872 1.20806 0.96248 0.96610 1.00395 1.21628 1.00868 0.94490 0.96703 1.17651 0.90564 0.92860 0.89944 1.19593 0.92885 0.98985 1.37576 0.89984 1.25913 0.96349 0.99720 0.92210 1.69781 1.01974 1.35005 1.35141 0.86291 0.78784 0.82343 0.79278 1.19359 1.20046 1.18324 1.20736 0.99514 0.93090 1.01430 1.22365 0.92310 0.84493 0.97788 0.91314 1.22229 0.96007 1.01854 0.99066 1.21599 1.00305 0.95780 0.98314 1.22204 0.96697 0.97908 1.02701 1.22535 0.94053 0.96254 0.88720 1.87953 1.69932 1.26708 1.44339 0.91436 0.90250 0.92045 0.74945 0.87669 0.88464 0.85861 0.90627 0.87161 0.90301 0.90560 0.91545 0.91929 0.91016 0.91230 0.89054 0.93394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 9.32 37.16 0.35 -2.28 16 2 C 0.16 2.29 2.82 -67.94 -0.19 2.10 16 3 H 0.10 1.47 7.50 -51.93 -0.39 1.08 16 4 N -1.11 -16.60 4.50 -4.90 -0.02 -16.63 16 5 S 2.69 50.43 5.72 -107.50 -0.61 49.82 16 6 O -0.98 -20.22 17.27 -57.17 -0.99 -21.21 16 7 O -0.97 -20.04 16.60 -57.17 -0.95 -20.99 16 8 C -0.63 -13.52 5.05 -39.66 -0.20 -13.72 16 9 C -0.14 -3.11 9.53 -39.29 -0.37 -3.49 16 10 C -0.12 -2.71 10.02 -39.66 -0.40 -3.11 16 11 C -0.12 -2.87 8.69 -38.87 -0.34 -3.21 16 12 C 0.09 2.35 5.57 -106.83 -0.60 1.75 16 13 C -0.46 -11.56 9.05 -37.74 -0.34 -11.90 16 14 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 15 C 0.08 1.80 5.14 -17.34 -0.09 1.72 16 16 N -0.79 -19.28 10.97 55.55 0.61 -18.67 16 17 Si 0.91 17.80 29.59 -169.99 -5.03 12.77 16 18 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 19 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 20 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 21 C -0.13 -2.93 8.34 -38.88 -0.32 -3.25 16 22 C 0.09 1.05 2.49 -26.69 -0.07 0.98 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 C -0.15 -1.68 5.24 -26.59 -0.14 -1.82 16 25 C -0.12 -1.07 6.03 -26.55 -0.16 -1.23 16 26 C -0.16 -1.28 6.14 -26.60 -0.16 -1.45 16 27 C 0.06 0.55 6.84 37.20 0.25 0.81 16 28 O -0.37 -4.38 9.24 -35.23 -0.33 -4.71 16 29 H 0.07 1.00 7.56 -51.93 -0.39 0.61 16 30 H 0.08 1.45 6.18 -51.92 -0.32 1.13 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.42 5.55 8.45 -34.47 -0.29 5.26 16 33 H 0.11 2.10 7.60 -52.48 -0.40 1.70 16 34 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.12 3.09 6.18 -52.48 -0.32 2.76 16 36 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 37 H 0.11 2.44 7.60 -52.48 -0.40 2.04 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 0.89 7.31 -51.93 -0.38 0.51 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 371.39 15.07 5.60 5.60 Total: -1.00 -29.38 371.39 -11.18 -40.56 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -6.67 Total: 11.56 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: -2.78 Total: -38.10 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.59 Total: -35.29 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -2.26 Total: -46.91 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 16 Polarization: 50.43 SS G_CDS: -0.61 Total: 49.82 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.38 -11.18 -40.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619495362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.814 kcal (2) G-P(sol) polarization free energy of solvation -29.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds