Wall clock time and date at job start Tue Mar 31 2020 22:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46882 * 2 1 4 4 N 1.46500 * 109.47003 * 240.00369 * 2 1 3 5 5 S 1.65596 * 120.00184 * 94.99990 * 4 2 1 6 6 O 1.42102 * 106.40008 * 178.53838 * 5 4 2 7 7 O 1.42101 * 106.40081 * 311.45614 * 5 4 2 8 8 C 1.76199 * 107.22015 * 64.99788 * 5 4 2 9 9 C 1.38656 * 119.87776 * 89.99862 * 8 5 4 10 10 C 1.38608 * 120.50201 * 179.97438 * 9 8 5 11 11 C 1.37631 * 120.25132 * 0.02664 * 10 9 8 12 12 C 1.40704 * 119.74276 * 359.97438 * 11 10 9 13 13 C 1.41400 * 120.24492 * 180.02562 * 12 11 10 14 14 H 1.07995 * 119.99833 * 204.39556 * 13 12 11 15 15 C 1.39947 * 120.00025 * 24.39628 * 13 12 11 16 16 N 1.30829 * 119.99978 * 17.85642 * 15 13 12 17 17 Si 1.86796 * 120.00062 * 197.85897 * 15 13 12 18 18 H 1.48501 * 109.47171 * 59.99976 * 17 15 13 19 19 H 1.48505 * 109.47223 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47326 * 300.00008 * 17 15 13 21 21 C 1.37602 * 119.87430 * 269.72535 * 8 5 4 22 22 C 1.52995 * 109.47431 * 120.00047 * 2 1 3 23 23 H 1.08997 * 109.49214 * 174.97688 * 22 2 1 24 24 C 1.53100 * 109.47772 * 295.00174 * 22 2 1 25 25 C 1.53179 * 109.21142 * 177.62134 * 24 22 2 26 26 C 1.53175 * 109.03910 * 302.99005 * 25 24 22 27 27 C 1.53088 * 109.16384 * 56.98008 * 26 25 24 28 28 O 1.42904 * 109.41576 * 302.39340 * 27 26 25 29 29 H 1.08997 * 109.47276 * 59.99917 * 1 2 3 30 30 H 1.08998 * 109.46993 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47199 * 299.99809 * 1 2 3 32 32 H 0.97000 * 119.99701 * 274.99534 * 4 2 1 33 33 H 1.07999 * 119.74561 * 0.02562 * 9 8 5 34 34 H 1.08004 * 119.87481 * 180.02562 * 10 9 8 35 35 H 1.08004 * 120.13262 * 179.97438 * 11 10 9 36 36 H 0.96990 * 119.99940 * 180.02562 * 16 15 13 37 37 H 1.07998 * 120.12604 * 359.97438 * 21 8 5 38 38 H 1.09000 * 109.52227 * 57.68535 * 24 22 2 39 39 H 1.08995 * 109.52156 * 297.55420 * 24 22 2 40 40 H 1.09006 * 109.54374 * 62.85371 * 25 24 22 41 41 H 1.09003 * 109.54350 * 183.11521 * 25 24 22 42 42 H 1.09002 * 109.52296 * 176.89348 * 26 25 24 43 43 H 1.09007 * 109.51790 * 297.07121 * 26 25 24 44 44 H 1.08995 * 109.47945 * 62.37922 * 27 26 25 45 45 H 1.09009 * 109.48040 * 182.41390 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 16 2.4121 0.1773 -2.5505 6 8 2.8775 -0.7634 -3.5085 7 8 1.3245 1.0593 -2.7922 8 6 3.7926 1.1911 -2.1372 9 6 5.0808 0.7118 -2.3197 10 6 6.1762 1.4984 -1.9994 11 6 5.9956 2.7663 -1.4952 12 6 4.6930 3.2632 -1.3058 13 6 4.4952 4.5644 -0.7889 14 1 3.5739 4.8095 -0.2815 15 6 5.4932 5.5345 -0.9351 16 7 6.4377 5.3723 -1.8257 17 14 5.4768 7.0609 0.1416 18 1 5.5713 6.6611 1.5686 19 1 6.6328 7.9253 -0.2074 20 1 4.2136 7.8095 -0.0801 21 6 3.5883 2.4577 -1.6398 22 6 2.0400 -0.7212 1.2492 23 1 3.1263 -0.8000 1.2056 24 6 1.6351 0.0693 2.4962 25 6 2.0967 -0.6881 3.7450 26 6 1.4916 -2.0951 3.7283 27 6 1.9019 -2.8033 2.4346 28 8 1.4693 -2.0312 1.3126 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 2.1109 -1.6561 -1.1949 33 1 5.2319 -0.2818 -2.7152 34 1 7.1752 1.1150 -2.1461 35 1 6.8505 3.3774 -1.2459 36 1 7.1295 6.0445 -1.9267 37 1 2.5842 2.8309 -1.5029 38 1 0.5513 0.1833 2.5192 39 1 2.1044 1.0527 2.4723 40 1 3.1845 -0.7590 3.7472 41 1 1.7629 -0.1580 4.6371 42 1 1.8590 -2.6599 4.5852 43 1 0.4048 -2.0248 3.7763 44 1 2.9863 -2.9094 2.4065 45 1 1.4389 -3.7895 2.3974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619495363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:22 Heat of formation + Delta-G solvation = -122.356212 kcal Electronic energy + Delta-G solvation = -28294.142706 eV Core-core repulsion = 24402.387277 eV Total energy + Delta-G solvation = -3891.755429 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.72789 -37.66078 -36.68197 -35.84657 -35.23729 -33.86108 -33.73503 -31.34082 -30.09669 -29.81119 -28.76896 -25.50216 -25.39795 -23.95348 -21.90538 -21.50172 -20.97249 -20.08545 -19.07500 -17.91105 -17.15636 -16.45613 -16.13704 -15.92617 -15.58202 -15.27567 -14.74900 -14.72375 -14.64604 -14.45341 -13.54942 -13.43951 -13.40415 -13.12694 -12.90689 -12.74652 -12.58963 -12.06312 -11.94255 -11.67926 -11.56564 -11.50315 -11.39895 -11.34684 -11.30626 -11.25799 -11.06626 -10.95601 -10.86989 -10.63618 -10.61483 -10.46527 -9.80159 -9.68857 -9.50841 -9.35967 -9.11814 -8.05231 -7.72251 -6.93905 -4.55516 1.06127 2.18748 2.61961 2.97996 2.99764 3.05974 3.55128 3.67132 3.80945 4.26962 4.44206 4.57206 4.67144 4.72212 4.83145 4.98107 5.03807 5.09001 5.29213 5.32284 5.37493 5.42286 5.54521 5.59749 5.69837 5.72390 5.80060 5.87615 5.95410 6.03209 6.04948 6.13520 6.17864 6.37150 6.49915 6.63410 6.74114 6.84604 7.02187 7.14676 7.19297 7.31910 7.37346 7.71282 7.77866 7.92249 8.37745 8.65112 8.69731 10.01700 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010545 B = 0.004125 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.717706 B = 6786.832841 C = 8220.100942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.163 3.837 3 H 0.101 0.899 4 N -1.113 6.113 5 S 2.686 3.314 6 O -0.977 6.977 7 O -0.969 6.969 8 C -0.632 4.632 9 C -0.145 4.145 10 C -0.121 4.121 11 C -0.117 4.117 12 C 0.092 3.908 13 C -0.461 4.461 14 H 0.082 0.918 15 C 0.076 3.924 16 N -0.793 5.793 17 Si 0.911 3.089 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.263 1.263 21 C -0.131 4.131 22 C 0.086 3.914 23 H 0.069 0.931 24 C -0.154 4.154 25 C -0.122 4.122 26 C -0.156 4.156 27 C 0.061 3.939 28 O -0.374 6.374 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.416 0.584 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.284 0.716 37 H 0.112 0.888 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.049 0.951 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.001 -10.310 10.790 16.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.056 3.944 3 H 0.119 0.881 4 N -0.870 5.870 5 S 2.782 3.218 6 O -0.967 6.967 7 O -0.959 6.959 8 C -0.724 4.724 9 C -0.166 4.166 10 C -0.141 4.141 11 C -0.137 4.137 12 C 0.089 3.911 13 C -0.491 4.491 14 H 0.100 0.900 15 C -0.143 4.143 16 N -0.418 5.418 17 Si 0.735 3.265 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.188 1.188 21 C -0.152 4.152 22 C 0.027 3.973 23 H 0.087 0.913 24 C -0.192 4.192 25 C -0.159 4.159 26 C -0.194 4.194 27 C -0.016 4.016 28 O -0.293 6.293 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.250 0.750 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.142 0.858 36 H 0.095 0.905 37 H 0.130 0.870 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.409 -10.112 9.711 15.415 hybrid contribution 1.041 0.751 1.088 1.683 sum -5.367 -9.361 10.799 15.266 Atomic orbital electron populations 1.22272 0.94608 1.03072 1.02728 1.20755 0.95164 0.95641 0.82846 0.88097 1.55614 1.82228 1.19312 1.29876 1.01771 0.74400 0.73290 0.72346 1.93518 1.82532 1.62732 1.57960 1.93531 1.52689 1.66204 1.83497 1.29790 1.13957 1.10050 1.18567 1.20090 0.91149 0.99371 1.05988 1.20817 0.96778 0.95372 1.01125 1.21651 0.98167 0.93719 1.00175 1.17669 0.90968 0.92738 0.89733 1.19564 1.02409 0.94536 1.32553 0.89969 1.25933 0.94227 1.00233 0.93892 1.69774 1.11384 1.34902 1.25759 0.86306 0.78904 0.80240 0.81002 1.18729 1.20239 1.18781 1.20754 0.98652 0.93154 1.02669 1.22419 0.97484 0.83230 0.94166 0.91305 1.22270 1.02781 0.99856 0.94322 1.21575 1.00737 0.95536 0.98088 1.22189 1.01794 0.96922 0.98453 1.22539 0.98980 0.94544 0.85551 1.87926 1.69653 1.25960 1.45724 0.91117 0.91424 0.91742 0.74976 0.87615 0.88407 0.85765 0.90477 0.87021 0.90383 0.90090 0.91729 0.91433 0.91211 0.91122 0.93277 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 9.08 37.15 0.34 -1.80 16 2 C 0.16 2.25 2.65 -67.94 -0.18 2.07 16 3 H 0.10 1.47 7.24 -51.92 -0.38 1.09 16 4 N -1.11 -16.56 5.46 -4.89 -0.03 -16.59 16 5 S 2.69 50.98 5.65 -107.50 -0.61 50.38 16 6 O -0.98 -20.46 17.27 -57.17 -0.99 -21.45 16 7 O -0.97 -20.40 16.52 -57.17 -0.94 -21.35 16 8 C -0.63 -13.65 5.81 -39.66 -0.23 -13.88 16 9 C -0.14 -3.14 9.53 -39.29 -0.37 -3.52 16 10 C -0.12 -2.71 10.02 -39.67 -0.40 -3.10 16 11 C -0.12 -2.87 8.70 -38.87 -0.34 -3.21 16 12 C 0.09 2.33 5.58 -106.82 -0.60 1.73 16 13 C -0.46 -11.52 9.05 -37.74 -0.34 -11.86 16 14 H 0.08 1.94 7.91 -52.49 -0.42 1.53 16 15 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 16 N -0.79 -19.56 10.95 55.55 0.61 -18.95 16 17 Si 0.91 17.69 29.60 -169.99 -5.03 12.66 16 18 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 19 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 20 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 21 C -0.13 -3.05 8.65 -38.87 -0.34 -3.39 16 22 C 0.09 1.03 2.53 -26.68 -0.07 0.96 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 24 C -0.15 -1.60 5.22 -26.59 -0.14 -1.73 16 25 C -0.12 -1.08 6.03 -26.55 -0.16 -1.24 16 26 C -0.16 -1.25 6.14 -26.60 -0.16 -1.42 16 27 C 0.06 0.55 6.84 37.20 0.25 0.80 16 28 O -0.37 -4.32 9.25 -35.23 -0.33 -4.64 16 29 H 0.07 1.00 7.64 -51.93 -0.40 0.60 16 30 H 0.07 0.83 7.56 -51.93 -0.39 0.44 16 31 H 0.06 0.70 6.52 -51.93 -0.34 0.36 16 32 H 0.42 5.46 8.59 -34.47 -0.30 5.16 16 33 H 0.11 2.10 7.60 -52.49 -0.40 1.70 16 34 H 0.10 1.91 8.06 -52.48 -0.42 1.48 16 35 H 0.12 3.09 6.16 -52.48 -0.32 2.77 16 36 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 37 H 0.11 2.48 7.60 -52.49 -0.40 2.08 16 38 H 0.08 0.77 6.47 -51.93 -0.34 0.43 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -29.94 371.74 -11.14 -41.08 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -6.61 Total: 11.14 kcal Atomic # 6 Polarization: -35.07 SS G_CDS: -2.82 Total: -37.89 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.58 Total: -35.54 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -2.26 Total: -47.44 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Atomic # 16 Polarization: 50.98 SS G_CDS: -0.61 Total: 50.38 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.94 -11.14 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619495363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.272 kcal (2) G-P(sol) polarization free energy of solvation -29.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds