Wall clock time and date at job start Tue Mar 31 2020 22:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46882 * 2 1 4 4 N 1.46500 * 109.47003 * 240.00369 * 2 1 3 5 5 S 1.65596 * 120.00184 * 94.99990 * 4 2 1 6 6 O 1.42102 * 106.40008 * 178.53838 * 5 4 2 7 7 O 1.42101 * 106.40081 * 311.45614 * 5 4 2 8 8 C 1.76199 * 107.22015 * 64.99788 * 5 4 2 9 9 C 1.38656 * 119.87776 * 89.99862 * 8 5 4 10 10 C 1.38608 * 120.50201 * 179.97438 * 9 8 5 11 11 C 1.37631 * 120.25132 * 0.02664 * 10 9 8 12 12 C 1.40704 * 119.74276 * 359.97438 * 11 10 9 13 13 C 1.41400 * 120.24492 * 180.02562 * 12 11 10 14 14 H 1.07995 * 119.99833 * 204.39556 * 13 12 11 15 15 C 1.39947 * 120.00025 * 24.39628 * 13 12 11 16 16 N 1.30829 * 119.99978 * 17.85642 * 15 13 12 17 17 Si 1.86796 * 120.00062 * 197.85897 * 15 13 12 18 18 H 1.48501 * 109.47171 * 59.99976 * 17 15 13 19 19 H 1.48505 * 109.47223 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47326 * 300.00008 * 17 15 13 21 21 C 1.37602 * 119.87430 * 269.72535 * 8 5 4 22 22 C 1.52995 * 109.47431 * 120.00047 * 2 1 3 23 23 H 1.08997 * 109.49214 * 174.97688 * 22 2 1 24 24 C 1.53100 * 109.47772 * 295.00174 * 22 2 1 25 25 C 1.53179 * 109.21142 * 177.62134 * 24 22 2 26 26 C 1.53175 * 109.03910 * 302.99005 * 25 24 22 27 27 C 1.53088 * 109.16384 * 56.98008 * 26 25 24 28 28 O 1.42904 * 109.41576 * 302.39340 * 27 26 25 29 29 H 1.08997 * 109.47276 * 59.99917 * 1 2 3 30 30 H 1.08998 * 109.46993 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47199 * 299.99809 * 1 2 3 32 32 H 0.97000 * 119.99701 * 274.99534 * 4 2 1 33 33 H 1.07999 * 119.74561 * 0.02562 * 9 8 5 34 34 H 1.08004 * 119.87481 * 180.02562 * 10 9 8 35 35 H 1.08004 * 120.13262 * 179.97438 * 11 10 9 36 36 H 0.96990 * 119.99940 * 180.02562 * 16 15 13 37 37 H 1.07998 * 120.12604 * 359.97438 * 21 8 5 38 38 H 1.09000 * 109.52227 * 57.68535 * 24 22 2 39 39 H 1.08995 * 109.52156 * 297.55420 * 24 22 2 40 40 H 1.09006 * 109.54374 * 62.85371 * 25 24 22 41 41 H 1.09003 * 109.54350 * 183.11521 * 25 24 22 42 42 H 1.09002 * 109.52296 * 176.89348 * 26 25 24 43 43 H 1.09007 * 109.51790 * 297.07121 * 26 25 24 44 44 H 1.08995 * 109.47945 * 62.37922 * 27 26 25 45 45 H 1.09009 * 109.48040 * 182.41390 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 16 2.4121 0.1773 -2.5505 6 8 2.8775 -0.7634 -3.5085 7 8 1.3245 1.0593 -2.7922 8 6 3.7926 1.1911 -2.1372 9 6 5.0808 0.7118 -2.3197 10 6 6.1762 1.4984 -1.9994 11 6 5.9956 2.7663 -1.4952 12 6 4.6930 3.2632 -1.3058 13 6 4.4952 4.5644 -0.7889 14 1 3.5739 4.8095 -0.2815 15 6 5.4932 5.5345 -0.9351 16 7 6.4377 5.3723 -1.8257 17 14 5.4768 7.0609 0.1416 18 1 5.5713 6.6611 1.5686 19 1 6.6328 7.9253 -0.2074 20 1 4.2136 7.8095 -0.0801 21 6 3.5883 2.4577 -1.6398 22 6 2.0400 -0.7212 1.2492 23 1 3.1263 -0.8000 1.2056 24 6 1.6351 0.0693 2.4962 25 6 2.0967 -0.6881 3.7450 26 6 1.4916 -2.0951 3.7283 27 6 1.9019 -2.8033 2.4346 28 8 1.4693 -2.0312 1.3126 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 2.1109 -1.6561 -1.1949 33 1 5.2319 -0.2818 -2.7152 34 1 7.1752 1.1150 -2.1461 35 1 6.8505 3.3774 -1.2459 36 1 7.1295 6.0445 -1.9267 37 1 2.5842 2.8309 -1.5029 38 1 0.5513 0.1833 2.5192 39 1 2.1044 1.0527 2.4723 40 1 3.1845 -0.7590 3.7472 41 1 1.7629 -0.1580 4.6371 42 1 1.8590 -2.6599 4.5852 43 1 0.4048 -2.0248 3.7763 44 1 2.9863 -2.9094 2.4065 45 1 1.4389 -3.7895 2.3974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619495363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:21 Heat of formation + Delta-G solvation = -141.290691 kcal Electronic energy + Delta-G solvation = -28294.963766 eV Core-core repulsion = 24402.387277 eV Total energy + Delta-G solvation = -3892.576490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.59622 -39.45000 -38.28621 -36.99293 -36.86934 -35.66163 -34.50816 -32.33441 -31.91543 -31.59730 -29.76065 -27.33642 -26.27248 -24.75189 -23.66911 -22.87038 -22.36788 -20.95990 -20.58741 -19.56183 -18.61557 -17.72602 -17.59817 -17.02771 -16.93672 -16.60187 -16.44183 -16.06639 -15.46113 -15.42740 -15.22167 -15.08310 -14.40205 -14.35013 -14.22822 -13.88323 -13.68590 -13.55387 -13.28155 -13.22691 -13.09873 -13.03685 -13.01753 -12.86102 -12.69814 -12.56243 -12.27636 -12.20750 -12.04990 -11.82289 -11.64531 -11.55134 -11.35938 -11.18720 -11.12284 -10.45714 -10.30284 -9.85255 -9.56034 -8.72241 -6.44119 -0.49907 0.40314 0.84658 1.38611 1.47855 1.51187 2.11523 2.18714 2.55552 2.71705 2.88391 3.45350 3.54321 3.66854 3.87300 3.98397 4.03192 4.14540 4.20417 4.30567 4.35346 4.42724 4.44983 4.55494 4.67395 4.76006 4.84426 4.88868 4.90409 4.95835 5.00421 5.06666 5.10335 5.15401 5.20071 5.21853 5.29829 5.40998 5.41342 5.50324 5.56623 5.89070 5.94049 6.09344 6.14815 6.32201 6.53008 6.80771 6.85133 8.25715 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010545 B = 0.004125 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.717706 B = 6786.832841 C = 8220.100942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.154 3.846 3 H 0.089 0.911 4 N -1.096 6.096 5 S 2.715 3.285 6 O -0.993 6.993 7 O -0.989 6.989 8 C -0.637 4.637 9 C -0.150 4.150 10 C -0.123 4.123 11 C -0.140 4.140 12 C 0.065 3.935 13 C -0.495 4.495 14 H 0.084 0.916 15 C 0.037 3.963 16 N -0.825 5.825 17 Si 0.983 3.017 18 H -0.256 1.256 19 H -0.269 1.269 20 H -0.260 1.260 21 C -0.144 4.144 22 C 0.092 3.908 23 H 0.060 0.940 24 C -0.154 4.154 25 C -0.122 4.122 26 C -0.151 4.151 27 C 0.053 3.947 28 O -0.385 6.385 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.427 0.573 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.291 0.709 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.050 0.950 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.543 -11.185 12.327 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.047 3.953 3 H 0.107 0.893 4 N -0.858 5.858 5 S 2.808 3.192 6 O -0.983 6.983 7 O -0.979 6.979 8 C -0.726 4.726 9 C -0.171 4.171 10 C -0.142 4.142 11 C -0.160 4.160 12 C 0.062 3.938 13 C -0.524 4.524 14 H 0.102 0.898 15 C -0.179 4.179 16 N -0.450 5.450 17 Si 0.803 3.197 18 H -0.180 1.180 19 H -0.193 1.193 20 H -0.184 1.184 21 C -0.165 4.165 22 C 0.033 3.967 23 H 0.078 0.922 24 C -0.193 4.193 25 C -0.160 4.160 26 C -0.188 4.188 27 C -0.024 4.024 28 O -0.304 6.304 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.264 0.736 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.131 0.869 36 H 0.102 0.898 37 H 0.132 0.868 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.068 0.932 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.927 -10.998 11.246 17.188 hybrid contribution 1.172 0.881 0.594 1.581 sum -5.755 -10.117 11.840 16.603 Atomic orbital electron populations 1.22238 0.93565 1.03555 1.02902 1.20959 0.96028 0.95318 0.83003 0.89298 1.55240 1.81571 1.19621 1.29332 1.00919 0.73223 0.72549 0.72544 1.93488 1.82693 1.62775 1.59361 1.93505 1.52914 1.67212 1.84233 1.30220 1.15363 1.09940 1.17111 1.20436 0.91035 1.00217 1.05382 1.21125 0.98450 0.94608 1.00029 1.21653 0.97671 0.94752 1.01912 1.18021 0.91850 0.93516 0.90404 1.19856 1.03417 0.95271 1.33841 0.89795 1.26778 0.93377 1.03102 0.94624 1.69824 1.12074 1.36283 1.26861 0.85228 0.79087 0.76219 0.79117 1.18025 1.19326 1.18437 1.20839 0.98394 0.93905 1.03341 1.22253 0.96821 0.83867 0.93783 0.92236 1.22277 1.03181 0.99498 0.94323 1.21595 1.00595 0.96146 0.97619 1.22161 1.01842 0.96302 0.98530 1.22770 0.99306 0.95038 0.85250 1.87898 1.69757 1.25663 1.47075 0.92766 0.90715 0.89781 0.73582 0.85461 0.85732 0.86887 0.89783 0.86836 0.89683 0.90805 0.92112 0.90307 0.89437 0.90947 0.93215 0.87408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 9.08 71.98 0.65 -3.33 16 2 C 0.15 4.13 2.65 44.99 0.12 4.25 16 3 H 0.09 2.62 7.24 -2.38 -0.02 2.60 16 4 N -1.10 -31.67 5.46 -169.39 -0.93 -32.60 16 5 S 2.71 101.84 5.65 -56.49 -0.32 101.52 16 6 O -0.99 -40.54 17.27 -128.00 -2.21 -42.75 16 7 O -0.99 -41.60 16.52 -128.00 -2.11 -43.71 16 8 C -0.64 -27.63 5.81 22.22 0.13 -27.50 16 9 C -0.15 -6.43 9.53 22.46 0.21 -6.22 16 10 C -0.12 -5.47 10.02 22.21 0.22 -5.25 16 11 C -0.14 -7.03 8.70 22.73 0.20 -6.83 16 12 C 0.07 3.39 5.58 -21.29 -0.12 3.27 16 13 C -0.49 -25.42 9.05 23.46 0.21 -25.20 16 14 H 0.08 4.10 7.91 -2.91 -0.02 4.07 16 15 C 0.04 1.77 5.14 85.26 0.44 2.20 16 16 N -0.82 -41.46 10.95 21.83 0.24 -41.22 16 17 Si 0.98 36.27 29.60 68.60 2.03 38.30 16 18 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 19 H -0.27 -9.44 7.11 99.48 0.71 -8.74 16 20 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 21 C -0.14 -6.87 8.65 22.73 0.20 -6.68 16 22 C 0.09 2.11 2.53 30.63 0.08 2.18 16 23 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 24 C -0.15 -3.01 5.22 30.69 0.16 -2.85 16 25 C -0.12 -1.94 6.03 30.71 0.19 -1.75 16 26 C -0.15 -2.03 6.14 30.68 0.19 -1.84 16 27 C 0.05 0.83 6.84 72.01 0.49 1.32 16 28 O -0.38 -8.17 9.25 -148.98 -1.38 -9.54 16 29 H 0.05 1.50 7.64 -2.39 -0.02 1.48 16 30 H 0.07 1.71 7.56 -2.39 -0.02 1.69 16 31 H 0.08 1.69 6.52 -2.38 -0.02 1.68 16 32 H 0.43 10.59 8.59 -96.75 -0.83 9.76 16 33 H 0.13 4.85 7.60 -2.91 -0.02 4.83 16 34 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 35 H 0.11 5.83 6.16 -2.91 -0.02 5.81 16 36 H 0.29 13.23 8.30 -92.72 -0.77 12.46 16 37 H 0.11 5.22 7.60 -2.91 -0.02 5.20 16 38 H 0.08 1.52 6.47 -2.39 -0.02 1.50 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -64.18 371.74 -1.14 -65.32 By element: Atomic # 1 Polarization: 38.73 SS G_CDS: 0.17 Total: 38.90 kcal Atomic # 6 Polarization: -77.58 SS G_CDS: 3.37 Total: -74.21 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -0.69 Total: -73.82 kcal Atomic # 8 Polarization: -90.31 SS G_CDS: -5.70 Total: -96.01 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Atomic # 16 Polarization: 101.84 SS G_CDS: -0.32 Total: 101.52 kcal Total: -64.18 -1.14 -65.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619495363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.968 kcal (2) G-P(sol) polarization free energy of solvation -64.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds