Wall clock time and date at job start Tue Mar 31 2020 22:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47315 * 2 1 4 4 N 1.46496 * 109.47343 * 239.99144 * 2 1 3 5 5 S 1.65598 * 119.99676 * 95.00206 * 4 2 1 6 6 O 1.42105 * 106.40472 * 311.46248 * 5 4 2 7 7 O 1.42104 * 106.40285 * 178.54052 * 5 4 2 8 8 C 1.76201 * 107.22017 * 65.00117 * 5 4 2 9 9 C 1.38661 * 119.87781 * 270.02242 * 8 5 4 10 10 C 1.38611 * 120.50174 * 179.97438 * 9 8 5 11 11 C 1.37633 * 120.25254 * 0.02562 * 10 9 8 12 12 C 1.40705 * 119.74106 * 359.74702 * 11 10 9 13 13 C 1.41396 * 120.24420 * 180.27933 * 12 11 10 14 14 H 1.08004 * 119.99746 * 204.51790 * 13 12 11 15 15 C 1.39947 * 119.99824 * 24.51337 * 13 12 11 16 16 N 1.30815 * 120.00517 * 17.73763 * 15 13 12 17 17 Si 1.86808 * 119.99688 * 197.74032 * 15 13 12 18 18 H 1.48504 * 109.47141 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47144 * 120.00274 * 17 15 13 20 20 H 1.48505 * 109.46677 * 240.00279 * 17 15 13 21 21 C 1.37600 * 119.87974 * 89.99510 * 8 5 4 22 22 C 1.53005 * 109.46893 * 119.99406 * 2 1 3 23 23 H 1.08991 * 109.52248 * 59.87280 * 22 2 1 24 24 C 1.53179 * 109.52230 * 299.68600 * 22 2 1 25 25 C 1.53170 * 109.03594 * 183.11242 * 24 22 2 26 26 C 1.53095 * 109.16451 * 56.98524 * 25 24 22 27 27 O 1.42902 * 109.40819 * 302.38816 * 26 25 24 28 28 C 1.42904 * 114.10112 * 61.16200 * 27 26 25 29 29 H 1.09001 * 109.46933 * 60.00306 * 1 2 3 30 30 H 1.08991 * 109.47138 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47310 * 300.00801 * 1 2 3 32 32 H 0.96993 * 120.00439 * 275.00015 * 4 2 1 33 33 H 1.07999 * 119.74645 * 359.95384 * 9 8 5 34 34 H 1.08001 * 119.87439 * 180.02562 * 10 9 8 35 35 H 1.07995 * 120.13028 * 179.97438 * 11 10 9 36 36 H 0.96995 * 120.00754 * 179.97438 * 16 15 13 37 37 H 1.08004 * 120.11912 * 0.02562 * 21 8 5 38 38 H 1.09003 * 109.54687 * 302.98161 * 24 22 2 39 39 H 1.09006 * 109.54219 * 63.24493 * 24 22 2 40 40 H 1.09006 * 109.52667 * 297.07308 * 25 24 22 41 41 H 1.09005 * 109.57736 * 176.91891 * 25 24 22 42 42 H 1.09000 * 109.47817 * 182.40971 * 26 25 24 43 43 H 1.08995 * 109.48315 * 62.36927 * 26 25 24 44 44 H 1.08993 * 109.48322 * 178.85749 * 28 27 26 45 45 H 1.09005 * 109.49059 * 58.82553 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6908 -1.1960 5 16 2.4123 0.1769 -2.5504 6 8 1.3248 1.0591 -2.7922 7 8 2.8778 -0.7638 -3.5083 8 6 3.7929 1.1908 -2.1371 9 6 3.5871 2.4649 -1.6302 10 6 4.6637 3.2732 -1.3003 11 6 5.9510 2.8183 -1.4736 12 6 6.1719 1.5253 -1.9827 13 6 7.4900 1.0450 -2.1594 14 1 7.6891 0.2676 -2.8822 15 6 8.5365 1.5770 -1.3977 16 7 8.2754 2.2463 -0.3044 17 14 10.3065 1.3315 -1.9422 18 1 10.3324 0.5451 -3.2016 19 1 10.9422 2.6540 -2.1706 20 1 11.0520 0.5996 -0.8868 21 6 5.0713 0.7150 -2.3181 22 6 2.0400 -0.7212 1.2494 23 1 1.6753 -1.7482 1.2515 24 6 1.5365 0.0047 2.5008 25 6 2.1164 -0.6794 3.7424 26 6 3.6444 -0.6816 3.6475 27 8 4.0446 -1.3445 2.4464 28 6 3.5709 -0.7218 1.2506 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 2.1111 -1.6562 -1.1947 33 1 2.5802 2.8303 -1.4917 34 1 4.4917 4.2638 -0.9059 35 1 6.7884 3.4499 -1.2163 36 1 9.0008 2.6147 0.2237 37 1 5.2293 -0.2777 -2.7131 38 1 1.8595 1.0454 2.4735 39 1 0.4479 -0.0398 2.5349 40 1 1.7532 -1.7057 3.7961 41 1 1.8079 -0.1367 4.6361 42 1 4.0613 -1.2052 4.5079 43 1 4.0094 0.3453 3.6348 44 1 3.9348 -1.2742 0.3844 45 1 3.9349 0.3047 1.2063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619495621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:55 Heat of formation + Delta-G solvation = -122.803909 kcal Electronic energy + Delta-G solvation = -28706.783866 eV Core-core repulsion = 24815.009023 eV Total energy + Delta-G solvation = -3891.774843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.59753 -37.67003 -36.85104 -36.36223 -35.30462 -33.87032 -33.25734 -30.87123 -30.10446 -29.82491 -29.09360 -25.51753 -25.08527 -23.76102 -21.93747 -21.53867 -20.99939 -20.23674 -19.04585 -17.96750 -17.08517 -16.36877 -16.00316 -15.92750 -15.73783 -15.18148 -14.81301 -14.76596 -14.53005 -14.27835 -13.51590 -13.44642 -13.31971 -13.24498 -13.15594 -12.60791 -12.48906 -12.07739 -11.91394 -11.72641 -11.60473 -11.53908 -11.43691 -11.39005 -11.33992 -11.17106 -11.00553 -10.96272 -10.87670 -10.62743 -10.48739 -10.27589 -9.82077 -9.70936 -9.39277 -9.37370 -9.12059 -8.07051 -7.72967 -6.94983 -4.55374 1.01291 2.16549 2.60489 2.99992 3.02992 3.06651 3.52729 3.82158 3.97025 4.22955 4.41367 4.60890 4.73568 4.75922 4.86546 4.98072 5.07865 5.26338 5.35170 5.37956 5.42890 5.49563 5.54915 5.66369 5.79887 5.82831 5.84184 5.90757 5.92318 6.01753 6.09636 6.14145 6.24068 6.33112 6.38568 6.63169 6.73754 6.82185 7.01100 7.17384 7.22120 7.33302 7.35619 7.69934 7.79185 7.92024 8.38523 8.64985 8.69686 10.00349 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010246 B = 0.004754 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.176660 B = 5888.240641 C = 7566.521201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.160 3.840 3 H 0.090 0.910 4 N -1.117 6.117 5 S 2.686 3.314 6 O -0.974 6.974 7 O -0.973 6.973 8 C -0.631 4.631 9 C -0.153 4.153 10 C -0.119 4.119 11 C -0.119 4.119 12 C 0.093 3.907 13 C -0.458 4.458 14 H 0.083 0.917 15 C 0.076 3.924 16 N -0.792 5.792 17 Si 0.910 3.090 18 H -0.258 1.258 19 H -0.271 1.271 20 H -0.273 1.273 21 C -0.123 4.123 22 C -0.125 4.125 23 H 0.083 0.917 24 C -0.119 4.119 25 C -0.153 4.153 26 C 0.057 3.943 27 O -0.380 6.380 28 C 0.064 3.936 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.413 0.587 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.283 0.717 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.051 0.949 44 H 0.098 0.902 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.804 -3.302 8.030 13.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.052 3.948 3 H 0.108 0.892 4 N -0.874 5.874 5 S 2.782 3.218 6 O -0.964 6.964 7 O -0.964 6.964 8 C -0.723 4.723 9 C -0.174 4.174 10 C -0.139 4.139 11 C -0.139 4.139 12 C 0.090 3.910 13 C -0.487 4.487 14 H 0.101 0.899 15 C -0.142 4.142 16 N -0.417 5.417 17 Si 0.734 3.266 18 H -0.182 1.182 19 H -0.196 1.196 20 H -0.198 1.198 21 C -0.144 4.144 22 C -0.145 4.145 23 H 0.101 0.899 24 C -0.157 4.157 25 C -0.191 4.191 26 C -0.020 4.020 27 O -0.299 6.299 28 C -0.012 4.012 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.247 0.753 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.142 0.858 36 H 0.094 0.906 37 H 0.129 0.871 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.069 0.931 44 H 0.116 0.884 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.051 -3.226 7.403 12.894 hybrid contribution 1.314 0.124 0.418 1.385 sum -8.737 -3.102 7.821 12.130 Atomic orbital electron populations 1.22362 0.95057 1.02499 1.03097 1.20677 0.94177 0.96310 0.83618 0.89155 1.55716 1.82449 1.19116 1.30159 1.01762 0.74342 0.73391 0.72319 1.93513 1.52925 1.66301 1.83619 1.93540 1.82427 1.62582 1.57843 1.29732 1.14152 1.09834 1.18586 1.20061 0.97738 0.93819 1.05775 1.20790 0.93522 0.98232 1.01339 1.21629 0.95479 0.95791 1.00975 1.17676 0.92573 0.90916 0.89870 1.19664 0.91266 1.18877 1.18927 0.89862 1.25924 1.02033 0.93005 0.93270 1.69772 1.35238 1.26652 1.10060 0.86223 0.81083 0.79202 0.80105 1.18180 1.19597 1.19815 1.20771 0.90665 0.98869 1.04136 1.22087 0.97483 1.00700 0.94256 0.89853 1.21691 1.00795 0.99739 0.93454 1.22175 0.96973 1.01614 0.98335 1.22568 0.93668 0.97773 0.88028 1.87947 1.74731 1.53414 1.13790 1.22672 0.91769 0.99365 0.87428 0.90933 0.92275 0.91491 0.75285 0.87704 0.88494 0.85811 0.90626 0.87079 0.91277 0.90961 0.91252 0.91027 0.89307 0.93055 0.88358 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 9.17 37.16 0.34 -1.53 16 2 C 0.16 2.01 2.36 -67.93 -0.16 1.85 16 3 H 0.09 1.23 7.22 -51.93 -0.38 0.86 16 4 N -1.12 -15.54 4.76 -4.89 -0.02 -15.57 16 5 S 2.69 49.01 5.65 -107.50 -0.61 48.40 16 6 O -0.97 -19.17 16.53 -57.17 -0.94 -20.12 16 7 O -0.97 -20.21 17.27 -57.17 -0.99 -21.19 16 8 C -0.63 -13.27 5.81 -39.66 -0.23 -13.50 16 9 C -0.15 -3.17 8.90 -39.29 -0.35 -3.52 16 10 C -0.12 -2.59 10.02 -39.66 -0.40 -2.99 16 11 C -0.12 -2.88 8.70 -38.87 -0.34 -3.22 16 12 C 0.09 2.35 5.57 -106.82 -0.60 1.75 16 13 C -0.46 -11.59 9.05 -37.74 -0.34 -11.93 16 14 H 0.08 2.05 7.91 -52.48 -0.41 1.63 16 15 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 16 N -0.79 -19.26 10.95 55.55 0.61 -18.65 16 17 Si 0.91 17.94 29.60 -169.99 -5.03 12.91 16 18 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 21 C -0.12 -2.87 9.26 -38.88 -0.36 -3.23 16 22 C -0.12 -1.45 2.08 -90.48 -0.19 -1.64 16 23 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 24 C -0.12 -1.18 4.87 -26.55 -0.13 -1.31 16 25 C -0.15 -1.46 6.14 -26.59 -0.16 -1.62 16 26 C 0.06 0.67 6.84 37.21 0.25 0.92 16 27 O -0.38 -5.77 10.76 -35.23 -0.38 -6.15 16 28 C 0.06 0.95 5.93 37.20 0.22 1.17 16 29 H 0.07 0.91 7.64 -51.93 -0.40 0.51 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.61 6.52 -51.93 -0.34 0.27 16 32 H 0.41 4.84 8.84 -34.46 -0.30 4.54 16 33 H 0.10 1.96 7.60 -52.49 -0.40 1.56 16 34 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 36 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 37 H 0.11 2.51 7.60 -52.48 -0.40 2.11 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.61 6.63 -51.93 -0.34 0.26 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.10 1.51 7.69 -51.93 -0.40 1.11 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 371.98 15.07 5.61 5.61 Total: -1.00 -29.92 371.98 -10.92 -40.84 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -6.63 Total: 11.00 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: -2.53 Total: -37.09 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.59 Total: -34.22 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: -2.31 Total: -47.46 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Atomic # 16 Polarization: 49.01 SS G_CDS: -0.61 Total: 48.40 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.92 -10.92 -40.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619495621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.963 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds